BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492474 Length=937 Score E Sequences producing significant alignments: (Bits) Value AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family ... 564 6e-160 AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 ... 104 2e-21 > AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family protein | chr4:12424451-12426528 FORWARD LENGTH=978 Length=978 Score = 564 bits (305), Expect = 6e-160 Identities = 470/543 (87%), Gaps = 37/543 (7%) Strand=Plus/Plus Query 288 AGATGGAACGCACTTTCATCGCTATCAAACCCGATGGGGTGCAGCGAGGACTGGTTTGTT 347 ||||||||||||||||||||||||||||||| ||||| ||||||||||||| || Sbjct 311 AGATGGAACGCACTTTCATCGCTATCAAACCTGATGGAGTGCAGCGAGGAC-----TG-- 363 Query 348 ACTTATATCAGAAATCATTTTACGGTTCGAACGCAAAGGATACAAGCTTGTTGGTATCAA 407 ||||||||||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 364 ----ATATCAGAAATCATTACACGGTTCGAACGCAAAGGATACAAGCTTGTTGGCATTAA 419 Query 408 AGTCATGGTTCCTTCAAAGGGTTTTGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 467 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 AGTCATGGTTCCTTCAAAGGGTTTCGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 479 Query 468 TTTCTTCAA---C--G-G---CTTCCTTATTTCAGTCCCTGTTGTTGCCATGGTATGGGA 518 ||||||||| | | | |||||||| |||| |||||||||||||||||||||||| Sbjct 480 TTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTGTTGTTGCCATGGTATGGGA 539 Query 519 AGGTGAGGGAGTGATTAGATACGGACGTAAACTGATTGGAGCTACAGATCCTCAGAAATC 578 |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 540 AGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAGCCACTGATCCTCAGAAATC 599 Query 579 ---TCTCTGTTGTTGT-TGGGAGTATGTTTTAGTCTGTT-TTCTCATAGATTATAGGAAC 633 | ||| | | | ||| | | | | ||||| || | | | | |||||| Sbjct 600 AGAAC-CTG--GAACTATCCGAG-GCGATCTCG-CTGTTGTTGT--T-G--GA-AGGAAC 648 Query 634 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATAAGCTTGTGGTTTAAG 693 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 649 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATCAGCTTGTGGTTTAAG 708 Query 694 CCTGAAGAACTCGTTTCTTTCACTGGCAATGCTGAGAAGTGGATCTACGGCCAGAACTGA 753 ||||||||||||||||||| |||| | || |||||||||||||||||||||||||||||| Sbjct 709 CCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGGCCAGAACTGA 768 Query 754 ACTAATCCATCTTTCTCCCTTATTTTCAGCCGTTAGATCAAACATAAATAATTACTGTTT 813 |||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | | Sbjct 769 ACTATTCCCTCTTTCTCCCTTATTTTCAACCGTTAGATCAGACATAAATAATTACT-TCT 827 Query 814 TTT 816 ||| Sbjct 828 TTT 830 Score = 204 bits (110), Expect = 1e-51 Identities = 123/129 (95%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 1 TTTGCACATCACTCTTCTCAGTCCTCACGCATCTTATAAGAGAAAATGAGCTCTCAAATC 60 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| Sbjct 10 TTTGCACATCACTCTTCTCAGTCCTCACGCATCGTATCAGAGAAAATGAGCTCCCAAATC 69 Query 61 TGCAGATCTGCTTCCAGAGCAGCGC-GGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 119 |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 70 TGCAGATCTGCTTCTAGAGCAGC-CAGGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 128 Query 120 CTTCTCCGA 128 ||||||||| Sbjct 129 CTTCTCCGA 137 > AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 | chr4:6732580-6734361 REVERSE LENGTH=980 Length=980 Score = 104 bits (56), Expect = 2e-21 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 43 AAAATGAGCTCTCAAATCTGCAGATCTGCTTCCAGAGCAGCGCGG-TCTCTTCTTTCTTC 101 |||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||| Sbjct 61 AAAATGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGC-CAAATCTCTTCTCTCTTC 119 Query 102 AGCCAAGAATGCTCGTTTCTTCTC 125 ||| || |||||||| |||||||| Sbjct 120 AGCTAAAAATGCTCGCTTCTTCTC 143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45813542064 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5