BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492469
Length=2920
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23940.1 | Symbols: | FtsH extracellular protease family | ... 4599 0.0
> AT4G23940.1 | Symbols: | FtsH extracellular protease family
| chr4:12437108-12441968 FORWARD LENGTH=2968
Length=2968
Score = 4599 bits (2490), Expect = 0.0
Identities = 2733/2850 (96%), Gaps = 17/2850 (1%)
Strand=Plus/Plus
Query 84 AACTCGATATAGAGCTCCAATTCTGCGTCGTTCGTTTACAGTGCTGTGCGAATTG-AAA- 141
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 114 AACTCGATGGAGAGCTCCAATTCTGCGTCGGTCGTTTACAGTTTTGTGCGAATTGAAAAC 173
Query 142 ----TC-TC--GTTCCAACGAGACGAACAA-ACCCCAAGCTGCTGATGATTTCGTAACTA 193
|| || | ||| |||||||||||| |||| |||||||| |||||||||||||
Sbjct 174 TGGGTCATCTAGCTCCGGCGAGACGAACAATTCCCC-TGCTGCTGACGATTTCGTAACTA 232
Query 194 GGGTTTTGAAGGAGAATCCTAGCCAATTGGAACCTCGTTATCGAGTTGGAGATAAGCTGT 253
|||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 233 GGGTTTTGAAGGAGAATCCTAGCCAAGTGGAACCTCGTTACCGAGTTGGTGATAAGCTGT 292
Query 254 ATAATCTCAAGGAGAGAGAGGATTTAAGCAAAGGCGCCAATGCTGCGACGGGTGCGTTTG 313
||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct 293 ATAATCTGAAGGAGAGAGAAGATTTAAGCAAAGGCACCAATGCGGCGACGGGTGCGTTTG 352
Query 314 AATTTATCAAAAGGAAGTTTGATTCGAAGACGAAAACGGAGACAGAGAAAAGCGAAGAGT 373
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 353 AATTTATCAAAAGGAAGTTTGATTCGAAGAAGAAAACAGAGACAGACAAAAGCGAAGAGT 412
Query 374 CTGTTTACTTGAGTGATATTTTGAGGGAATACAAGGGAAAGCTTTATGTTCCCGAGCAAG 433
||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 413 CTGTTTATTTGAGTGATATTTTGAGGGAGTACAAAGGAAAGCTTTATGTTCCGGAGCAAG 472
Query 434 TTTTTGGGCCAGAGTTATCTGAAGAAGAGGAGTTTGAGAAAACTGTGAAAGATTTACCAA 493
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 TTTTTGGGCCAGAGTTATCTGAAGAAGAGGAGTTTGAGAAAAATGTGAAAGATTTACCAA 532
Query 494 ATTTAAGCTTGGAAGATTTTAGAAAAGCTATGGAGAATGATAAAGTTAAGCTGCTGACTT 553
| | || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 533 AGATGAGTTTGGAAGATTTTAGAAAAGCTATGGAGAATGATAAAGTTAAGCTGCTTACAT 592
Query 554 CCAAGGAAGTTTCTGGTGTTCCTTACACTAGCGGCTATAGAGATTTTATTGTTGATCTTA 613
| |||||||||||||||||| |||| || || |||||||||| |||||||||||||||||
Sbjct 593 CGAAGGAAGTTTCTGGTGTTTCTTATACGAGTGGCTATAGAGGTTTTATTGTTGATCTTA 652
Query 614 AGGAGATTCCTGGAGTCAAGAGCTTACAGAGAACCAAATGGTCAATGAAGCTTGAACTTG 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 AGGAGATTCCTGGAGTCAAGAGCTTACAGAGAACCAAATGGTCAATGAAGCTTGAAGTTG 712
Query 674 GAGAAGCTCAAGCTCTTCTGAAAGAATACACCGGTCCGCAGTACGAAATAGAAAGGCACA 733
