BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492454
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1441 0.0
> AT4G24090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 144 Blast hits
to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa
- 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes
- 15 (source: NCBI BLink). | chr4:12512736-12514592 FORWARD
LENGTH=1058
Length=1058
Score = 1441 bits (780), Expect = 0.0
Identities = 932/1002 (93%), Gaps = 24/1002 (2%)
Strand=Plus/Plus
Query 1 TCAACATGCAATGTTTATCTCTGCAATCGCTTCCATGGAAACCAAATTCAGTGGCTTTAC 60
|||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2 TCAAAATGCAATCTTTATCTCTGCAATCGCTTCCATGGAAACCAAATTCAGTGACTTTAC 61
Query 61 CTGAAATTTATCTTTTGAATCCCAAACAAATGACGGCTTCGAGTTCTCCGTATCGTAGAA 120
|||||||| |||||||||||||||| ||| |||| || |||||||||| |||||||||||
Sbjct 62 CTGAAATTAATCTTTTGAATCCCAAGCAATTGACTGCCTCGAGTTCTCAGTATCGTAGAA 121
Query 121 CTCGAAACTGGA-AACTTAGAAGTTCGTCGGAAGAGAATGTAGCCAA-TTCGAGTGACGG 178
|||||||||||| || ||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 122 CTCGAAACTGGAGAA-TTAGAAGTTCGTCGGAAGATAATGTAG-CAATTTCGAGTGACGG 179
Query 179 CGGAGATTTGAAGAAGTCGCTGTCAGGTATCGTGGGAAATCAAGTGGAGGAGCTATTTAG 238
||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 180 CGGAGATTTGAAGAATTCTCTGTCCGGTATTGTGGGAAATCAAGTGGAGGAGCTATTGAG 239
Query 239 CAGAGAAGAGAAC-AAGAATTTGCTTGATGGTCTGGAAAAAGCTTCGTTgagagtggaga 297
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGAGAAGAGAACAAAG-GTTTGCTTGATGGTCTGGAAAAAGCTTCGTTGAGAGTGGAGA 298
Query 298 tagcgaagagagagctcgaagagatagagagacaagaAATTGAGGCGAAATTGTTACAGG 357
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 299 TTGCGAAGAGAGAGCTCGAAGATATAGAGAGACAAGAAATTGAGGCGAAATTGCTACAGG 358
Query 358 ATTATGTTAATCAGCTCGAATCAAGAGCCGCAGAGATCGCAGAATGCCAGCAGGAGATTG 417
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATTATATTAATCAGCTCGAATCAAGAGCCGCAGAGATTGCAGAATGCCAGCAGGAGATTG 418
Query 418 TCGCAGCAAGATCAATGGTTGAGGAAGCAGAACGCGCTTTGTCCTTAGCAGAT-AC-CAA 475
|||||||||||||||||||||||||||||||||| | ||||| ||||||||| || |
Sbjct 419 ACGCAGCAAGATCAATGGTTGAGGAAGCAGAACGCTCCTTGTCATTAGCAGATAACTC-G 477
Query 476 AGCAATTGGAAGTTC--AGAAATGGGTTATTCGATCGACAAAGACAAGGAGAGGTTAGAA 533
| ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 478 A-CAATTGGAAGTTCGGAGAAA--GGTTATTCGATTGATAAAGACAAGGAGAGGTTAGAA 534
Query 534 TCTGCGAAAGCGGCAGTGATCGCAGCTGCGGTTGGTACCATTGCGGAACTCCCATTTGCT 593
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 TCTGCAAAAGCGGCAGTGATCGCAGCTGCGGTTGGGACCATTGCGGAACTCCCATTTGCT 594
Query 594 CTTTCTCAAGTCTCGAGCATTGAGCAGCTCCTTCTTCCCCTGGGAATAGCGTTTGCAAGC 653
|||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 595 CTTTCTCAAGTCGCAAGCATGGAGCAGCTTGTTCTGCCCCTGGGAATAGCGTTTGCAAGC 654
Query 654 TGTGCATTGTTTGGAGTCACATTCAGGTATGCAGTCAGAAGAGACTTGGATGATAGTCAT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 TGTGCATTGTTTGGAGTCACATTCAGGTATGCAGTCAGAAGAGACTTGGATGATAATCAT 714
Query 714 CTCAAATCCGGAGCAGTTGCAGCTTTTGGGTTTGTTAAAGGACTTGGTATGTTGAGCAGA 773
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTCAAATCCGGAGCCGTTGCAGCTTTTGGGTTTGTTAAAGGACTTGGTATGTTGAGCAGA 774
Query 774 GGACCGCCATTGGAGCTGAGCTGGGAAAGCTTGTTTTCACATGGCATAGACGGCGCCATT 833
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 775 GGACCGCCATTGGAGCTGAGCTGGGAAAGCTTGTTTTCACATGGGATAGACGGCGCCGTT 834
Query 834 TTGGTGTCTCAGAGCGTCTTGATATTTGCGTTTGCGTCCATAGGTTTGGACTTCTGTTTC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTGGTGTCTCAGAGCGTCTTGATATTTGCGTTTGCGTCCATAGGTTTGGACTTCTGTTTC 894
Query 894 AAGACGAAACTCCTAAGACCATTTCCTAGCTCCGACTAGTAGTATGTAGAAGAAGCAA-T 952
|||| ||| ||| ||||||||||||||||||| |||||| | | || | | || |||| |
Sbjct 895 AAGATGAAGCTCTTAAGACCATTTCCTAGCTCTGACTAG-A-T-TG-A-A-GA-GCAAAT 947
Query 953 TAAAAATGTAGAAATGAACAAATTATTACTTT-GAAGACTTT 993
|||||||||||||||||||||| | || |||| |||||||||
Sbjct 948 TAAAAATGTAGAAATGAACAAAATCTT-CTTTTGAAGACTTT 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5