BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492450
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24130.1 | Symbols: | Protein of unknown function, DUF538 |... 1033 0.0
> AT4G24130.1 | Symbols: | Protein of unknown function, DUF538
| chr4:12527753-12528593 FORWARD LENGTH=752
Length=752
Score = 1033 bits (559), Expect = 0.0
Identities = 685/741 (92%), Gaps = 28/741 (4%)
Strand=Plus/Plus
Query 1 ATTATCTTCCAAAATTTTCACCAC-AAACATTATATAAATTCCTCTTCATATTTGAAGAA 59
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1 ATTATCTTCCAAAATCCTCACCACAAAACATTATATAATTTCCTCTTCATATTTCAAGAA 60
Query 60 AACATTAATC---TTTTCT-TGTAGAATTCTATAATTCTCGTAACTAAATGGCGAGCGAG 115
||| |||||| |||| | |||||||||||||| |||| ||||||||||||||||||||
Sbjct 61 AACTTTAATCTTTTTTTGTGTGTAGAATTCTATATTTCTGGTAACTAAATGGCGAGCGAG 120
Query 116 GGAGTCGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGAGCGGAAGAA 175
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 121 GGAGTTGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGGGCGGAGGAA 180
Query 176 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 240
Query 236 TTGAAGAATCTTGTGGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAAGAATCTTGTTGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 300
Query 296 GACACTCCTTACGAGCATTTCTTCGAAGCAACCAACACTCGTGTCTCCTACGGTCTCGAG 355
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 GACACTCCTTACGAGCATTTCTTCGAAGCCACCAACACTCGTGTCTCCTACGGTCTCGAA 360
Query 356 GTCACCGCCTATGTCGAAAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCACCGCCTATGTCGACAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 420
Query 416 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 480
Query 476 TACTTCAAGACTCCTATGGGAATCGGCAAGTCTTTCCCCGTTACCGCATTCATGGACGAG 535
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 481 TACTTCAAGACTCCTATGGGAATCGGCAGGTCTTTCCCCGTTACCGGATTCATGGACGAG 540
Query 536 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAATTAAACCatttaataattattc 595
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 541 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAACTAAACCAACTAATAATTATTC 600
Query 596 ttatgataattataattacattttg-ggatgcttttataatttttattttaatatCTTGT 654
||||||| | || | |||||||| || ||||||| || |||| |||| |||||
Sbjct 601 TTATGAT--T-AT--T-ACATTTTGTGG-TGCTTTTTTA-TTTT-ATTT------CTTGT 645
Query 655 AAGGTTGCTCTCTGCCATTA--T-CAAT-AA-AA--CATTTTCTGGGAGCGTTGATTATT 707
||||||||||| ||| |||| | | || || || ||||||||||||| ||||||||||
Sbjct 646 AAGGTTGCTCTATGCTATTAAATTCTATCAATAATACATTTTCTGGGAGTGTTGATTATT 705
Query 708 TTCCCTAAAAACGTTATTCAT 728
|| |||| |||| ||||||||
Sbjct 706 TTTCCTACAAACTTTATTCAT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5