BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492478
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23882.1 | Symbols: | Heavy metal transport/detoxification ... 1304 0.0
> AT4G23882.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr4:12417553-12418893 FORWARD LENGTH=1081
Length=1081
Score = 1304 bits (706), Expect = 0.0
Identities = 923/1024 (90%), Gaps = 30/1024 (3%)
Strand=Plus/Plus
Query 1 GATTTCGTTCGTGGATATTCAACAAATGACGTTACATTTGATTATGAAGATACCAAGTAC 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3 GATTTCGTACGTGGATATTCAACAAATGACGTTACACTTGATTATGAAGATACCAAGTAC 62
Query 61 AATATCaaaaaaaTATGGAAACCATGCTA-ATATACA--CCAATTCCAGCAATATATCAA 117
|||||||| | || ||||||| || || | || || | || ||||||||||||||||
Sbjct 63 AATATCAAGAGAACATGGAAA-GTTG-TATAAATTCAGGCGAA-TCCAGCAATATATCAA 119
Query 118 AACGTCTATGGACTCATTTTGGAAAGTAAATAATCAT-ATACCCATTGTCTTCTTTTACA 176
|||||||||||||||||||| |||||||| | ||| | ||| || ||| |||| ||||
Sbjct 120 AACGTCTATGGACTCATTTTTGAAAGTAACTTATC-TCATATTTATAGTCGTCTTCTACA 178
Query 177 TTAGAGTTTCAAGTTGAGGTGCTTTTATGCAATGTCAAACCTATCTCCACCAGTTCGAAC 236
|||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 179 TTAGAGTTTCAAGTAAAGGTGC--TTATGCAATGGCAAACCTATCTCCACCCGTTCGAAC 236
Query 237 TTGCGTTCTGAGAGTTGGAATCAAGTGTTGCAAAGGTTGCCAGACCAAAGCAAAGAGAAA 296
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 237 TTGCGTTCTGAGAGTTGGAATCAAGTGTTGCAAAGGCTGCCAGACAAAAGCAAAGAGAAA 296
Query 297 GTTGCTAAATGTCTCTGGGGTGGA-TGCAGTTGAGTATAACGCAGAACAAGGGCTCTTAA 355
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
Sbjct 297 GTTGCTAAATGTCTCTGGGGT-GAGTACAGTTGAGTATAACGCAGAACAAGGGCTCTTGA 355
Query 356 CAGTCTCAGGTGATGTTAACCCAACAACATTGCTTCATAAGCTTACCAAATGGGGTAAAA 415
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 356 CAGTCACAGGTGATGCCAACCCAACAACATTGCTTCATAAGCTTACGAAATGGGGCAAAA 415
Query 416 AGGCAGAACTTGTCTCTTTTCTTGGAGAC-A--ACTCTTCCTTTGTTCCTAGAACCCCAG 472
|||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 416 AGGCAGAACTAGTCTCTTTTCTTGGAGACAACTACTCTTCCCATGTTCCTAGAACCCCGG 475
Query 473 AACAAAACCAAAACAAGACAATGGAGAAGAAGGAGGAGAAGCCAACAAAATGTTGTCTTC 532
||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 476 AACAAAACCAAAACAAGACAATGGAGAAGAAAAAGAAGAAGCCAACAAAGTGTTGTCTTC 535
Query 533 TAATGTGTTTTGG-GA-AA-AGAAGCAAGAACACAAAGGTTGAGCCTATGGCGATGCCAA 589
||||||||||||| | || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 536 TAATGTGTTTTGGAAATAAGAGAAGCAAGAACACAAAGATTGAGCCTATGGCGATACCAA 595
Query 590 ACTGG-AACTATCGAGGAATAGGGACA-GAAAACGGGAATGCCACGCCCTTCATTAACGC 647
||||| || ||||||||| || ||| | ||||| || ||||||| ||| |||||||||||
Sbjct 596 ACTGGCAA-TATCGAGGAGTA-GGAAATGAAAATGGCAATGCCAGGCCTTTCATTAACGC 653
Query 648 TGCAATGTCACCTCCAATGGTGTACCCTCCTCCACAAGCAGTGCCTGGCTTTAAAACACC 707
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 654 GGCAATGTCACCTCCAATGGTGTATCCTCCTCCACAAGCAGTGCCTGGCTTCACAACACC 713
Query 708 CATACCATACCCTCCTCCTAATTATTTT-GGGGCAAGACAACCACCACCATACACTGGTG 766
|||||||||||||||||||| || |||| || ||||| ||||||||||||||||||||
Sbjct 714 CATACCATACCCTCCTCCTAGTTTTTTTCCAGG-AAGACCACCACCACCATACACTGGTG 772
Query 767 CTGGTATGTTCCAGTCAGCTCCACCACAATCCCCACCATATTTTCCAGTTCCCAATTCTA 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 CTGGTATGTTCCAGTCAGCTCCACCACAATCCCCACCATATTTTCCAGTTCCCAACCCTA 832
Query 827 GGCTGCATTACCCGCACCACTGACAAAGTTCTTTCAGACGATACATTTATTGCTTGTT-C 885
||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| |
Sbjct 833 GGCTGCATTACCCGCACCACTGATACAGTTCTTTCAGACGATACATTCATTGCCTGTTTC 892
Query 886 TTCTCTTTAGCTATGACTCAA-TGCTGAGTAATAAGATGATG--AA-TTCTTTTCAACAT 941
||||||| ||||||||||||| ||||||||||||| | |||| || |||||||||||||
Sbjct 893 TTCTCTT-AGCTATGACTCAAATGCTGAGTAATAATAAGATGGTAAATTCTTTTCAACAT 951
Query 942 GTAAGGGATATGAAGAAATGCAAATGAATGATTTCCAAAAGAAAGCAGACTAGAAAACAT 1001
|||||| |||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 952 GTAAGGTATATGAAGAAATGCAAATGAATGATTTCCACAATAAGGCAGACTAGAAAACAC 1011
Query 1002 ATAT 1005
||||
Sbjct 1012 ATAT 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5