BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492486
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23820.1 | Symbols: | Pectin lyase-like superfamily protein... 2298 0.0
> AT4G23820.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:12397038-12400091 REVERSE LENGTH=1555
Length=1555
Score = 2298 bits (1244), Expect = 0.0
Identities = 1390/1462 (95%), Gaps = 4/1462 (0%)
Strand=Plus/Plus
Query 1 AGATTTTACTCTCATCCTAAATAAACCTCTCTACAACGAAAATGTGGAGACTCTCTGTTT 60
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1 AGATTTTACTCTCATCCTAAATAAACCTCTCTTCATCGAAAATGTGGAGACTCTCTGTGT 60
Query 61 CAATTTTCCTCTTCTCATGCCTCGCCGTTTCTTCTTCGTCGTACGGCGATTCGGAGGCTA 120
||||||||||||||||||| ||| ||||||||| || |||| |||||||||||||| |
Sbjct 61 CAATTTTCCTCTTCTCATGTCTCTTCGTTTCTTCGTCTTCGTTGGGCGATTCGGAGGCGA 120
Query 121 CGTGTTCCGGTATAGTCCCGTTGCGGTACCGGTACGATAAGATCTCGATAACCGACTATG 180
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 121 CGTGTTCCGGTATAGTTCCGTTACGGTACCGGTACGATAAGATCTCGATAACCGACTTTG 180
Query 181 GCGGCGTTGGAGATGGTCGGACGGTGAATACGAAGGCGTTTAGAGCGGCGATTTA-CAGG 239
| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | ||
Sbjct 181 GAGGCGTTGGAGATGGTCGAACGGTGAATACTAAGGCGTTTAGGGCGGCGATTTATC-GG 239
Query 240 ATTCAGCATTTGAAGAGGAGAGGAGGCACGCTTTTGTATATACCACCGGGAGTGTATTTG 299
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 ATTCAGCATCTGAAGAGGAGAGGAGGCACGCTTTTGTATATACCTCCGGGAGTGTATTTG 299
Query 300 ACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATT 359
Query 360 AGAGCTGTTCAGGATACCTGGAACTGGCCATTGATAGATCCTTTGCCGTCTTATGGAAGA 419
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 360 AGAGCTGTTCAGGATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGA 419
Query 420 GGAAGAGAGTTACCAGGGGGACGGTATATGAGCTTTATTCATGGCGATGGGCTTCGTGAT 479
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GGGAGAGAGTTACCAGGGGGACGGTATATGAGCTTTATTCATGGTGATGGGCTTCGTGAT 479
Query 480 GTAGTCATCACCGGACAAAACGGGACAATAGACGGTCAAGGAGAAGTGTGGTGGAACATG 539
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTAGTCATCACTGGACAAAATGGGACAATAGACGGTCAAGGAGAAGTGTGGTGGAACATG 539
Query 540 TGGCGCAGTAGAACTCTAAAGTACACAAGACCAAACTTAATTGAGTTCAAGGACTCTAAG 599
||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 540 TGGCGTAGTAGAACGCTAAAGTACACAAGACCGAACTTAATCGAGTTCAAGGACTCTAAG 599
Query 600 GAGATCATAATCTCCAATGTTATTTTCCAAAATTCACCCTTCTGGAACATTCATCCTGTG 659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 GAGATCATAATCTCCAATGTTATTTTCCAAAATTCACCTTTCTGGAACATTCATCCTGTG 659
Query 660 TATTGCAGCAACGTTGTAATCCATCACGTTACCATCTTAGCTCCACAAGATTCTCCCAAC 719
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TATTGCAGCAACGTTGTCATCCATCACGTTACGATCTTAGCTCCACAAGATTCTCCCAAC 719
Query 720 ACCGATGGAATCGATCCAGATTCCAGCTACAACGTCTGCATAGAAGACTCCTACATTTCA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 ACCGATGGAATCGATCCAGATTCCAGCTACAACGTCTGCATAGAAGACTCCTACATCTCA 779
Query 780 ACAGGAGACGACCTAGTGGCCATCAAAAGCGGTTGGGACGAGTATGGAATCGCCTATGGC 839
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 780 ACAGGAGACGACCTAGTGGCCATCAAAAGCGGTTGGGACCAGTACGGAATCGCCTATGGC 839
Query 840 CGTCCAAGCTCAAACATAACCATCCGCCGCATCACAGGATCTTCCCCGTTCGCAGGTATC 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTCCAAGCTCAAACATAACAATCCGCCGCATCACAGGATCTTCCCCGTTCGCAGGTATC 899
Query 900 GCAATAGGAAGCGAAACATCAGGAGGAATCAAGAACATCGTAGCAGAACACATAACTCTC 959
|||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 900 GCAATAGGAAGCGAAACATCAGGAGGAATCAAGAACATTATAGCAGAACATATCACTCTC 959
Query 960 TCCAATATGGGAGTTGGAGTTAACATCAAAACAAACATTGGTCGTGGAGGATACATTAAA 1019
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TCCAATATGGGAGTTGGAGTCAACATCAAGACAAACATTGGTCGTGGAGGATACATTAAA 1019
Query 1020 AACATCAAAATCTCAGACGTCTATATAGATACCGCAAAGTATGGGATCAAGATCGCCGGT 1079
||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1020 AACATCAAAATATCAGACGTCTATGTAGACACCGCAAAGTATGGGATCAAGATCGCCGGC 1079
Query 1080 GACACAGGAGATCACCCAGACGAGAATTATAACCCGAACGCTCTTCCAATCGTTAAGGGA 1139
||||| |||||||| || |||||||||||||||||||||||||||||| | |||||||||
Sbjct 1080 GACACGGGAGATCATCCGGACGAGAATTATAACCCGAACGCTCTTCCAGTTGTTAAGGGA 1139
Query 1140 ATACATATCAAGAACGTTTGGGGAGTTAACGTTCGAAACGCAGGCTCTATTCAAGGCCTT 1199
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1140 ATACATATCAAGAACGTTTGGGGAGTTAACGTTCGAAACGCTGGCTCTATTCAAGGTCTT 1199
Query 1200 AAGGGCTCACCTTTTACAGGTATATGTTTGAGTGAGATAAATCTACATGGAAGCTTGAAT 1259
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 AAGGGCTCACCATTTACGGGTATATGTTTGAGTGAGATTAATCTACATGGAAGCTTGAAT 1259
Query 1260 TCGTATAAGACGTGGAAGTGTTCGGATGTCATTGGAACTTCACTGAAGGTCAGTCCTTGG 1319
||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct 1260 TCGTATAAGACGTGGAAGTGTTCGGATGTCAGTGGAACTTCACTAAAGGTTAGTCCTTGG 1319
Query 1320 CCGTGTTCGGAGCTGAGAACTACCGGCGGATCTTATTCGTGTTCTTCCACATTCTGAAAA 1379
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||
Sbjct 1320 CCGTGTTCGGAGCTGAGAACTACCGGCGGGTCTAATTTGTGTTCTTCCACATTCTAAAAA 1379
Query 1380 CTTCTGAGCAAGTTTTTACCTCTTTGGTTCAATTTTTTAA--AAATAATTTATCTCCAGT 1437
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 CTTCTGAGCAAGTTCTTACCTCTTTGGTTCAATTTTTTTTTGAAATAATTTATCTCCAGT 1439
Query 1438 TTGCAGTTCCTCCATTAATATA 1459
|||||||||||||||| |||||
Sbjct 1440 TTGCAGTTCCTCCATTTATATA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5