BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492460
Length=3184
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24020.1 | Symbols: NLP7 | NIN like protein 7 | chr4:1247975... 5121 0.0
AT4G38340.1 | Symbols: | Plant regulator RWP-RK family protein... 97.1 9e-19
> AT4G24020.1 | Symbols: NLP7 | NIN like protein 7 | chr4:12479752-12483993
FORWARD LENGTH=3203
Length=3203
Score = 5121 bits (2773), Expect = 0.0
Identities = 3065/3202 (96%), Gaps = 36/3202 (1%)
Strand=Plus/Plus
Query 1 ACACACACTGCCAAATTGACCTTTCTCTCTCGCTTCTCTTTCTCTATCCAATC-GAAACG 59
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 10 ACACACTCTGCCAATTTGACCTTTCTCTCTCGCTTCTCTTTCTCTATCCAATCGGAAA-G 68
Query 60 AGATCAA-C--C-A-A-A-GAG-AGAAGAACTTGCATACGCTAAATAAAACTTTCCCGGG 111
||||||| | | | | | ||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 69 AGATCAACCAACGATAGAGGAGAAGAAGAACTTGCATACGC-AAA-AAAACTTTCCCGGG 126
Query 112 AAAATTCCAGAAACTGCTTT-GACAAAATGTGCGAGCCCGATGATCATTCCGCTAGAAAC 170
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 127 AAAATTCCAGAAACTGCTTTGGA-AAAATGTGCGAGCCCGATGATAATTCCGCTAGAAAC 185
Query 171 GGTGTCACTACTCCACCGTCGAGGTCAAGAGAGCTTTTGATGGATGTTGACGACTTAGAT 230
|| |||||||||| ||| ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 186 GGCGTCACTACTCAACCTTCGAGGTCAAGGGAGCTTCTAATGGATGTTGACGACTTAGAT 245
Query 231 CTCGACGGTTCATGGCCACTAGATCAAATCCCTTACTTATCCTCATCGAATCGGATGATT 290
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 246 CTTGACGGTTCATGGCCACTAGATCAAATCCCTTACTTATCCTCATCGAATCGCATGATT 305
Query 291 TCTCCGAATTTTGTCTCGTCTTCCTCAGAGCAGCCTTGTTCACCTCTCTGGGCTTTCTCC 350
||||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 306 TCTCCGATTTTTGTCTCCTCTTCCTCTGAGCAGCCTTGCTCGCCTCTCTGGGCTTTCTCC 365
Query 351 GACGGTGGAGGCAACGGTTTTCACCACGCAACCTCCGGTGGTGACGATGAGAAAATCAGC 410
||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 366 GACGGTGGAGGAAATGGTTTTCACCACGCAACCTCCGGTGGCGATGATGAGAAGATCAGC 425
Query 411 TCCGCCTCTGGTGTTCCTTCTTTCCGTCTCGCCGAGTATCCAATCTTTCTCCCTTACTCT 470
|| | ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 426 TCTGTCTCCGGTGTTCCTTCTTTCCGTCTCGCCGAGTATCCTCTCTTCCTCCCTTACTCT 485
Query 471 TCTCCACCAGCAGCTGAGAACTCAACAGAGAAGAATAACAGTTTCCAGTTTCCTTCTCCA 530
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 486 TCTCCATCAGCAGCTGAGAACACAACAGAGAAGCATAACAGTTTCCAGTTTCCGTCTCCA 545
Query 531 TTGATGAGCCTAGTCCCACCAGAGAACACAGACAACTACTGTGTGATCAAAGAGAGGATG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TTGATGAGCCTAGTCCCACCAGAGAACACAGACAACTACTGTGTGATCAAAGAGAGGATG 605
Query 591 ACTCAGGCGCTTCGATACTTCAAAGAATCAACAGAACAAAACGTTTTGGCTCAGGTCTGG 650
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 606 ACTCAGGCGCTTCGATACTTCAAAGAATCAACCGAACAACACGTTTTGGCTCAGGTCTGG 665
Query 651 GCTCCTGTGAGAAAGAATGGTCGTAATTTGCTGACGACTTTGGGTCAACCTTTTGTTCTT 710
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 666 GCTCCTGTGAGAAAGAATGGTCGTGATTTGCTGACGACTTTGGGTCAACCTTTTGTTCTT 725