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 713 GAGAAGCTCAAGCTCTTCTGAAAGAATACACGGGTCCGCAGTACGAAATTGAAAGGCACA 772
Query 734 TGACGTCTTGGGTTGGAAAAGTGACGGACTTCCCGAACCCAGTCGCGTCTTCTATATCAA 793
||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| ||||
Sbjct 773 TGACGTCTTGGGTTGGAAAAGTGGCGGACTTCCCAAACCCTGTTGCGTCTTCTATTTCAA 832
Query 794 GTAGAGTGATGGTTGAGCTAGGAATGGTGACAGCAGTTATTGCTGCAGCGGCAGTTGTTG 853
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 833 GTAGAGTGATGGTTGAGCTGGGAATGGTGACAGCAGTTATTGCTGCAGCCGCAGTTGTTG 892
Query 854 TTGGAGGATTCTTAGCCTCAGCTGTTTTTGCAGTCACTAGTTTCGCCTTTGTCACTACAG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTGGAGGATTCTTAGCCTCAGCTGTTTTTGCAGTCACTAGTTTCGCCTTTGTCACTACAG 952
Query 914 TTTATGTTATTTGGCCTATAGCAAAGCCATTCCTCAAACTTTTTGTTGGCATCTT-CTTC 972
| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 953 TATATGTTGTTTGGCCTATAGCAAAGCCATTCCTCAAACTTTTTGTTGGCGTCTTCCTT- 1011
Query 973 GGTGTTCTTGAAAAATCATGGGATTACCTTGTTGATTTTCTCGGCGATGGGGGGATCTTC 1032
||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||
Sbjct 1012 GGTGTTCTTGAAAAATCATGGGATTACATTGTTGATGTTCTCGCCGATGGGGGCATCTTC 1071
Query 1033 TCAAGGATTTCTGATTTCTATACATTTGGTGGTGTATCATCAAGCCTGGAGATGCTCAAA 1092
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1072 TCAAGGATTTCTGATTTCTATACATTTGGTGGTGTAGCATCAAGTCTGGAGATGCTCAAA 1131
Query 1093 CCAATCCTACTTGTTGTCATGACTATGGTTCTTCTTGTTCGTTTCACACTGTCTCGGAGA 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1132 CCAATCCTACTTGTTGTCATGACTATGGTTCTTCTTGTTCGTTTCACACTGTCACGGAGA 1191
Query 1153 CCAAAGAACTTTAGGAAATGGGATTTATGGCAAGGGATTGCTTTTTCTCAGTCTAAAGCA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CCAAAGAACTTTAGGAAATGGGATTTATGGCAAGGGATTGCTTTTTCTCAGTCTAAAGCA 1251
Query 1213 GAAGCTCGTGTTGATGGTTCAACCGGTGTTAAATTCGCTGATGTTGCAGGGATTGATGAA 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GAAGCTCGTGTTGATGGTTCAACCGGTGTTAAATTCGCTGATGTTGCAGGGATTGATGAA 1311
Query 1273 GCAGTTGATGAACTTCAAGAGCTTGTAAAGTACTTGAAGAATCCCGACCTGTTTGATAAA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GCAGTTGATGAACTTCAAGAGCTTGTAAAGTACTTGAAGAATCCCGACCTGTTTGATAAA 1371
Query 1333 ATGGGAATTAAGCCTCCTCATGGAGTTCTTCTGGAGGGTCCCCCGGGTTGTGGCAAGACA 1392
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1372 ATGGGAATTAAACCTCCCCATGGAGTTCTTCTGGAGGGTCCCCCTGGTTGTGGCAAGACA 1431
Query 1393 CTCGTTGCAAAAGCCATTGCGGGGGAAGCTGGTGTGCCGTTCTACCAAATGGCAGGATCT 1452
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1432 CTCGTTGCAAAAGCCATTGCGGGGGAAGCTGGTGTACCGTTCTACCAAATGGCAGGATCT 1491
