BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492472
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23920.1 | Symbols: UGE2, ATUGE2 | UDP-D-glucose/UDP-D-galac... 1829 0.0
AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-e... 1046 0.0
AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 797 0.0
AT1G36770.1 | Symbols: | transposable element gene | chr1:1392... 165 1e-39
AT3G28530.1 | Symbols: | UDP-glucose 4-epimerases | chr3:10690... 134 3e-30
> AT4G23920.1 | Symbols: UGE2, ATUGE2 | UDP-D-glucose/UDP-D-galactose
4-epimerase 2 | chr4:12431277-12433864 FORWARD LENGTH=1390
Length=1390
Score = 1829 bits (990), Expect = 0.0
Identities = 1156/1232 (94%), Gaps = 27/1232 (2%)
Strand=Plus/Plus
Query 86 TCTCTATTAACGATGGCGAAGAACATTTTGGTTACCGGCGGCGCTGGTTACATCGGGAGT 145
||||| |||||||||||||||| |||||||||||||||||||||| || ||||| |||
Sbjct 128 TCTCTCTTAACGATGGCGAAGAGTGTTTTGGTTACCGGCGGCGCTGGCTATATCGGAAGT 187
Query 146 CATACTGTACTTCAACTGCTAGAAGGTGGTTACTCCGCCGTCGTTGTTGACAATTACGAC 205
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 188 CATACTGTTCTTCAACTGCTTGAAGGTGGTTACTCCGCCGTCGTTGTTGACAATTACGAC 247
Query 206 AATTCCTCCGCTGCTTCGCTTCAGCGCGTGAAGGAACTCGCCGGCGAAAACGGAAACCGC 265
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 248 AATTCCTCTGCTGCTTCGCTTCAGCGCGTGAAGAAACTCGCCGGCGAAAACGGAAACCGC 307
Query 266 CTCTCTTTTCACCAGGTGGATCTTCGAGACAGGCCTGCGCTTGAGAAGATTTTCTCAGAA 325
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 308 CTCTCCTTCCACCAGGTGGATCTCCGAGACAGGCCTGCGCTTGAGAAGATATTCTCAGAA 367
Query 326 ACTAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGCGAGAGTGTGGAG 385
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 368 ACAAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGTGAGAGTGTGGAG 427
Query 386 AAGCCTCTGCTCTATTATAATAATAATC-TTGTTGGTACTATTACTCTTTTGGAGGTTAT 444
|||||| ||||||||||||||||||| | ||||||| ||| |||||||||||||||||||
Sbjct 428 AAGCCTTTGCTCTATTATAATAATAA-CATTGTTGGCACTGTTACTCTTTTGGAGGTTAT 486
Query 445 GGCTCAATACGGCTGCAAAAATCTTGTGTTTTCATCATCAGCTACTGTCTATGGCTGGCC 504
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 GGCTCAATACGGCTGCAAAAATCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCC 546
Query 505 TAAAGAGGTTCCTTGCACTGAGGAGTCCCCAATTTCTGCCACAAACCCATATGGCCGTAC 564
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 547 TAAGGAGGTTCCTTGCACTGAGGAGTCACCAATTTCTGCCACTAACCCATATGGCCGTAC 606
Query 565 AAAGCTTTTTATCGAGGAGATTTGCCGGGATGTACATCGTTCTGACCCTGAATGGAAGAT 624
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 607 AAAGCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGAT 666
Query 625 CATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGA 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGA 726
Query 685 TCCTCTTGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TCCTCTTGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAG 786
Query 745 ACCTCACCTTACTGTCTTTGGAACCGACTACAAAACAAAGGACGGTACAGGGGTTAGAGA 804
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 787 ACCTCACCTTACTGTCTTTGGAACCGACTACAAGACAAAGGATGGTACAGGGGTTAGAGA 846
Query 805 TTACATTCATGTCATTGATTTAGCGGATGGACATATAGCCGCTCTGCGCAAGCTAGATGA 864
||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 847 TTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGA 906