Query 711 AATCCTAATGGTAATGGGCTTAATCAATACAGGATGATCTCTCTCACATATATGTTTTCT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AATCCTAATGGTAATGGGCTTAATCAATACAGGATGATCTCTCTCACATATATGTTTTCT 785
Query 771 GTGGATAGTGAAAGTGACGTAGAGCTCGGACTCCCGGGTCGAGTTTTCCGTCAGAAATTG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GTGGATAGTGAAAGTGACGTAGAGCTCGGACTCCCGGGTCGAGTTTTCCGTCAGAAATTG 845
Query 831 CCTGAATGGACTCCAAATGTTCAGTACTATTCCAGCAAAGAATTCTCGCGGCTTGATCAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CCTGAATGGACTCCAAATGTTCAGTACTATTCCAGCAAAGAATTCTCGCGGCTTGATCAC 905
Query 891 GCCTTACACTACAACGTGCGTGGTACACTGGCCTTGCCTGTATTTAATCCCTCGGGTCAG 950
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 906 GCCTTGCACTACAACGTGCGTGGTACACTGGCCTTGCCTGTCTTTAATCCCTCTGGTCAG 965
Query 951 TCCTGCATTGGTGTTGTGGAACTTATAATGACCTCAGAGAAGATTCACTATGCACCCGAA 1010
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TCCTGCATAGGTGTTGTGGAACTTATAATGACCTCAGAGAAGATTCACTATGCACCCGAA 1025
Query 1011 GTGGACAAAGTTTGCAAAGCCCTTGAGGCGGTAAATCTGAAAAGCTCGGAAATACTTGAT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 GTGGACAAAGTTTGCAAAGCCCTTGAGGCGGTAAATCTGAAAAGCTCGGAAATACTTGAT 1085
Query 1071 CACCAAACAACACAGATATGCAATGAGAGTCGCCAAAACGCGCTTGCTGAGATTCTGGAA 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1086 CACCAAACAACACAGATATGCAATGAGAGTCGCCAAAACGCGCTTGCTGAGATTCTCGAA 1145
Query 1131 GTGCTGACAGTTGTATGTGAGACCCATAACTTGCCTCTCGCTCAGACTTGGGTTCCATGT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GTGCTGACAGTTGTATGTGAGACCCATAACTTGCCTCTCGCTCAGACTTGGGTTCCATGT 1205
Query 1191 CAGCACGGGAGCGTTCTTGCCAATGGTGGCGGTCTAAAGAAAAACTGCACCAGCTTTGAC 1250
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CAGCATGGGAGCGTTCTTGCCAATGGTGGCGGTCTAAAGAAAAACTGCACCAGCTTTGAC 1265
Query 1251 GGTAGCTGCATGGGCCAAATCTGCATGTCTACAACCGACATGGCCTGCTATGTTGTGGAT 1310
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1266 GGTAGCTGCATGGGTCAAATCTGCATGTCTACAACCGACATGGCCTGCTATGTCGTGGAT 1325
Query 1311 GCTCATGTCTGGGGCTTTAGAGATGCCTGTCTTGAACACCATCTCCAGAAAGGACAGGGA 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1326 GCTCATGTCTGGGGCTTTAGAGATGCCTGTCTTGAACACCATCTCCAGAAAGGCCAGGGA 1385
Query 1371 GTCGCTGGACGAGCTTTTCTCAATGGTGGCTCGTGTTTCTGCAGAGACATCACCAAGTTC 1430
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1386 GTCGCTGGACGAGCTTTTCTCAATGGTGGCTCATGTTTCTGCAGAGACATCACCAAGTTC 1445
Query 1431 TGCAAAACGCAGTACCCACTGGTCCATTATGCGCTCATGTTCAAGTTAACCACTTGTTTC 1490
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1446 TGCAAAACGCAGTACCCACTAGTCCATTATGCGCTCATGTTCAAGTTGACCACTTGTTTT 1505
Query 1491 GCAATCTCTCTCCAGAGCTCTTACACGGGTGACGACAGTTACATTCTTGAGTTCTTTCTT 1550
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1506 GCAATATCTCTCCAGAGCTCTTACACGGGCGACGACAGTTACATTCTTGAATTTTTTCTT 1565
Query 1551 CCGTCAAGTATAACAGACGACCAAGAGCAAGATTCGTTGTTGGGTTCTATTTTGGTGACA 1610
|| || |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1566 CCTTCGAGTATAACAGACGACCAAGAGCAAGATTTGCTGTTGGGTTCTATTTTGGTGACA 1625
Query 1611 ATGAAAGAACATTTTCAGAGTCTGAGGGTTGCATCTGGGGTTGACTTTGGTGAAGATGAC 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 ATGAAAGAACATTTTCAGAGTCTGAGGGTTGCATCTGGGGTTGACTTTGGTGAAGATGAC 1685
