BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492476
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23895.1 | Symbols: | Pleckstrin homology (PH) domain-conta... 1653 0.0
> AT4G23895.1 | Symbols: | Pleckstrin homology (PH) domain-containing
protein | chr4:12422105-12424363 FORWARD LENGTH=1144
Length=1144
Score = 1653 bits (895), Expect = 0.0
Identities = 1069/1150 (93%), Gaps = 24/1150 (2%)
Strand=Plus/Plus
Query 1 GAAGCAGTAAGCACCCAACCaaaaaaaCAATTGCGTCAAAACACTTTCCCGTAAATACAG 60
|||||||||||||| ||||||||||| ||||||||| |||||||||||| | |||||||
Sbjct 1 GAAGCAGTAAGCACTCAACCAAAAAACCAATTGCGT--AAACACTTTCCCTTGAATACAG 58
Query 61 AGATCACATTCGATCAGCGAGCTGATTTCT--C-------ATCAAAATTTCCGGTGAAGT 111
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 59 AGATCACATTCGATCAGCGAGCTGATTTCTCACAAGGGATATCAAAATTTCTGGTGAAGT 118
Query 112 GGGGTTGTAAAATTCGGCGTTGAAAGATATaaaaaaaGTGAAAGTTTCTGGAGTCGTTTC 171
||| ||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||
Sbjct 119 GGGATTGTAAAATTCGGCGTTGAAAGATATATAAAGAGTGGAAGGTTCTGGAGTCGTTTC 178
Query 172 AATTCATGGATGATAGTACTCCTAAGAAGCTAAACATATTACCTGATCACTTTAGTGCTC 231
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AATTCATGGATGATGGTACTCCTAAGAAGCTAAACATATTACCTGATCACTTTAGTGCTC 238
Query 232 CTAGTTCCACAGCAGAATCTTCTCAGGACGATACTCCATCATTTTCGCAGACAAAGGACG 291
||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 239 CTAGTCCCACAGCAGAATCTTCTCAGCACGATACTCCATCATCTTCGCAGCCAAAGGACG 298
Query 292 ATATTTCTCTGAGGTCTCGTAGCCAGTCACGGACTCGTAGAAACTTGAAAAGAGCAGCAA 351
||| |||||||||| || |||||||||||||||||| |||||| |||||||||||||||
Sbjct 299 ATAGTTCTCTGAGGCCTTATAGCCAGTCACGGACTCGCAGAAACCTGAAAAGAGCAGCAA 358
Query 352 CTATGTTGAATTTGTTCACTCTTCGCCGTCTTCCTTGGGTTTCAGATGGTCAAGAGAAGG 411
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 CTATGTTGAATTTGTTCACTCTTCGCCGTCTGCCTTGGGTTTCAGATGGTCAAGAGAAGG 418
Query 412 TAGAGCTGTCAGCAGCGGAGTTAGAATCACTTAGATCAGAGCTTTCTGATTTGGAAGAAA 471
| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 419 TCGAGCTATCAGCAGCGGAGTTAGAATCACTTAGATCAGAACTTTCTGATATGGAAGAAA 478
Query 472 GAGAAGCTTACCTCAAAGCTCAGTTGGAACATGTAGACGAAGTCTTGCGCTCTGCTCGTT 531
||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 479 GAGAAGCTTACCTCAAAGCCCAGTTGGAACATGTGGATGAAGTCTTGCGCTCTGCCCGTT 538
Query 532 TATCTGGTTATTTGTTTATCAGAAGTCGTTGGGCAGCTCTTCCGGGGGAACCACCACCAA 591
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 TATCTGGTTATTTGTTTATCAGAAGTCGTTGGGCAGCTCTTCCGGGTGAACCACCACCAA 598
Query 592 TAGACGATACAGAAGTAGACGACTGGCTTCCTCGGTTTGTCGTCCTTCAAGGCCCTTGTC 651
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TAGATGATACAGAAGTAGACGACTGGCTTCCTCGGTTTGTCGTCCTTCAAGGCCCTTGTC 658
Query 652 TTTTCTTCTATTTATTGTCAACAGACTTGAGCCCGCAAGATTCGACATTGCTGGCGGATA 711
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 659 TTTTCTTCTATTTATTGTCAACAGACTTGAGCCCTCAAGATTCGACATTGCTAGCAGATA 718
Query 712 TTGTAGAAGTTGGTTCGTTACCAAGCTACACGAGAGAATTCGATGAAACCCATTATTGCT 771
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTGTTGAAATTGGTTCGGTACCAAGCTACACGAGAGAATTCGATGAAACCCATTATTGCT 778
Query 772 TTTACATCTTAACCCGTCAAGGTCTAAGATTTGAGTGCTCAAGCACCTCTAAAACACAGG 831
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTACATATTAACCCGTCAAGGTCTAAGATTTGAGTGCTCAAGCACCTCTAAAACACAGG 838
Query 832 TTGATTCGTGGTTGTCGGTATTGCGCCTTGATTGCAAGTCTGAACCAGAAGAAAGGTTAC 891
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGATTCGTGGTTGTCGGTTTTGCGCCTTGATTGCAAGTCTGAACCAGAAGAAAGGTTAT 898
Query 892 CAAACGGATCAAG-CGAAGCGCCACAATAAATTGAAGATTGGTCATTGCTCTGTATAGTT 950
|||| |||||| | |||||| ||| ||||||||||||| ||||| ||||||| ||||||
Sbjct 899 CAAATGGATCA-GTCGAAGCTCCAGAATAAATTGAAGAGCGGTCACTGCTCTGGATAGTT 957
Query 951 TTCATTTTCTGTGTATATAATATGCTTCTTTT-AGATGTAGCAGAATTCACGTCAATGAA 1009
||||||| | |||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 958 TTCATTTA-TATGTATATAAT--GCTTCTTTTTAGATGTAGTAGAATTCACGTCAATGAA 1014
Query 1010 AGGTTCTTTTACTGAACTGGTGATTACAAtttttttGATTTACTTCTTTTAGCTGCTAAA 1069
|||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1015 AGGTTCTTTTACTGAACTGGTGGTTACAATATTTTTGGTTTACTTCTTTTAGCTGCTAAA 1074
Query 1070 GACATTGGAATATATTCGTTACTTGAATAGGCAATA-TT---G--GAAAAAGAAA-GTGA 1122
|||||||||||||||||||| ||||||||||||||| || | | |||| ||| ||||
Sbjct 1075 GACATTGGAATATATTCGTTTCTTGAATAGGCAATAATTCTAGTTGGAAAACAAAAGTGA 1134
Query 1123 TTAGAAAGGC 1132
||||||||||
Sbjct 1135 TTAGAAAGGC 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5