BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492485
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23840.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2667 0.0
> AT4G23840.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:12400345-12403403 FORWARD LENGTH=2041
Length=2041
Score = 2667 bits (1444), Expect = 0.0
Identities = 1736/1873 (93%), Gaps = 36/1873 (2%)
Strand=Plus/Plus
Query 19 GATTGGAGATGGAGAGTGCATTGGTGCGTCTATGCATAGAGGAAGCTTGTAAGAGCGGAG 78
||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||
Sbjct 27 GATTGGAGATGGAGAGTCCTTTGGTGCGTCTATGCTTAAAGGAAGCTTGTAAGAGCGGAG 86
Query 79 ATGCGGTGGAACGATGGCGACTTCAGCGGCGGAGTCTTGAGAGGCTGCCTCCTCACCTTG 138
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 87 ATGCGGTGGAACGATGGCGACTTCAGCGGCGTAGTCTTGAGAGTCTGCCTCCTCACCTTG 146
Query 139 CCGATGCTCTCCTCCGTCGCCTTCTCCACAAGCGGCTTCTTTTCCCTTCGTTACTCGAAG 198
| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 147 CTGATGCTCTCCTCCGTCGCCTCCTCAAAAAGCGGCTTCTTTTCCCTTCGTTACTCGAAG 206
Query 199 GATTTAAACATTCTGTAGAGAATATAGATCTCCGAGGCGAAAGCTCAATTAACGCTGAAT 258
|||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 207 GATTCAAATATTCTGTAGAGAATATAGATCTCCGAGGCAAAAGCTCAGTTAACGCAGAAT 266
Query 259 GGATGGCTTACATTGGAGGCTTTGTTAATCTAATTTCTCTAAATCTTTCAGATTGCCAGA 318
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 267 GGATGGCTTACATTGGAGGCTTCGTTAATCTAATTACTCTAAATCTTTCAGATTGCCAGA 326
Query 319 GAATCAACAGTTCCACCCTCTGGCCGATCACAGGATTAACAAGTTTGACAGAGTTGGATC 378
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 327 GAATCAACAGTTCCACCCTCTGGCCTATCACAGGATTAACAAGTTTGACAGAGTTGGACC 386
Query 379 TTTCAAGATGCTTT-AAGGTTACGGATGCTGGTATAAAGCACCTCCAATCTGTTGTAAAT 437
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 387 TTTCAAGATG-TTTCAAGGTTACGGATGCTGGTATGAAGCACCTCCAATCTGTTGTAAAT 445
Query 438 CTGAAAAAGTTGTGGATTTCACAGACAGGTGTTACTAAAGTTGGAATTTCTCTTCTTGCT 497
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 446 CTGAAAAAGTTGTGGATTTCACAGACAGGTGTCACTGAAGTTGGAATTTCTCTTCTTGCT 505
Query 498 TCACTTCAAAAGTTGTCTCTTTTGGATTTGGGCGGCTTACCTGTAACTGATCACAACTTG 557
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 506 TCACTTAAAAAATTGTCTCTTTTGGATTTGGGCGGCTTACCTGTAACTGATCAGAACTTG 565
Query 558 ATTGCTCTTCAGGCACTGACAAAGCTAGAGTACCTTGACATCTGGGGAAGCAACGTAACC 617
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 ATTTCTCTCCAGGCACTGACAAAGCTAGAGTACCTTGACATCTGGGGAAGCAACGTAACC 625
Query 618 AACCAAGGAGCTATCAGTATTCTCCAATTTTCAAACTTGAGCTTCCTAAACCTCTCGTGG 677
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 626 AACCAAGGAGCTGTCAGTATTCTCAAATTTTCTAACTTGAGCTTCCTAAACCTCTCGTGG 685
Query 678 ACAAGCGTCACACAGACTCCAAACATACCGCACCTTGAATGCTTACACATGAACATGTGC 737
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 686 ACAAGCATCACACAGACTCCAAACATTCCGCACCTTGAATGCTTACACATGAACACGTGC 745
Query 738 ACCATTGTCTCCGAACCAAAAACTCATTGCTCATTAGCTTCCTTGAAAAAGCTAGTTTTA 797
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 746 ACCATTGTCTCCGAACCAAAAACTCATAGCTCATTAGCTTCCTTGAAAAAGCTAGTTTTA 805
Query 798 TCGGGAGCTAATTTCAGTGCCGAAACAGAGGCCTTGTCCTTTACCAACAAAAGCTCTATA 857
||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 806 TCGGGAGCTAATTTCAGTGCCGAGACAGAGTCCTTGTCCTTTACCAACAAAAGCTGTATA 865
Query 858 ACCTACTTAGACGTTTCCAAGACTTCCCTCCAAAACTTCAGCTTCTTAGAAACTATGATT 917
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 866 ACCTACTTAGACGTTTCCAAGACTTCCCTCAAAAACTTCAGCTTCTTAGAAACTATGTTT 925
Query 918 AACCTAGAACATCTTGATCTGAGCTCCACAGCTTTCGGCGATGATTCTGTTGGGTTTGTA 977
