BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492457
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24050.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 2307 0.0
> AT4G24050.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:12497055-12500128 FORWARD LENGTH=1698
Length=1698
Score = 2307 bits (1249), Expect = 0.0
Identities = 1525/1651 (92%), Gaps = 47/1651 (3%)
Strand=Plus/Plus
Query 1 GCCAGGCGGCGTTGCCTACAAAAACTTGACAAGAGAAACACAGTTTTTCTGATAATAATA 60
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 GCCAGGCGGCGTTGCCTACAAAAACCTGACAATCGAAACACAGTTTTTCTGATAATAATA 60
Query 61 CTTTA-ATTTACCATTATACCCTTCTAACCGAAAACGGCAATTACGttccttcttatttg 119
| | |||||||||||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct 61 -TAGACATTTACCATTATGCCCTTCTAACTGAAAACGGCAATTACGTTCCTTGTTATTTG 119
Query 120 ttttcttccttcttcttcttctgttt-tatttttgtggctttaatttttttcatatttat 178
|||||||||||| || ||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 120 TTTTCTTCCTTC-TC--CTTCTGTTTCT-TTTTTGTGGCTTTAATTTTTTTCATATTAAT 175
Query 179 tcGGAAAGAGAAAGACTCTTCACTCACATAACAGTCGCCGGTAACAGAACAAACTCCGAT 238
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 176 TCGGAAAGAGAAAGACTCTTCACTCCCATAACAGTCGCCGGTAACAGAA-TCACTCCGAT 234
Query 239 GATTGAGACTGGAAAATACCTTCTCGGCGCCGCCGGTGCTAGCGGCTTCGGCTCTAAATC 298
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 235 GATCGAGACTGGTAAATACCTTCTCGGCGCCGCCGGTGCTAGCGGTTTCGGCTCTAAATC 294
Query 299 TACCGCCGAAGAGGTTACCGAGAACTGCGACCTTCGTTCCGTCACAGTGATAATCACCGG 358
|||||||| || ||||||||||||||||||||||||||| |||||| | | ||||||||
Sbjct 295 CACCGCCGAGGAAGTTACCGAGAACTGCGACCTTCGTTCCATCACAGCGGTTATCACCGG 354
Query 359 TGCGACGTCGGGGATCGGAGCAGAGACGGCGAGAGTGCTGGCGAAACGAGGAGCGAGGTT 418
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 355 TGCGACGTCGGGGATCGGAGCGGAGACGGCGAGAGTTCTGGCGAAACGAGGAGCGAGGTT 414
Query 419 GATTTTCCCGGCGAGGAACGTGAAAGCGGCGGAGGAAGCGAAAGAGAGAATTGTCTCTGA 478
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || |||||
Sbjct 415 GATTTTTCCGGCGAGGAATGTGAAAGCAGCGGAGGAAGCAAAAGAGAGAATCGTTTCTGA 474
Query 479 GTTTCCGGAGACAGAGATCGTCGTTATGGAGCTTGATCTCAGTTCCATCGCCTCCGTACG 538
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 475 GTTTCCGGAGACAGAGATCGTCGTTATGAAGCTTGATCTTAGTTCTATCGCCTCCGTACG 534
Query 539 AAACTTCGTCGCCGATTTCGAGTCTCTTGATCTTCCTCTTAATCTTCTCATAAACAACGC 598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 AAACTTCGTCGCCGATTTCGAGTCTCTTGATCTTCCTCTTAACCTTCTCATAAACAACGC 594
Query 599 AGGCAAGTTAGCACATGAACATGCAATATCCGAAGACGGGATCGAGATGACATTTGCCAC 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 595 AGGCAAGTTAGCACATGAACATGCAATATCTGAAGACGGGATCGAGATGACATTTGCTAC 654
Query 659 TAATTACCTAGGCCATTTTCTCTTGACAAATCTTTTGCTAAAGAAGATGATTCAAACGGC 718
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 655 TAATTATCTAGGCCATTTTCTCTTGACCAATCTTTTGCTAAACAAGATGATTCAAACGGC 714
Query 719 AGAGGAAACAGGAGTTCAAGGACGTATCGTTAACGTTACGTCGGGTATTCACGGCTGGTT 778
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 715 AGAGGAAACAGGAGTTCAAGGACGTATCGTTAACGTTACGTCCGGTATTCACGGATGGTT 774
