BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492483
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23860.1 | Symbols: | PHD finger protein-related | chr4:124... 2235 0.0
> AT4G23860.1 | Symbols: | PHD finger protein-related | chr4:12409007-12411570
FORWARD LENGTH=1790
Length=1790
Score = 2235 bits (1210), Expect = 0.0
Identities = 1489/1620 (92%), Gaps = 34/1620 (2%)
Strand=Plus/Plus
Query 43 GTG-AGAAT--TTGTGAAAATGGCATCGGGTGATTTCGAGGATGATGCTGAGGGAACTGT 99
||| ||||| ||| || ||||||||| |||| |||||||||||| ||||| |||||| |
Sbjct 179 GTGAAGAATAATTGCGACAATGGCATCTGGTGTTTTCGAGGATGAAGCTGAAGGAACTAT 238
Query 100 AACTATCAATGAATATATCGAAAGCCTTGACGCAGAAGAGCTGGCAGCGGATTTGGTGCT 159
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 239 AACGATCAATGAATATATCGAAAGGCTTGACGCAGAAGAGCTGGCAGCGGATTTGGTGTT 298
Query 160 GGGTGGAGATGAGGGAGATGAGTGTACTTACCCTAAGGGTTACATGAAAAGACAAGCAAT 219
|||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 299 GGGTGGAGATGAAGGAGATGAGTGTACTTTCCCAAAGGGTTACATGAAAAGGCAAGCAAT 358
Query 220 TTTCTCATGCATTACATGTACACCAGATGGGAATGCTGGAATTTGCACTGCTTGTTGTTT 279
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 359 TTTCTCATGCATTACATGTACACCAGAGGGGAATGCTGGAATTTGCACTGCTTGTTGCTT 418
Query 280 ATCTTGTCATGATGGCCATGAGCTCTTGGAGCTGTGGACTAAGAGAAATTTTCGATGTGA 339
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTTGTCATGATGGCCATGAGCTTTTGGAGCTGTGGACTAAGAGAAATTTTCGATGTGA 478
Query 340 CTGTGGGAACTCAAAGTTTGGAACTTTGGCGTGTAAGCTTCTCCCGAGCAAAGATGTAGA 399
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 479 TTGCGGGAACTCAAAGTTTGGAACTTTGGCTTGTAAGCTTCTCCCGAGCAAAGATATAGA 538
Query 400 AAACTCTGAGAATTCTTACAACCATAATTTCAAAGGCTTGTACTGCACTTGTGACCGACC 459
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 AAACTCTGAAAATTCTTACAACCATAATTTCAAAGGCTTGTACTGCACTTGCGACCGACC 598
Query 460 TTACCCTGACCCAAATGTGGAAGAGCAAGTGGAGATGATTCAGTGTTGTCTCTGTGAGGA 519
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 599 TTACCCTGACCCAAATGTGGAAGAACAAGTAGAGATGATTCAGTGTTGTCTCTGTGAGGA 658
Query 520 TTGGTTTCATGAGGAGCATCTCGGTCTCAAACCTTCAGACTGTGTTGGTAGCCAGATCCC 579
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct 659 TTGGTTTCATGAGGAGCATCTCGGTCTCACACCTTCAGACAGTGTTGGTAGCCAGATTCC 718
Query 580 AAAGGATGAGGAAGGCGAACCGATCTATGAGGATTTCATTTGTCAAAACTGTTCCCCAGT 639
|| |||||||||| | || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 719 AAGGGATGAGGAAAGTGAGCCGATCTATGAAGATTTCATTTGTCAAAACTGCTCCCCAGC 778
Query 640 TTGTTCGTTTCTGTCACTTTATCCTGAGAAATTGTGGGTTGTTGCTAAAGTAGAGTCCAC 699
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 779 ATGTTCGTTTCTGACACTTTATCCTGAGAACTTGTGGGTTGTTGCTAAAGTAGATTCCAC 838
Query 700 TGGTTCTGCTAATGCTTGTTCAGAGACAATTGAGTCAAG-CAAAACCCACATGGATTCTG 758
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 839 TGGTTCTGCTAATGCTTGTTCAGAGACAATTGAGT-TAGACAAAAACCACATGGATTCTG 897
Query 759 AACCCTGCCAGCCAGAGAATGGTTCTGATGCTGAGAAAGCTGTTGTAGGAAAATGTTCTG 818
||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 898 AACCCGGCCAGCCAGAGAACGGTACTGATGCTGAGAAATCTGTTGTAGGAAAATGTTCTG 957
Query 819 AGAAGATCGA-TGACTCTGAACCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAATCT 877
||| |||| | |||||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 958 AGACGATC-AGTGACTCAGAACCTGGCCAGCCTGAGAACGGCACTGAAGCCGAGAAATCT 1016
Query 878 GTTGTGCGGAAATGTTCTGAGAAGATTGATGACTCTGAACCCGGCCAGCCTGAGAACAGT 937
