BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492471
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23930.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 833 0.0
> AT4G23930.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:12436000-12436696
REVERSE LENGTH=697
Length=697
Score = 833 bits (451), Expect = 0.0
Identities = 543/586 (93%), Gaps = 11/586 (2%)
Strand=Plus/Plus
Query 1 ATGTCCAAGTCTTGTTCAAACCTCGCTTCATGCGCCGTCGCTACACTCTTCATAGTCTTC 60
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3 ATGTCGAAGTCTTGTTCAAACCTCGCTTCATGCGCCGTCGCCACGCTCTTCATAGTCTTC 62
Query 61 CTACTCATCGCCGCCCTTACCGTTTATCTCACAGTATTTAGACCAAGAGATCCCGAGATC 120
|| |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 63 TTAATCATCGCCGCACTTACTGTTTATCTCACAGTCTTTAGACCGAGAGATCCTGAGATC 122
Query 121 TTCGTCACCAACGTCAAGGTCCCGTCATTCTCCGTTGCCAATAGCTCCGTTAGCTTCA-C 179
| |||||| | ||||||||| || ||||||||||| || |||||||||||||| |||| |
Sbjct 123 TCCGTCACTAGCGTCAAGGTTCCTTCATTCTCCGTCGCTAATAGCTCCGTTAGTTTCACC 182
Query 180 TTTCTCTCAATTCTCCGCCGTTAGAAACCCTAACCGCGCTGCTTTCTCACACTACAACAA 239
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 183 TTT-TCTCAATTCTCCGCCGTTAGAAACCCTAACCGCGCAGCTTTCTCACACTACAACAA 241
Query 240 CATAATCCAGCTCTTTTACTATGGAAACCGGATCGGTTATACCTTCGTACCGGCTGGTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 TGTAATCCAGCTCTTTTACTATGGAAACCGGATCGGTTATACCTTCGTACCTGCTGGTGA 301
Query 300 GATCCAATCGGGTCGAACCAAGCGTATGTTAGCTACTTTCTCCGTTCAGTCGTTTCCTCT 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GATCGAATCGGGTCGAACCAAGCGTATGTTAGCTACTTTCTCCGTTCAGTCGTTTCCTCT 361
Query 360 CGCGGTCG-CCTCTAGTTCTCAAATCTCGGCCGCTGAGTTTCAGAATTTTGGATC---C- 414
||||| || ||||||||||||||||||| ||||| | ||||| |||| ||||| |
Sbjct 362 CGCGG-CGGCCTCTAGTTCTCAAATCTCCGCCGCCCAATTTCAAAATTC-GGATCGGTCC 419
Query 415 GGGTCAACAGTGGAAATAGAGTCGAAGCTGGAGATGGCGGGTCGGGTTCGGGTTTTCGGT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 GGGTCAACAGTGGAAATAGAGTCGAAGCTGGAGATGGCGGGTCGGGTTCGGGTTCTCGGT 479
Query 475 TTGTTTACTCACCGAATCGCGGCTAAATGTAATTGTAGGATCGCGATTTCCACGAGTGAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TTGTTTACTCACCGAATCGCGGCTAAATGTAATTGTAGGATCGCGATTTCCTCGAGTGAT 539
Query 535 GGTTCCATCGTAGCCGTCCGTTGTTAATATGAAAAA-CAAATTGTA 579
|||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 540 GGTTCCATCGTAGCCGTCCGTTGTTAATATTAAAAAACAA-TTGTA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5