BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492479
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23880.1 | Symbols: | unknown protein; Has 73 Blast hits to... 1088 0.0
> AT4G23880.1 | Symbols: | unknown protein; Has 73 Blast hits
to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa
- 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes
- 40 (source: NCBI BLink). | chr4:12415677-12416450 REVERSE
LENGTH=774
Length=774
Score = 1088 bits (589), Expect = 0.0
Identities = 717/777 (92%), Gaps = 16/777 (2%)
Strand=Plus/Plus
Query 1 CTTTCAAGATAACACAAAACCTCTCTCTCCCTAATTTGTT--A-AAGAAG-AAGAAGAAG 56
|||||||||||||||||||||| ||||||||| ||||||| | |||||| || || |||
Sbjct 1 CTTTCAAGATAACACAAAACCTTTCTCTCCCT-ATTTGTTGAAGAAGAAGAAAAAAAAAG 59
Query 57 ATGATGATGGATTCTCTAGCTAAATGCTTCAACAGGCTTCAAGAAAGGTACGACAACGTT 116
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAATGATGGATTCTCTAGCTAAATGCTTCAACAGGCTTCAAGAAAGGTACGACAACGTT 119
Query 117 CTAGAAGCAAAACCTATCTACAGAGACGACTTAGACATAACGTTGCCTCTGAACGAATCA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTAGAAGCAAAACCTATCTACAGAGACGACTTAGACATAACGTTGCCTCTGAACGAATCA 179
Query 177 --G-AGGTTTCAGTAGAATCGACCAAAAGGTCTCGGTGCTTGCAGAGAGCCAAGAGGATT 233
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 AAGGAGGTTTCAGTAGAATCGACCAAAAAGTCTCGGTGCTTGCAGAGAGCCAAGAGGATT 239
Query 234 GACAAATCGCTGAGGTTCGAAGC-GG--AAGAGGAAGACGATGAACAGAAGCAAAAGCCT 290
||||||||||||||||| |||| || |||||||||| ||||||||||| ||||||||
Sbjct 240 GACAAATCGCTGAGGTTTGAAGAAGGCGAAGAGGAAGAAGATGAACAGAATAAAAAGCCT 299
Query 291 CTAGCTAAGCCACGTAAGGTTGTGAGGTTTCAGTTAGAGAATAATAAGATCTTCGAGCCA 350
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTGGCTAAGCCACGTAAGGTTGTGAGGTTTCAGTTAGAGAATAATAAGATCTTCGAGCCA 359
Query 351 AAGAAGACGGTGAGTTTTAATGATGATCACGAACTCGAACTAAAGGAGAAGCCTCTGGAA 410
|||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 360 AAGAAGACGGTGAGTTTTGATGATGATCACGAACTCAAACCAAAGGAGAATCCTCTGGAA 419
Query 411 GAGAAAGAGGGTTTGAATATAGTTGAAAAGAAGGAAGAGGTTGTCAGGGTTAAGATCAAG 470
|| |||||| ||||||| || |||||| |||||||||||| || |||||||||||||||
Sbjct 420 GAAAAAGAGAGTTTGAAAATGGTTGAAGGGAAGGAAGAGGTCGTGAGGGTTAAGATCAAG 479
Query 471 ATGACAAAGCAAGAAGCTCAAAGGCTGTTATCGAAATGCAAAAACGACAGCGTTTTTGAT 530
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||| |
Sbjct 480 ATGACAAAGCATGAAGCTCAACGGTTGTTGTCGAAATGCAAAAACGACAGCGTTTTAAAG 539
Query 531 TTGGAGCATTTTGTGGACCAGATCGCACACGTCCCTGTTCATCAGCTTCAAGTCGCTATG 590
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGAGCATCTTATGGACCAGATCGCACACGTCCCTGTTCATCAGCTTCAAGTCGCTATG 599
Query 591 GTGATGGTTGGTTGTAATAATGAGCGACAAGGAAATGGCTGCTGGTTCTCCCAGCTGGAA 650
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 GTGATGGTTGGTTGTAATAATGAGCGACAAGGAAATGGCTGCTGGTTATCCCAGCTGGAA 659
Query 651 TAAGTTAATTTTGAGTTTATCTATCGAACTTTTTTGTAGTTTTAGGGTAGTATCtatata 710
||||||||| |||||||| |||||| || |||| |||||||||| |||| | |||||||
Sbjct 660 TAAGTTAATCTTGAGTTTTTCTATCAAA-TTTT--GTAGTTTTAGAGTAGAAACTATATA 716
Query 711 aatatatatgtgtgtgtatatatTTTGTAACAGATTAATAGAAGTAACATGAATTTG 767
||| | || || ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 AAT-T-TACGTTTGTATATATATTTTGTAACAGATTAATAGAAGTAACATGATTTTG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5