BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492473
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1048 0.0
> AT4G23910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G10970.4);
Has 52 Blast hits to 52 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12426560-12429372
FORWARD LENGTH=852
Length=852
Score = 1048 bits (567), Expect = 0.0
Identities = 744/825 (90%), Gaps = 29/825 (4%)
Strand=Plus/Plus
Query 1 TTGGAATCCGCCGACTCCATTAT---A--TAAGAAAATCTGGTTTATGCTGTGACGAGTT 55
||||||||||||||||||||||| | | ||| || || ||| | || || ||||||
Sbjct 1 TTGGAATCCGCCGACTCCATTATAAAATCTCAGAGAA-CTAGTTCA-GC--TG-CGAGTT 55
Query 56 GACTCAG-TCATCGTCTTGTTCAGAAAGATTCTTTAGCTTGGACctctctcgctccgatc 114
||||| | |||||| ||| ||||||| ||| ||||||||| ||||||||| ||||||||
Sbjct 56 GACTC-GTTCATCGGCTTCTTCAGAACGATACTTTAGCTTCGACCTCTCT--CTCCGATC 112
Query 115 atcttcttcgt--ctctctctcgtcgctttctcttGCAAGGTTCTTACTTCATAA-TCGG 171
||||||||||| || || || ||| |||||||||||||||||||||||||||| ||
Sbjct 113 ATCTTCTTCGTCGCTTTCCCTAATCGTTTTCTCTTGCAAGGTTCTTACTTCATAATTC-- 170
Query 172 TATGGAGACTGCAACACCACTTATAGCGGAGACCATTGCCCTCACTGAAAAGAAAGTCGC 231
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 -ATGGAGACTGGAACACCACTTATAGCGGAGACCATTGCCCTCACTGAAAAGAAAGTCGC 229
Query 232 CATGGCTTTAGATGATATCATCAAGTTGGCAAAGAGAAAGTCCAATGTGAATAAGGGCAA 291
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 230 CATGGCTTTAGATGATATTATCAAGTTGGCAAAGAGAAAGACCAATGTGAATAAGGGCAA 289
Query 292 GAAACCAAGGAGAGGAAAGAACAAAACCCAAAACTTTAACGGTGCTGCCAGAAATAATAC 351
|||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 290 GAAACCAAGGAGAGAAAAGAACAAAAACCAAAACTTTAATGGTGCTGCGAGAAATAATAC 349
Query 352 CTCTAATGTGTGGCATC------A-T-A-TTTCTGCTGTTAGACAGGGTGCTGTTGGTAA 402
|||||||||| | |||| | | | |||||||||||||||||||||||||||||||
Sbjct 350 CTCTAATGTGCGCCATCATATGAACTCACTTTCTGCTGTTAGACAGGGTGCTGTTGGTAA 409
Query 403 GAGAAGGTCTAGGTTCCAAGGAAATCAATTTCCTGTAACAACAAACATTGCTCGTAAAGC 462
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 GAGAAGGTCTAGGTTCCAAGGAATTCAATTTCCTGTAACAACAAACATTGCTCGTAAAGC 469
Query 463 TGCTCCTGCTGCTCCACTCGATGCCCGCGGTAGAGCTTTTAATGGTGGAAGGACGACTAG 522
| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 470 TTCTACTGCTGCTCCACTCGATTTCCGCGGTAGAGCTTTTAATGGTGGAAGGATGACTAG 529
Query 523 TACTTATCAGTCAAGGCGTATTGCTCCACCAGTTCAAAATATATCTGTACAGGCTAGAGT 582
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGCCAATCAGTCAAGGCTTATTGCTCCACCAGTTCAAAATATATCTGTACAGGCTAGAGT 589
Query 583 CAACGCAAAGAGGCAAGAAGTAGATGAGAAAGTAGAACACAGCGGATGGAAGAGGAAGAC 642
||||||||||||||| || |||||| |||||||||||||||| ||| |||||||||||||
Sbjct 590 CAACGCAAAGAGGCATGAGGTAGATCAGAAAGTAGAACACAGAGGAGGGAAGAGGAAGAC 649
Query 643 ATTGGACTCTCGCTTTGCAAGTATGAAAGAGCAGAGAATGACGATTAACAACTATGGTGT 702
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACTGGACTCTCGCTTTGCAAGCATGAAAGAGCAGAGAATGACGATTAACAACTATGGTGT 709
Query 703 TACAGTACAAGTTCCAAGGTTGCCACCATGGGCTAGAGCCAGAAGATTTTTCCACTGAGA 762
|||||| ||||||||||| || |||||||||| ||||||||||||||||| ||| |||||
Sbjct 710 TACAGTGCAAGTTCCAAGATTACCACCATGGGTTAGAGCCAGAAGATTTTCCCAATGAGA 769
Query 763 AACCACAAAGCTTTTATGGATTTTTCCAATTTAGATTTTGGGTTT 807
|||||||||||||||| || || ||||| |||||| ||||| |||
Sbjct 770 AACCACAAAGCTTTTACGGGTTGTTCCAGTTTAGAATTTGGCTTT 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5