Query 865 TCTCAAAATCAGTTGTGAGGTATACAATCTCGGAACGGGTAATGGAACGTCGGTCCTAGA 924
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 907 TCTCAAAATCAGTTGTGAGGTATACAATCTTGGAACGGGTAATGGAACATCGGTCCTAGA 966
Query 925 AATGGTTGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCGTTGGTGATGGCTGGAAG 984
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 967 AATGGTCGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCTTTGGTGATGGCTGGACG 1026
Query 985 ACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAACGCGAACTGAA 1044
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1027 ACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAGCGCGAACTAAA 1086
Query 1045 TTGGAAGGCTAAGTATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAA 1104
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TTGGAAGGCTAAGAATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAA 1146
Query 1105 TAACCCTTACGGCTACAATTCCTCCTCTAATGGCTCCTCTTCATAATTCTCCtttttta- 1163
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1147 TAACCCCTACGGCTACAATTCCTCCTCCAATGGCTCCTCTTCATAATTCTCCTTTTTTAA 1206
Query 1164 ttttt-----GC-TT--------ACTTAT-T-CATATAAACAAACACATGAAAAA---G- 1203
||||| || || |||||| | ||||||||||||||||| ||||| |
Sbjct 1207 TTTTTATTTTGCCTTTTTTGCTTACTTATATTCATATAAACAAACACATAAAAAAAAAGA 1266
Query 1204 -GAGA--GGCTGACAAGTACCCAAACTTTAGAAGAAAATTGGGGAAAATTCGTGTACAAT 1260
|||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 1267 AGAGAAAGGCTGACAAGTACCCAAACTTTAGAAGAAA-TTGAGGAAAATTCTTGTACTAT 1325
Query 1261 TAATTTATCATAGAAACTATATTTATTAAATC 1292
|||||||||||||||||||||||||||||||
Sbjct 1326 CAATTTATCATAGAAACTATATTTATTAAATC 1357
> AT4G10960.1 | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase
5 | chr4:6713557-6718550 REVERSE LENGTH=2827
Length=2827
Score = 1046 bits (566), Expect = 0.0
Identities = 892/1050 (85%), Gaps = 20/1050 (2%)
Strand=Plus/Plus
Query 93 TAACGATGGCGAAG-AACATTTTGGTTACCGGCGGCGCTGGTTACATCGGGAGTCATACT 151
||| |||||| || ||| || | || | ||| || ||||| |||||||| ||||| ||
Sbjct 77 TAATGATGGC-TAGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATCGGTAGTCACACG 135
Query 152 GTACTTCAACTGCTAGAAGGTGGTTACTCCGCCGTCGTTGTTGACAAT-TACGACAATTC 210
|| |||||||| || ||||||||||||| ||| |||||||| ||| | ||| |||||
Sbjct 136 GTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCT-CGATAATTC 194
Query 211 CTCCGCTGCT-TCGCTTCAGCGCGTGAAGGAACTCGCCGGC-GAAAACGGA-AACCGCCT 267
|||||| | | || ||||| || |||||| |||||| |||| ||| ||||| || |||||
Sbjct 195 CTCCGCCG-TCTCTCTTCAACGTGTGAAGAAACTCG-CGGCTGAACACGGAGAA-CGCCT 251
Query 268 CTCTTTTCACCAGGTGGATCTTCGAGACAGGCCTGCGCTTGAGAAGATTTTCTCAGAAAC 327
||| || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 252 CTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTCTCAGAAAC 311
Query 328 TAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGCGAGAGTGTGGAGAA 387
|||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 312 AAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAA 371
Query 388 GCCTCTGCTCTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAGGTTATGGC 447
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 372 GCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAAGTTATGGC 431
Query 448 TCAATACGGCTGCAAAAATCTTGTGTTTTCATCATCAGCTACTGTCTATGGCTGGCCTAA 507
|||| | |||||||||||||||||||||||||||||||| ||||| ||||||| || ||
