BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492459
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24026.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 324 3e-88
AT4G24030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 324 3e-88
> AT4G24026.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G10810.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:12486343-12486855 FORWARD LENGTH=513
Length=513
Score = 324 bits (175), Expect = 3e-88
Identities = 203/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 1 ATGAGGAGCGGCGGAGAGAGCCAGAGGACGGTGATGGGACtcgtcgtcgtcgtcgtcgtc 60
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 291 ATGAGGAGCGGCGGAGAGAGCGAGAGGACGGTGATGGGA-T--TCGTCGTCGTCGTCGTC 235
Query 61 TTCATCATCATGAGAGGTGGAGAGATTGACGCAGGCGCAACGTTCGAGGGAGGTGAAGAA 120
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 234 GTCGTCGTCATGAGAGGTGGAGAGATTGACGCAGGCGCAGCGTTCGAGGGAGGTGAAGAA 175
Query 121 AGCGGAGATGACGGTGGCGCTGATCCAGCTCGCGGCGTGGTCGATCTTCTCCATGGAAGT 180
|||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 174 AGCGGATATTACGGTTGCGCTGATCCAGCTAGCGGCGTGGTCGATCTTTTCCATGGAAGT 115
Query 181 CGTCGTGCTAACGTTGGAGGTGATGCTGATGCTTTT 216
||||||||||||||||||||||||||||||||||||
Sbjct 114 CGTCGTGCTAACGTTGGAGGTGATGCTGATGCTTTT 79
Score = 73.1 bits (39), Expect = 1e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 217 AAGACGACCAAGAAAAGAAGATCGTGGGATGGATCAATCTCTTAC 261
|||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 45 AAGACGACCAAGAAAAGAAGATCGTGGGATGGATCAATATATTAC 1
> AT4G24030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 4 Blast hits to 4
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:12486247-12486633 REVERSE LENGTH=387
Length=387
Score = 324 bits (175), Expect = 3e-88
Identities = 203/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAGCGGCGGAGAGAGCCAGAGGACGGTGATGGGACtcgtcgtcgtcgtcgtcgtc 60
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 1 ATGAGGAGCGGCGGAGAGAGCGAGAGGACGGTGATGGGA-T--TCGTCGTCGTCGTCGTC 57
Query 61 TTCATCATCATGAGAGGTGGAGAGATTGACGCAGGCGCAACGTTCGAGGGAGGTGAAGAA 120
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 58 GTCGTCGTCATGAGAGGTGGAGAGATTGACGCAGGCGCAGCGTTCGAGGGAGGTGAAGAA 117
Query 121 AGCGGAGATGACGGTGGCGCTGATCCAGCTCGCGGCGTGGTCGATCTTCTCCATGGAAGT 180
|||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 118 AGCGGATATTACGGTTGCGCTGATCCAGCTAGCGGCGTGGTCGATCTTTTCCATGGAAGT 177
Query 181 CGTCGTGCTAACGTTGGAGGTGATGCTGATGCTTTT 216
||||||||||||||||||||||||||||||||||||
Sbjct 178 CGTCGTGCTAACGTTGGAGGTGATGCTGATGCTTTT 213
Score = 84.2 bits (45), Expect = 6e-16
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 217 AAGACGACCAAGAAAAGAAGATCGTGGGATGGATCAATCTCTTACAAGAATAAC 270
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 247 AAGACGACCAAGAAAAGAAGATCGTGGGATGGATCAATATATTACAGGAATAAC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5