Query 1671 GACAAATTGTCTTTCGAGATCATCCAAGCATTACCAGACAAGAAGGTTCATTCAAAAATA 1730
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1686 GACAAATTGTCTTTCGAGATCATCCAAGCATTACCGGACAAGAAGGTTCATTCAAAAATA 1745
Query 1731 GAATCCATTCGAGTTCCCTTTTCTGGTTTTAAGTCAAACGCGGCAGAGACGCTGTTGATT 1790
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1746 GAATCCATTCGAGTTCCCTTTTCTGGTTTTAAGTCAAATGCAACAGAGACGATGTTGATT 1805
Query 1791 CCTCAGCCTGCGGTTCAGTCTTCTGAACCAGTAAACGAGAAAATCAATGTGGCCATTGTT 1850
|||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct 1806 CCTCAGCCTGTGGTTCAGTCTTCTGATCCAGTAAATGAGAAAATCAACGTGGCCACTGTT 1865
Query 1851 AACGGTGTGGTTAAGGAGAAGAAGAAAACAGAGAAAAAGCGTGGGAAGACTGAGAAAACA 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 AACGGTGTGGTTAAGGAGAAGAAGAAAACAGAGAAAAAGCGTGGGAAGACTGAGAAAACA 1925
Query 1911 ATCAGTCTGGATGTACTTCAGCAGTATTTCACTGGAAGTCTCAAAGACGCTGCAAAGAGC 1970
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 ATCAGTCTAGATGTACTTCAGCAGTATTTCACTGGAAGTCTCAAAGACGCTGCAAAGAGC 1985
Query 1971 CTTGGAGTTTGCCCGACGACAATGAAGCGAATTTGCAGACAACACGGAATCTCGCGGTGG 2030
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1986 CTAGGAGTTTGCCCGACGACAATGAAGCGAATTTGCAGGCAACACGGAATCTCGCGGTGG 2045
Query 2031 CCATCGAGGAAGATCAAGAAAGTGAATCGTTCAATCACAAAGCTGAAACGAGTCATCGAA 2090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 CCATCGAGGAAGATCAAGAAAGTGAATCGTTCAATCACAAAGCTGAAACGAGTCATCGAA 2105
Query 2091 TCTGTTCAAGGTACTGATGGAGGCCTCGACCTGACTTCCATGGCCGTTAGTTCCATCCCT 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 TCTGTTCAAGGTACTGATGGAGGCCTCGACCTGACTTCCATGGCCGTTAGTTCCATCCCT 2165
Query 2151 TGGACACACGGTCAAACATCAGCACAGCCACTAAACTCACCCAATGGTTCCAAACCACCC 2210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 TGGACACACGGTCAAACATCAGCACAGCCACTAAACTCACCCAATGGTTCCAAACCACCT 2225
Query 2211 GAGCTACCAAACACCAATAATTCACCTAACCACTGGTCAAGTGATCACAGTCCGAACGAG 2270
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2226 GAGCTACCAAACACCAATAATTCACCTAACCATTGGTCAAGTGATCACAGTCCGAACGAG 2285
Query 2271 CCAAATGGTTCGCCCGAGTTACCACCAAGCAACGGTCACAAGCGATCACGAACGGTAGAT 2330
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2286 CCAAATGGTTCGCCTGAGTTACCACCAAGCAATGGTCACAAGCGATCACGAACGGTGGAT 2345
Query 2331 GAGAGCGCTGGGACTCCAACCTCTCATGGCTCATGTGACGGTAACCAATTAGATGAACCG 2390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 GAGAGCGCTGGGACTCCAACCTCTCATGGCTCATGTGACGGTAACCAATTAGATGAACCG 2405
Query 2391 AAAGTCCCAAATCAAGATTCGCTATTCACGGTTGGTGGATCACCCGGGCTCCTTTTTCCA 2450
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2406 AAAGTCCCAAATCAAGATCCGCTCTTCACGGTTGGTGGATCACCCGGGCTCCTTTTTCCA 2465
Query 2451 CCTTATTCTAGAGATCATGATGTAACTGCAGCTTCATTCGCAATGCCGAACAGGCTTCTT 2510
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2466 CCTTATTCTAGAGATCATGATGTATCTGCAGCTTCCTTCGCAATGCCGAACAGGCTTCTT 2525
Query 2511 GGTTCTATAGACCATTTCCGAGGAATGCTCATTGAAGACGCTGGAAGTTCAAAAGATCTG 2570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2526 GGTTCTATAGACCATTTCCGAGGAATGCTCATTGAAGACGCTGGAAGTTCAAAAGATCTG 2585