Sbjct 432 TCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAA 491
Query 508 AGAGGTTCCTTGCACTGAGGAGTCCCCAATTTCTGCCACAAACCCATATGGCCGTACAAA 567
||| |||||||| || ||||||| ||||||||||| ||||||||||| || |||||
Sbjct 492 AGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAA 551
Query 568 GCTTTTTATCGAGGAGATTTGCCGGGATGTACATCG-TTCTGACCCTGAATGGAAGATCA 626
||| || || ||||| || ||||| |||||| | || ||||||||| ||||||||||| |
Sbjct 552 GCTATTCATTGAGGAAATCTGCCGCGATGTATA-CGGTTCTGACCCGGAATGGAAGATTA 610
Query 627 TATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATC 686
|||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 611 TATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGTGAAGACC 670
Query 687 CTCTTGG-AGTTCCCAACAATCTCATGCC-TTATGTCCAACAAGTTGCAGTTGGCCGGAG 744
||| ||| | |||| |||||||||||||| || ||| |||||||| || ||||| ||||
Sbjct 671 CTCGTGGTA-TTCCAAACAATCTCATGCCCTT-TGTACAACAAGTGGCTGTTGGTAGGAG 728
Query 745 ACCTCACCTTACTGTCTTTGGAACCGACTACAAAACAAAGGACGGTACAGGGGTTAGAGA 804
|||||| || ||||||||||||| || ||||| ||||| || || ||||||||| ||||
Sbjct 729 ACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGA 788
Query 805 TTACATTCATGTCATTGATTTAGCGGATGGACATATAGCCGCTCTGCGCAAGCTAGATGA 864
|||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||||| ||
Sbjct 789 TTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGA 848
Query 865 TCT-CAAAATCAGTTGTGAGGTATACAATCTCGGAACGGGTAATGGAACGTCGGTCCTAG 923
| | ||| ||| ||||||| || |||||||||||||| || |||||||| || || || |
Sbjct 849 T-TGCAAGATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTG 907
Query 924 AAATGGTTGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCGT-TGGTGATGGCTGGA 982
||||||||| ||| ||||||||||||||||||||||||||||| | ||||||| || |||
Sbjct 908 AAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGAAAATCCC-TCTGGTGATCGCGGGA 966
Query 983 AGACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAACGCGAACTG 1042
| || || ||||| ||||||||||| |||||||| ||||||| ||||||| | ||| ||
Sbjct 967 CGTCGACCGGGAGATGCTGAAGTTGTATACGCCTCGACGGAAAGAGCAGAAAGTGAATTG 1026
Query 1043 AATTGGAAGGCTAAGTATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGC 1102
||||||||||| || |||||||| |||||||||||||| ||| | ||||| ||||| ||
Sbjct 1027 AATTGGAAGGCCAAATATGGGATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCTAGT 1086
Query 1103 AATAACCCTTACGGCTACAATTCCTCCTCT 1132
||||| ||||| || || ||||||| |||
Sbjct 1087 AATAATCCTTATGGATATGATTCCTCTTCT 1116
> AT4G10955.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:6713557-6718555 REVERSE LENGTH=2749
Length=2749
Score = 797 bits (431), Expect = 0.0
Identities = 667/781 (85%), Gaps = 16/781 (2%)
Strand=Plus/Plus
Query 93 TAACGATGGCGAAG-AACATTTTGGTTACCGGCGGCGCTGGTTACATCGGGAGTCATACT 151
||| |||||| || ||| || | || | ||| || ||||| |||||||| ||||| ||
Sbjct 82 TAATGATGGC-TAGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATCGGTAGTCACACG 140
Query 152 GTACTTCAACTGCTAGAAGGTGGTTACTCCGCCGTCGTTGTTGACAAT-TACGACAATTC 210
|| |||||||| || ||||||||||||| ||| |||||||| ||| | ||| |||||
Sbjct 141 GTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCT-CGATAATTC 199
Query 211 CTCCGCTGCT-TCGCTTCAGCGCGTGAAGGAACTCGCCGGC-GAAAACGGA-AACCGCCT 267
|||||| | | || ||||| || |||||| |||||| |||| ||| ||||| || |||||
Sbjct 200 CTCCGCCG-TCTCTCTTCAACGTGTGAAGAAACTCG-CGGCTGAACACGGAGAA-CGCCT 256