Query 1453 GAATTCGTTGAAGTTCTTGTTGGAGTTGGTTCAGCACGTATCAGAGATCTGTTTAAAAGA 1512
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1492 GAATTCGTCGAAGTTCTTGTTGGAGTTGGGTCAGCTCGTATCAGAGATCTGTTTAAAAGA 1551
Query 1513 GCTAAGGTAAACAAGCCATCCGTTATTTTCATCGATGAAATCGATGCCTTAGCAACTCGA 1572
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1552 GCTAAGGTAAACAAGCCATCCGTTATTTTCATCGATGAAATTGATGCCTTAGCAACTCGA 1611
Query 1573 CGTCAAGGGATTTTCAAGGAAAACTCAGACCAGCTGTACAATGCAGCCACTCAAGAAAGA 1632
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 1612 CGTCAAGGGATTTTCAAGGAAAACTCAGACCAGTTGTACAATGCGGCCACACAAGAAAGA 1671
Query 1633 GAAACCACATTGAACCAGCTACTCATCGAGCTTGATGGTTTTGACACCGGCAAAGGTGTG 1692
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1672 GAAACCACATTGAACCAGCTACTCATCGAGCTTGATGGTTTTGACACAGGCAAAGGTGTG 1731
Query 1693 ATTTTCTTGGGTGCCACCAATCGCAGAGATTTGTTAGACCCTGCTCTTCTACGTCCTGGT 1752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1732 ATTTTCTTGGGTGCCACCAATCGCAGAGATTTGTTAGACCCTGCTCTTCTACGTCCAGGT 1791
Query 1753 CGATTTGATCGAAAGATAAGAGTCCGTCCCCCTAATGCGAAAGGGAGATTGGATATTCTG 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CGATTTGATCGAAAGATAAGAGTCCGTCCCCCTAATGCGAAAGGGAGATTGGATATTCTG 1851
Query 1813 AAGATTCATGCCAGCAAAGTCAAGATGTCGGATTCTGTGGACTTATCATCTTATGCAAGC 1872
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1852 AAGATTCATGCCAGCAAAGTCAAGATGTCGGATTCTGTTGACTTATCATCTTATGCAAGT 1911
Query 1873 AACTTACCAGGATGGTCCGGAGCAAAACTGGCACAGTTGGTTCAAGAGGCTGCTCTTGTA 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AACTTACCAGGATGGTCCGGAGCAAAACTGGCACAGTTGGTTCAAGAGGCTGCTCTTGTA 1971
Query 1933 GCTGTCAGGAAAACGCATAGCTCGATTCTTCAATCAGACATGGACGACGCTGTGGACCGA 1992
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 GCTGTCAGGAAAACGCATAACTCGATTCTTCAATCAGACATGGACGACGCTGTGGACCGA 2031
Query 1993 CTCACTGTTGGTCCGACACGGATTGGTTTAGAATTGGGACATCAAGGTCAGTGTCGTAGA 2052
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CTCACTGTTGGTCCGACACGTATTGGTTTAGAATTGGGACATCAAGGTCAGTGTCGTAGA 2091
Query 2053 GCCACAACTGAAGTCGGGGTGGCAATCACTTCACATCTTTTATTGCGGTATGAGAATGCA 2112
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 GCCACAACTGAAGTCGGAGTGGCAATCACTTCACATCTTTTATTGCGGTATGAGAATGCA 2151
Query 2113 AAGATTGAGCGGTGCGATCGCGTTTCTATCATCCCTCGTGGTCAGACACTGTCTCAAGTT 2172
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2152 AAGATTGAGCGGTGCGATCGCGTTTCTATCATTCCTCGTGGTCAGACACTGTCTCAAGTT 2211
Query 2173 GTGTTTCATCGGCTTGATGATGAGTCCTACATGTTTGGTCGTCTTCCACAACTGCTTCAT 2232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 GTGTTTCATCGGCTTGATGATGAGTCCTACATGTTTGGTCGTCTTCCACAACTGCTTCAT 2271