Query 779 TTCCGGTGACTTGATCGAATATCTCCGGCTGATTTCACAACCCAAGTGTCAATTCGATGC 838
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 775 CTCCGGCGACTTGATCGAATATCTCCGACTCATTTCACAACCCAAGTGTCAATTCGATGC 834
Query 839 GACACGTGCGTATGCTCTCTCGAAGCTTGCCAACGTTTTGCATACCAAGGAGCTCTCTTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACACGTGCGTATGCTCTCTCGAAGCTTGCCAACGTTTTGCATACCAAGGAGCTCTCTTC 894
Query 899 TAGACTCCAGAAAATTGAAGCCAACGTGACGGTAAATTGCGTACACCCAGGAGTTGTTAG 958
||||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||
Sbjct 895 TAGACTCCAGAAAATTGGAGCGAATGTTACGGTAAATTGCGTACACCCAGGAGTTGTTAG 954
Query 959 AACCCGGTTAACAAGAGACCGAGAAGGTTTATTGACAGATCTCGTCTTCTTCCTGGCTTC 1018
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 955 AACCCGGTTAACAAGAGACCGAGAAGGTCTATTGACAGATCTCGTCTTCTTCCTGGCTTC 1014
Query 1019 CAAGCTCGTTAAGACCGTCCCTCAAGCAGCAGCAACGACGTGTTACGTGGCAACAAATCC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAAGCTCGTTAAGACCGTCCCTCAAGCAGCAGCAACGACGTGTTACGTGGCAACAAATCC 1074
Query 1079 AAGACTGGTGAACGTATCGGGAAAGTATTTTACGGACTGTAATGAAACGACGCCGTCTGG 1138
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1075 AAGACTGGTGAACGTATCGGGAAAGTATTTTACGGATTGTAATGAAACGACACCGTCTGG 1134
Query 1139 ACTCGGATCCAACTC-ATCCGACGCTACCAAATTATGGGCTGCTTCTGAGATTCTGGT-A 1196
||||||| ||||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 1135 ACTCGGAACCAACTCCAGC-GAAGCTACCAAATTATGGGCTGCTTCTGAGATTCTGGTTA 1193
Query 1197 GCTCAACATTCCAAGGCCAGTTTCGACCCTTGTAGCTAAAGaaaaacaaaaaaaaGTAAT 1256
|||||||||||||| ||||||||||||| ||||||||| ||| || ||||| |||||
Sbjct 1194 -CTCAACATTCCAAGACCAGTTTCGACCCATGTAGCTAA-GAAGAAGAAAAA---GTAAT 1248
Query 1257 TATCTTATCTTCTTCACATACCCACCCTTAGGAAAAAAGTTAATACTAA-AT-T-TTAGT 1313
|||||||||||| | | ||||| || ||||||||||||||| ||||| || | |||||
Sbjct 1249 TATCTTATCTTCAT-A--TACCC-CC-TTAGGAAAAAAGTTA-TACTAGTATATCTTAGT 1302
Query 1314 AGATGAGA-AAATATATTATAAA-GTTTAGTTGATATATATACAATTAGTATCCTATTTC 1371
|||||||| ||| |||| | ||| |||||||||||||||| | ||| |||||||| ||||
Sbjct 1303 AGATGAGAGAAA-ATATCACAAAAGTTTAGTTGATATATACA-AAT-AGTATCCTGTTTC 1359
Query 1372 TATAGTGCGAATGCGAAGCGGATGTACTTTGTATTCTTTGTTTATACTTAA-GTTATATT 1430
|||||||||||||||||| |||||| || ||||||||||||| || ||||||||
Sbjct 1360 TATAGTGCGAATGCGAAGTTGATGTA----GT---CTTTGTTTATACT-AACGTTATATT 1411
Query 1431 ATACA-TATGAGAACAATTAATTATAAAA-AGTACATATGTTGAAGAGTTCAACTTGGAC 1488
| ||| |||||||||||||||||||| || | || || || |||||||||||||||||||
Sbjct 1412 AAACAATATGAGAACAATTAATTATATAAGA-TATATTTGCTGAAGAGTTCAACTTGGAC 1470
Query 1489 TATTATACTAAAATT--AGATTAATAAAGTGAAGTGGGAAATCAAAATGTCAATCATTAG 1546
|| ||||||||| || ||| ||||||||| |||| |||||||| |||||||||||||||
Sbjct 1471 TAATATACTAAAGTTTTAGAATAATAAAGTTAAGTAGGAAATCATAATGTCAATCATTAG 1530
Query 1547 TTTCGAAAGTGCTCGGAAGTTTGATAATTTTGTGATTATTAACTCATTTGGACTGATCTG 1606
||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1531 TTTCGAA-GTGCTCGGAAGTTTGATAATTATGTGATTA--AACTCATTTGGACTGATCTG 1587
Query 1607 TGAGAGATCTCTCCCTCTCTCTTATCGtttt 1637
|||||||||||||||||||||||||||||||
Sbjct 1588 TGAGAGATCTCTCCCTCTCTCTTATCGTTTT 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5