Query 268 CTCTTTTCACCAGGTGGATCTTCGAGACAGGCCTGCGCTTGAGAAGATTTTCTCAGAAAC 327
||| || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 257 CTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTCTCAGAAAC 316
Query 328 TAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGCGAGAGTGTGGAGAA 387
|||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 317 AAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAA 376
Query 388 GCCTCTGCTCTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAGGTTATGGC 447
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 377 GCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAAGTTATGGC 436
Query 448 TCAATACGGCTGCAAAAATCTTGTGTTTTCATCATCAGCTACTGTCTATGGCTGGCCTAA 507
|||| | |||||||||||||||||||||||||||||||| ||||| ||||||| || ||
Sbjct 437 TCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAA 496
Query 508 AGAGGTTCCTTGCACTGAGGAGTCCCCAATTTCTGCCACAAACCCATATGGCCGTACAAA 567
||| |||||||| || ||||||| ||||||||||| ||||||||||| || |||||
Sbjct 497 AGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAA 556
Query 568 GCTTTTTATCGAGGAGATTTGCCGGGATGTACATCG-TTCTGACCCTGAATGGAAGATCA 626
||| || || ||||| || ||||| |||||| | || ||||||||| ||||||||||| |
Sbjct 557 GCTATTCATTGAGGAAATCTGCCGCGATGTATA-CGGTTCTGACCCGGAATGGAAGATTA 615
Query 627 TATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATC 686
|||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 616 TATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGTGAAGACC 675
Query 687 CTCTTGG-AGTTCCCAACAATCTCATGCC-TTATGTCCAACAAGTTGCAGTTGGCCGGAG 744
||| ||| | |||| |||||||||||||| || ||| |||||||| || ||||| ||||
Sbjct 676 CTCGTGGTA-TTCCAAACAATCTCATGCCCTT-TGTACAACAAGTGGCTGTTGGTAGGAG 733
Query 745 ACCTCACCTTACTGTCTTTGGAACCGACTACAAAACAAAGGACGGTACAGGGGTTAGAGA 804
|||||| || ||||||||||||| || ||||| ||||| || || ||||||||| ||||
Sbjct 734 ACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGA 793
Query 805 TTACATTCATGTCATTGATTTAGCGGATGGACATATAGCCGCTCTGCGCAAGCTAGATGA 864
|||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||||| ||
Sbjct 794 TTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGA 853
Query 865 T 865
|
Sbjct 854 T 854
> AT1G36770.1 | Symbols: | transposable element gene | chr1:13921668-13925773
FORWARD LENGTH=4106
Length=4106
Score = 165 bits (89), Expect = 1e-39
Identities = 98/102 (96%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 1050 AGG-CTAAGTATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAATAAC 1108
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4005 AGGACTAAGAATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAATAAC 4064
Query 1109 CCTTACGGCTACAATTCCTCCTCTAATGGCTCCTCTTCATAA 1150
||||||||||||||||||||||| | ||||||||||||||||
Sbjct 4065 CCTTACGGCTACAATTCCTCCTCCAGTGGCTCCTCTTCATAA 4106
> AT3G28530.1 | Symbols: | UDP-glucose 4-epimerases | chr3:10690637-10690714
FORWARD LENGTH=78
Length=78
Score = 134 bits (72), Expect = 3e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1073 ATGTGTAGGGATCTATGGAATTGGGCAAGCAATAACCCTTACGGCTACAATTCCTCCTCT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTAGGGATCTATGGAATTGGGCAAGCAATAACCCTTACGGCTACAATTCCTCCTCC 60
Query 1133 AATGGCTCCTCTTCATAA 1150
|| |||||||||||||||
Sbjct 61 AACGGCTCCTCTTCATAA 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5