||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 1017 GTTGTGCAAAAATGTTCTGAGAAGATCGATGAATCTGAAGCCGGCCAGCCTGAGAACAGT 1076
Query 938 ACTGAAGCCGAGAATTTCGTTGTGCGAAAATGTTCTGAGAAGATAGATGACTCTGGTGGA 997
|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| || |
Sbjct 1077 ACTGAAGCCGAGAAATTCGTTGTGCGGAAATGTTCTGAGAAGATCGATGGCTC---TGAA 1133
Query 998 CCCGTTCCTGCAACTGGTTGCGTTATTAGGACTGATCTAAACTCGTGTCCTGAGTTTGAG 1057
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AATGTTCCTGCAGCTGGTTGTGTTATTAGGACTGATCTAAACTCGTGTCCTGAGTTTGAG 1193
Query 1058 AAGAAACCTTTGTTTTTGACCAAAAACTGGAGGAACATCCTATGCAAATGTGAAAAGTGC 1117
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1194 AAGAAACCTTTGTTTTTGACCAAAAACTGGAGGAACATCCTATGCAGATGCGAAAAGTGC 1253
Query 1118 CTTGAGATGTATAAGCAGAGAGGGGTAAGCTATCTACTTGACGTAGAGGACACGATTGTT 1177
||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||
Sbjct 1254 CTTGAGATGTATAAGCAGAGAAAGGTAAGCTATCTACTTGATGCAGAGGACACAATTGTT 1313
Query 1178 GAATACgagaagaaggcgaaggagaaaagaacagagaaactggagaaacaagaaggtgaa 1237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAATACGAGAAGAAGGCGAAGGAAAAAAGAACAGAGAAACTGGAGAAACAAGAAGGTGAA 1373
Query 1238 gCACTTGATCTTCTAAATAATCTCGACCACGTATCCAAAGTTGAGCTTCTTCACGGTATC 1297
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1374 GCACTTGATCTTCTGAATAATCTAGACCACGTATCCAAAGTTGAGCTCCTTCACGGAATC 1433
Query 1298 AAAGACTTCCAAGACGAACTCCAGGGTTTAATGGAGTCTGCTGGGCCGTCAAAGGCAATA 1357
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1434 AAAGACTTCCAAGACGGACTCCAGGGTTTAATGGAGTCTGCTGGGCCATCAAAGGCGATA 1493
Query 1358 ACAGCTGAAGATATCGAGCAAATGTTTTCGAAACTGAAGAACAAACGCAAAAGGATGGAG 1417
|| ||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1494 ACTTCTGCAGATATCGAGCAAATGTTTTCAAAACTGAAAAACAAACGTAAAAGGATGGAG 1553
Query 1418 TGAGAGGAGTTATGAGTTTTAAGGTAGTAAATCTTTCTCTTGG-CATCTCATGTTAACTT 1476
||||||||||||| | |||||||||| ||||||| || | ||| ||||||||||||
Sbjct 1554 TGAGAGGAGTTAT-A-----AAGGTAGTAAGTCTTTCT-TTCGACATTTCATGTTAACTT 1606
Query 1477 TATTTAGATAT--GTTGTTTCGTTGGTTTGAAATGA-G---GAGG---TTTCT--CGT-T 1524
| ||||||||| ||||||||||||||||||||||| | |||| ||||| | | |
Sbjct 1607 TTTTTAGATATATGTTGTTTCGTTGGTTTGAAATGAAGAATGAGGAGGTTTCTTTCCTCT 1666
Query 1525 -CCTCTGCTCTTATCTGTCTTTAGTTTCCTAAGTTATGCGAAC-AACTTTTTACTTCAGT 1582
||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||| |||
Sbjct 1667 TCCTCTGCTCTTGTCTGTCTTTAGTTTCCTAAGTAATGC-AACCAACTTTTTACTTTAGT 1725
Query 1583 GTATGAAGTTTGTAGCTTATGAAACAGTTGACTATTTATATATAATAAGCTACTAGTTCT 1642
| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1726 GCATGAAGTTTGTAGCTTATGAAACAGTCGACTACT-ATATATAATAAGCTACTAGTTCT 1784
Score = 195 bits (105), Expect = 2e-48
Identities = 144/162 (89%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 758 GAACCCT-GCCAGCCAGAGAATGGTTCTGATGCTGAGAAAGCTGTTGTAG-GAAAATGTT 815
||| ||| ||||||| ||||| || |||| || |||||| ||||||| | ||||||||
Sbjct 975 GAA-CCTGGCCAGCCTGAGAACGGCACTGAAGCCGAGAAATCTGTTGT-GCAAAAATGTT 1032
Query 816 CTGAGAAGATCGATGACTCTGAACCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAAT 875
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTGAGAAGATCGATGAATCTGAAGCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAAT 1092
Query 876 -CTGTTGTGCGGAAATGTTCTGAGAAGATTGATGACTCTGAA 916
| |||||||||||||||||||||||||| |||| |||||||
Sbjct 1093 TC-GTTGTGCGGAAATGTTCTGAGAAGATCGATGGCTCTGAA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5