Query 2571 AGAAATCTCTGCTCCACTTCAGCATTTGACGATAAGTTTCCAGACTCAAACTGGATGAAC 2630
|||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2586 AGAAATCTCTGCCCCACTGCAGCATTTGACGATAAGTTTCAAGACACAAACTGGATGAAC 2645
Query 2631 AATGATAATAACAGCAACAAC---TTATACGCTCCCCCAAAGGAAGAGGCCATTGCAAAT 2687
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2646 AATGATAATAATAGCAACAACAACTTATACGCTCCCCCAAAGGAAGAGGCCATTGCAAAT 2705
Query 2688 GTTGCACGCGAACCATCAGGCTTAGAAATGAGAACGGTAACAATCAAAGCAAGTTACAAA 2747
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2706 GTTGCATGCGAACCATCAGGCTCAGAAATGAGAACGGTAACAATCAAAGCAAGTTACAAA 2765
Query 2748 GAAGACATAATACGGTTCAGAATATCCTCGGGTTCGGGTATAATGGAGTTGAAGGATGAA 2807
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2766 GACGACATAATACGGTTCAGAATATCCTCGGGTTCAGGTATAATGGAATTGAAGGATGAA 2825
Query 2808 GTGGCGAAGAGGCTGAAACTTGATGCAGGAACGTTCGATATCAAGTATCTTGACGATGAT 2867
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2826 GTGGCTAAGAGGCTGAAAGTTGATGCAGGAACGTTCGATATCAAGTATCTTGACGATGAT 2885
Query 2868 AACGAATGGGTTTTGATAGCTTGTGATGCTGATCTTCAAGAATGTCTAGAGATCCCTAGA 2927
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2886 AACGAATGGGTTTTAATAGCTTGTGATGCTGATCTTCAAGAATGTCTCGAGATCCCTAGA 2945
Query 2928 TCCTCCCGCACGAAAATCGTAAGGCTCTTAGTTCATGATGTAACGACAAATCTCGGGAGC 2987
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2946 TCCTCCCGCACGAAAATCGTAAGGCTCTTAGTTCATGATGTAACGACAAATCTAGGGAGC 3005
Query 2988 TCTTGCGAGAGCACCGGAGAATTGTGACCTGAGGTAATTCATTCGAAGTTCGAACTATTT 3047
|| ||||||||||| ||||||||||||||||| ||||||||||||| | | | |||
Sbjct 3006 TCCTGCGAGAGCACTGGAGAATTGTGACCTGA--TAATTCATTCGAACT-C----T-TTT 3057
Query 3048 TGTAAATAAt-ttttttGAATTTTATTACTGTTTAGGGATTGTTTGGACAAA-----GTT 3101
||||||| | ||||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 3058 -GTAAATA-TGTTTTTTGAATTTTATTATTGTTTAGGGTTTCTTTGGACAAATTAAAGTT 3115
Query 3102 GTAAGAAAAAACATTTGTTTGTAACTTTTAACTGTAAGAGTGTAAGAGGGAGAGTGAGGT 3161
|||| || ||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 3116 GTAA-AAGAAACATTTGTTTGTAACTTTTAACTGTAAAAGTGTAAGAGAGAGAG--AGGT 3172
Query 3162 TAGAAGTAAATTTTAGTTGTAA 3183
||||||||||||||||||||||
Sbjct 3173 TAGAAGTAAATTTTAGTTGTAA 3194
> AT4G38340.1 | Symbols: | Plant regulator RWP-RK family protein
| chr4:17954710-17957828 FORWARD LENGTH=2304
Length=2304
Score = 97.1 bits (52), Expect = 9e-19
Identities = 94/114 (82%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 1942 CTGGAAGTCTCAAA-GACGCTGC-AAAGAGCCTTGGAGTTTGCCCGACGACAATGAAGCG 1999
|||| || || ||| ||||| || ||| | | |||| || || |||||||| ||||| |
Sbjct 1526 CTGGCAGCCT-AAAGGACGCCGCTAAA-AACATTGGTGTATGTCCGACGACCTTGAAGAG 1583
Query 2000 AATTTGCAGACAACACGGAATCTCGCGGTGGCCATCGAGGAAGATCAAGAAAGT 2053
|| ||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1584 GATATGCAGACAAAACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGT 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158377039051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5