Query 2233 CGTCTTCAGGTCTTTCTCGGAGGAAGAGCTGCAGAAGAAGTGATCTACGGTTCAGATACT 2292
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 CGTCTTCAGGTCTTGCTCGGAGGAAGAGCTGCAGAAGAAGTGATCTACGGTTCAGATACT 2331
Query 2293 TCAAAGGCATCAGTCGATTATCTCTCTGATGCCTCATGGCTAGCTCGTAAAATCTTAACC 2352
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2332 TCAAAGGCATCAGTCGATTATCTCTCTGACGCCTCATGGCTAGCTCGTAAAATCTTAACC 2391
Query 2353 ATATGGAACCTGGAGAACCCAATGGTGATACATGGCGAACCACCACCATGGAGAAAGAGG 2412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 ATATGGAACCTGGAGAACCCAATGGTGATACATGGCGAACCACCACCATGGAGAAAGAGA 2451
Query 2413 GCTCAGTTTGTTGGACCACGCCTAGACTTTGAAGGATCTCTCTATGACGACTATGACCTT 2472
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2452 CCTCAGTTCGTGGGACCACGCTTAGACTTTGAAGGATCTCTCTATGACGACTATGACCTC 2511
Query 2473 GTCGAGCCGCC-GATTAACTTCAACATGGATGATGAAGTCGCACAAAGAAGCGAAGAACT 2531
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2512 GTCGAGCCGCCAG-TTAACTTCAACATGGATGATGAAGTCGCACATAGAAGCGAAGAACT 2570
Query 2532 CATTAGCCAGATGTATAACAAAACAGTTTCTCTCCTCACGCAAAACCAAACTGCTCTCCT 2591
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2571 CATTAGCCAGATGTATAACAAAACAGTTTCTCTCCTCAGGCAAAACCAAACCGCTCTCCT 2630
Query 2592 CAAAACCGTTAAGGTTCTATTGAACCAGAAAGAGATAAGTGGAGAAGCAATAGATTTCAT 2651
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2631 CAAAACCGTTAAGGTTCTATTGAACCAGAAAGAGATAAGTGGAGAAGCAATAGACTTCAT 2690
Query 2652 ACTTGACCATTACCCACCTCAGACTCCGTTAAATTCTCTCTTGCAAGAGCAAAATCCGGG 2711
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2691 ACTTGACCATTACCCTCCTCAGACTCCGTTAAATTCTCTCTTACAAGAGCAAAATCCGGG 2750
Query 2712 AAGTCTTCCTTTTGTCCCTGAACACCTCCGGCGTGAATCCGGCGACTTTGTCCTTGTTAA 2771
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2751 AAGTCTTCCTTTTGTCCCTGAACATCTCCGGCGTGAATCCGGCGACTTTGTCCTTGTTAA 2810
Query 2772 TCACTCTACCGACGCCAATGCTCAAGCATGATTCCGGCGTCCCAGAGACATCAAATCACT 2831
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2811 TCACTCTACCGACGTCAATGCTCAAGTATGATTCCGGCGTCCCAGAGACATCAAATCACT 2870
Query 2832 AAGCTTAGGTTTATTCTTTGTCCGGCATTGTAACTTTAACTCAATCTCTGAAGTTTCGGA 2891
|||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2871 AAGCTTAGGTTTATTCATTGTCCGTCATTGTAACTTCGACTCAATCTCTGAAGTTTCGGA 2930
Query 2892 CTGTTTA-TTTGACAGAAATAAAGAAAAAA 2920
| ||| | ||| ||||||||||||||||||
Sbjct 2931 CAGTTAAATTT-ACAGAAATAAAGAAAAAA 2959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145132966099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5