BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492474
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family ... 564 6e-160
AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 ... 104 2e-21
> AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family
protein | chr4:12424451-12426528 FORWARD LENGTH=978
Length=978
Score = 564 bits (305), Expect = 6e-160
Identities = 470/543 (87%), Gaps = 37/543 (7%)
Strand=Plus/Plus
Query 288 AGATGGAACGCACTTTCATCGCTATCAAACCCGATGGGGTGCAGCGAGGACTGGTTTGTT 347
||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 311 AGATGGAACGCACTTTCATCGCTATCAAACCTGATGGAGTGCAGCGAGGAC-----TG-- 363
Query 348 ACTTATATCAGAAATCATTTTACGGTTCGAACGCAAAGGATACAAGCTTGTTGGTATCAA 407
||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 364 ----ATATCAGAAATCATTACACGGTTCGAACGCAAAGGATACAAGCTTGTTGGCATTAA 419
Query 408 AGTCATGGTTCCTTCAAAGGGTTTTGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 467
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AGTCATGGTTCCTTCAAAGGGTTTCGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 479
Query 468 TTTCTTCAA---C--G-G---CTTCCTTATTTCAGTCCCTGTTGTTGCCATGGTATGGGA 518
||||||||| | | | |||||||| |||| ||||||||||||||||||||||||
Sbjct 480 TTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTGTTGTTGCCATGGTATGGGA 539
Query 519 AGGTGAGGGAGTGATTAGATACGGACGTAAACTGATTGGAGCTACAGATCCTCAGAAATC 578
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 540 AGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAGCCACTGATCCTCAGAAATC 599
Query 579 ---TCTCTGTTGTTGT-TGGGAGTATGTTTTAGTCTGTT-TTCTCATAGATTATAGGAAC 633
| ||| | | | ||| | | | | ||||| || | | | | ||||||
Sbjct 600 AGAAC-CTG--GAACTATCCGAG-GCGATCTCG-CTGTTGTTGT--T-G--GA-AGGAAC 648
Query 634 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATAAGCTTGTGGTTTAAG 693
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATCAGCTTGTGGTTTAAG 708
Query 694 CCTGAAGAACTCGTTTCTTTCACTGGCAATGCTGAGAAGTGGATCTACGGCCAGAACTGA 753
||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||
Sbjct 709 CCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGGCCAGAACTGA 768
Query 754 ACTAATCCATCTTTCTCCCTTATTTTCAGCCGTTAGATCAAACATAAATAATTACTGTTT 813
|||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 769 ACTATTCCCTCTTTCTCCCTTATTTTCAACCGTTAGATCAGACATAAATAATTACT-TCT 827
Query 814 TTT 816
|||
Sbjct 828 TTT 830
Score = 204 bits (110), Expect = 1e-51
Identities = 123/129 (95%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 1 TTTGCACATCACTCTTCTCAGTCCTCACGCATCTTATAAGAGAAAATGAGCTCTCAAATC 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 10 TTTGCACATCACTCTTCTCAGTCCTCACGCATCGTATCAGAGAAAATGAGCTCCCAAATC 69
Query 61 TGCAGATCTGCTTCCAGAGCAGCGC-GGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 119
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 70 TGCAGATCTGCTTCTAGAGCAGC-CAGGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 128
Query 120 CTTCTCCGA 128
|||||||||
Sbjct 129 CTTCTCCGA 137
> AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase
3 | chr4:6732580-6734361 REVERSE LENGTH=980
Length=980
Score = 104 bits (56), Expect = 2e-21
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 43 AAAATGAGCTCTCAAATCTGCAGATCTGCTTCCAGAGCAGCGCGG-TCTCTTCTTTCTTC 101
|||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 61 AAAATGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGC-CAAATCTCTTCTCTCTTC 119
Query 102 AGCCAAGAATGCTCGTTTCTTCTC 125
||| || |||||||| ||||||||
Sbjct 120 AGCTAAAAATGCTCGCTTCTTCTC 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5