BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492480

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23870.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   736    0.0  


> AT4G23870.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G11020.1); 
Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12414230-12415049 
FORWARD LENGTH=820
Length=820

 Score =  736 bits (398),  Expect = 0.0
 Identities = 470/504 (93%), Gaps = 7/504 (1%)
 Strand=Plus/Plus

Query  1    AAAAATGGGAAACTGTTTGATGGGAGGAAACAACGTTGCA-AAAATGGTTCAAGAAGACG  59
            |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
Sbjct  176  AAAAATGGGAAACTGTTTGATGGGAGGAAACAACGTTG-AGAAAATGGTTAAAGAAGAAG  234

Query  60   AGGTAATGAAGAAAGATTACAAGAGAAAAGATCGTAAAGTAAAGATTGTTTTGAGAAGAG  119
            | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  235  AAGTAATGAAGAAAGAATACAAGAGAAAAGATCGTAAAGTAAAGATAGTTTTGAGAAGAG  294

Query  120  ATGAGTTAGAGAAACTCATTCTTTTTCAGCTAAATGCCAACGGCAACGTTGACGGCAAAG  179
            |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct  295  ATGAGTTAGAGAAACTCATTCTTTTTCAGCTAAATGCCAATGGTAACGTCGACGGCAAGG  354

Query  180  GAGAGACAACTTTGGCTTCTTTTGGCGACTTTCTCAGGGAGTTAGAGGCGGAGAGATCTG  239
            |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  355  GAGAAACAACTTTGGCTTCTTTTGGTGACTTTCTAAGGGAGTTAGAGGCGGAGAGATCTG  414

Query  240  CAGGAGAAGCGGCTGCAAAGGCGGCTGAGGAAGAGGAGGAGTCTCGTCGGAGATGTCGTA  299
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  CGGGAGAAGCGGCTGCAAAGGCGGCTGAGGAAGAGGAGGAGTCTCGTCGGAGATGTCGTA  474

Query  300  AGTGGAGGCCCTCGTTGGAAAGAATCACTGAATGGCCTGAAGAAACACTTTCGTAATCAC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  475  AGTGGAGGCCCTCGTTGGAAAGAATCACTGAATGGCCTGAAGAAACACTTTCGTAATCTT  534

Query  360  TTTCTTTAATCCtttttttttttttttcatttaagat-aaggt-ttttatttttcttatt  417
            ||||||||||||||| |||||  |||| |   |   | ||| | ||||||||||||||| 
Sbjct  535  TTTCTTTAATCCTTTCTTTTTCGTTTT-AGAGATCTTGAAG-TCTTTTATTTTTCTTATG  592

Query  418  aaaatgggattttttgtgggggagtttgctcttttgctgattttttttccctttttttAC  477
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  593  AAAATGGGATTTTTTGTGGGGGAGTTTGCCCTTTTGCTGATTTTTTT-CCCTTTTTTTAC  651

Query  478  CGAGGGATATTTTTTCACCTGAGA  501
            ||||||||||||||||| ||||||
Sbjct  652  CGAGGGATATTTTTTCATCTGAGA  675


 Score =  145 bits (78),  Expect = 6e-34
 Identities = 94/101 (93%), Gaps = 4/101 (4%)
 Strand=Plus/Plus

Query  501  AAAAGGCTTATTTACCCCAGAGAAAATCCAAAGAAAAAACGAAATTATGTATTTTTATTT  560
            |||||||||||||||||||||||||||||  ||||||||||||||||||||  || ||||
Sbjct  703  AAAAGGCTTATTTACCCCAGAGAAAATCCTCAGAAAAAACGAAATTATGTA--TTCATTT  760

Query  561  TCGTCTTTCATGTAAGGTTCAATTTGTCGA-CATAAATAAA  600
            |||||||||||||||||||||||||||| | ||||||||||
Sbjct  761  TCGTCTTTCATGTAAGGTTCAATTTGTC-ATCATAAATAAA  800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28884634525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5