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 926 AACCTAGAACATCTTGATCTGAGCTCCACAGCTTTCGGGGATGATTCTGTTGGGTTTGTA 985
Query 978 GCATGTGTTGGTGAGAATCTGAGGAATCTTAATGTCTCGGATACAAAAATTACTTCTGCT 1037
|||||||||||||||||||| | |||||||||||||||||||||| |||| ||| || ||
Sbjct 986 GCATGTGTTGGTGAGAATCTAAAGAATCTTAATGTCTCGGATACACAAATCACTCCTTCT 1045
Query 1038 GGGGTTGGGAATCTTGCAGGACATGTGCCGCAACTCGAGACATTCTCTCTGTCTCAGACA 1097
||||| ||||||||||| ||||||||||| ||||| |||||||| ||| |||| ||||||
Sbjct 1046 GGGGTCGGGAATCTTGCTGGACATGTGCCACAACTTGAGACATTATCTATGTCCCAGACA 1105
Query 1098 TTTGTCGACGATCTTTCCATCTTGCTTATCAGCACCATGATGCCTTGCGTTAAAGCCCTT 1157
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1106 TTTGTCGACGATCTTTCCATCTTGCTTATCAGCACCACGATGCCTTGCATTAAAGCCCTT 1165
Query 1158 GACTTGGGCAT-----G-A-CC-A-G--------------TATC-CGAGAAGAACAAGCA 1193
||||||||||| | | || | | |||| | | ||||| || |
Sbjct 1166 GACTTGGGCATGAACAGCACCCTAGGATTCTACTATCTAATATCTCCACAAGAAGAAAAA 1225
Query 1194 GAGCCGTCGTTAGCAGCACTACAGTCTCTAACTTCCCTTAAAACCCTGAGTCTAGAACAT 1253
||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1226 GAGAAGTCACTAGCAGCACTACAATCTCTAACTTCCCTTGAAACCCTGAGTCTAGAACAT 1285
Query 1254 CCGTACCTGGGCGACACAGCTCTTTCCGCTCTAAGTAGCCTTACTGGATTAACACATTTG 1313
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1286 CCGTACCTGGGTGACAAAGCTCTTTCCGGTCTAAGTAGCCTTACTGGATTAACACATTTG 1345
Query 1314 TCCCTAAGAAGCACATCCCTCACAGATTCCACACTCCACCATCTCTCCTCTCTTCCAAAC 1373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TCCCTAACAAGCACATCCCTCACAGATTCCACACTCCACCATCTCTCCTCTCTTCCAAAC 1405
Query 1374 CTAGTCAGTCTCGGAGTCCGAGATGCAGTTTTGACCAGCAATGGTCTCGAGAAGTTTAGG 1433
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1406 CTAGTCAGTCTCGGAGTCCGAGATGGAGTTTTGACCAGCAATGGTCTTGAGAAGTTTAGA 1465
Query 1434 CCGCCTAAAAGGCTGAGAACACTAGACCTCAAAGGTTGTTGGCTTTTAACCAAGGATGAT 1493
|| ||||| ||||| |||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 1466 CCACCTAACAGGCTAAGAACACTCGACCTCCAAGGTTGTTGGCTTTTAACCAAAGATGAT 1525
Query 1494 ATCGCTGGTCTCTGCAAAAGGTACCCTCACATCAAAGTGAGGCATGAGCATGACA-ACTC 1552
|| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 1526 ATTGCTGGTCTCTGCAAAAGGTACCCTCACATCAAGGTGAGGCATGAGCATG-CTGACTC 1584
Query 1553 TTCTTCTCTCGACCAAAACCAACTTCTTCCTCGGTCATCCACGCCACAGAGTTTCGGAAA 1612
||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||
Sbjct 1585 TTCTTCTCTCGACCAGAATCAACTTCTTCCTCGGTCATCTACTCCACAGAGTTTTGGAAA 1644
Query 1613 GGTACCTAGGAGGAGCAACAACCAGAGGCCGGAGAGTTCTGTTGCTGTTCCCAGGAGTTT 1672
|||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GGTAGCAAGGAGGA--A-CAACCAGAGGCCGGAGAGTTCTGTTGCTGTTCCCAGGAGTTT 1701
Query 1673 CTTAGATCAGAGGGTGAAGTATAATAGGGAAGAGTTGGTTGCTCTACAAAAGTCGCCTTT 1732
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1702 TTTAGATCAGAGGGTGAAGTACAATAGGGAAGAGTTGGTTGCTCTACAAAATTCGCCTTT 1761
Query 1733 ATCACAATTGCTGCCACGGGAAGAACTTGTCAGTGTACCTGATA-TTCTAGCTGATTCCG 1791
|||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||||
Sbjct 1762 ATCACAATTGCTGCCATGGGAAGAACTTGTCAGTGTACCGGA-ACTTCTTGCTGATTCCG 1820
Query 1792 TGATTTGAAGCAAAATGGT-TGAACAAGTAATATTTTAGTAACACCTGAAATGAATTAGG 1850
|||||||||||||| ||| ||||||||| ||||||||| |||||||| ||||||||
Sbjct 1821 TGATTTGAAGCAAA-TGGGGTGAACAAGTTGGATTTTAGTACCACCTGAA-TGAATTAGT 1878
Query 1851 AGAGATCTTAGCA 1863
|||||||||||||
Sbjct 1879 AGAGATCTTAGCA 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92218401165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5