BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492461
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24015.1 | Symbols: | RING/U-box superfamily protein | chr4... 1112 0.0
AT4G24010.1 | Symbols: ATCSLG1, CSLG1 | cellulose synthase like... 154 1e-36
> AT4G24015.1 | Symbols: | RING/U-box superfamily protein | chr4:12469742-12471261
REVERSE LENGTH=734
Length=734
Score = 1112 bits (602), Expect = 0.0
Identities = 653/677 (96%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 4 TTTTCAAGTTATGGTTGATCCTCAATCCCCAATCACACCACACCTATACCCTCAAGCAAT 63
|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 55 TTTTAAAGTTATGGTTGATCCTCAATCACCAATCACACCACACCTATACCCACAAGCAAT 114
Query 64 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCCATCTTATTCTCCATCAttct 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 115 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCTATCTTATTCTCCATCATTCT 174
Query 124 cttcctcttgttctatctcttttacctcaagagaagagactcttctctctcttctccttc 183
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 175 CTTCCTCTTGTTCTATCTCTTTTACCTCAAGAGAAGAGCCTCTTCTCTCTCCTCTCCTTC 234
Query 184 tccaatgattcttcctgtttcttcgagccaccagacttcttcGCATCTCCCCTCGGTTTG 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 235 TCCAATGATTCTTCCTGTTTCTTCGAGCCACCAGACTTCTTCGCATCTCCCCTCAGTTTG 294
Query 244 TTTGTTAGATGTGAAAGTAGAGCTTAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 TTTGTTAGATGTGAAAGTAGAGCTCAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 354
Query 304 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 414
Query 364 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 474
Query 424 TTATTCTCACAACACTTGTCCTCTTTGTCGCTCCTCTGTTTCCATCTCCTCCACCAAAAC 483
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 475 TTATTCTCACAACACTTGTCCTCTTTGTCGATCCTCTGTCTCCATCTCCTCCACCAAAAC 534
Query 484 CTCTGTGGGTGACGACAACGACCATCCAGATTCTCCTCAAACTTCACCGGTTTGACTCGA 543
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 535 CTCTGTTGATGACGACAACGACCATCCAGATTCTCCTCAAACGTCACCGGTTTGATTC-A 593
Query 544 AACCCC-GAATGAAATAAGCAAATAC-CA-GTTTTGTTAGTGAATAGATCGATACACA-A 599
|||||| ||| ||||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 594 AACCCCCGAAGGAAATAAGCAAATACACAAGTTTTGTTAGTGAATAGATCGATACA-AGA 652
Query 600 TGTAAATCTTAATTTTGCTGATTCAAGATATCAAAATGTAATCCATCACATTATAAATAT 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 653 TGTAAATCTTAATTTTGCTGATACAAGATATCAAAATGTAATCCATCACATTATATATAT 712
Query 660 TGGTTACACAAATTCAT 676
|||||||||| ||||||
Sbjct 713 TGGTTACACAGATTCAT 729
> AT4G24010.1 | Symbols: ATCSLG1, CSLG1 | cellulose synthase like
G1 | chr4:12466345-12469844 FORWARD LENGTH=2413
Length=2413
Score = 154 bits (83), Expect = 1e-36
Identities = 94/99 (95%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 579 AGTGAATAGATCGATACACA-ATGTAAATCTTAATTTTGCTGATTCAAGATATCAAAATG 637
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 2413 AGTGAATAGATCGATACA-AGATGTAAATCTTAATTTTGCTGATACAAGATATCAAAATG 2355
Query 638 TAATCCATCACATTATAAATATTGGTTACACAAATTCAT 676
||||||||||||||||| |||||||||||||| ||||||
Sbjct 2354 TAATCCATCACATTATATATATTGGTTACACAGATTCAT 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5