BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492487
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23810.1 | Symbols: WRKY53, ATWRKY53 | WRKY family transcrip... 1568 0.0
AT4G23800.1 | Symbols: | HMG (high mobility group) box protein... 381 1e-104
AT4G11070.1 | Symbols: WRKY41, AtWRKY41 | WRKY family transcrip... 342 5e-93
> AT4G23810.1 | Symbols: WRKY53, ATWRKY53 | WRKY family transcription
factor | chr4:12392370-12393982 REVERSE LENGTH=1514
Length=1514
Score = 1568 bits (849), Expect = 0.0
Identities = 1110/1232 (90%), Gaps = 34/1232 (3%)
Strand=Plus/Plus
Query 1 CCTATAACACTCTCATTCTCATCATATCATTCTTCAATCTATATAACTTATTCTTGATTA 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 4 CCTATAACACTCTCATTCTCATCATATCATTCTTCAATCTATATAACCCATTCTTAATTA 63
Query 61 TA--C--CACACATTATA--TTTCTGATCATATCATTC-TTCAATCTTATCTATATAACC 113
|| | ||||||||||| |||||||||||||||||| |||| || ||||||||||||
Sbjct 64 TACTCAACACACATTATATTTTTCTGATCATATCATTCTTTCAGTC-CATCTATATAACC 122
Query 114 CGTTATTCATTTATATCTTTTTCA-ACATATTTTGGTATCATTGGTGAAT-A-AGATTTT 170
|| || ||||||| | || | ||| ||| | ||| || | || | || |||
Sbjct 123 AATTCTTGATTTATA-C-TTAAAACACACATTAT-ACATC-TTTCT-CATCATAG-TTTG 176
Query 171 TAAAAAGTTT--TTGAGaaaaaaaaaaTAATTG---AAAAAATTCTATTTTGGGAATCAT 225
|| || ||| | ||| ||| | ||| | |||||| ||||||||||||||||
Sbjct 177 TATCAA-TTTCCTAGAG-TAAACTACCTAAAGGAAAAAAAAAATCTATTTTGGGAATCA- 233
Query 226 TA-ACTCAAAATGGAAGGTAA-AGATTTGTTAAGTTGGGAGCAAAAGACATTGCTAAGCG 283
|| ||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 234 TATACTAAAAATGGAAGG-AAGAGATATGTTAAGTTGGGAGCAAAAGACATTGCTAAGCG 292
Query 284 AGCTTATCAATGGATTTGAGGCGGCCAAAAAGCTTCAGGCACGAATCGGAGAAGCTCCGT 343
||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 293 AGCTTATCAATGGATTTGATGCGGCCAAAAAGCTTCAGGCACGACTTAGAGAAGCTCCGT 352
Query 344 CGCCATCATCATCATTTTTATCTCCGGCGACGGCTGTGGCTGAGACTAATGAGATTCTGG 403
|||| || |||||||||| ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 353 CGCCGTCGTCATCATTTTCATCACCGGCGACGGCTGTTGCTGAGACTAACGAGATTCTGG 412
Query 404 TGAAACAGATAGTTTCTTCCTACGAGAGATCTCTTCTTCTACTAAACTGGTCATCCTCAC 463
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 413 TGAAGCAGATAGTTTCTTCCTACGAGAGATCTCTTCTTCTGCTAAACTGGTCATCCTCAC 472
Query 464 CGACCGTACAACTTATTCCGACGCCGGCTACTGTAGTCCCGGTGGCGAATTCCGGCAGTG 523
||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct 473 CGAGCGTACAACTTATTCCGACGCCGGTTACTGTAGTCCCGGTGGCAAATCCCGGCAGTG 532
Query 524 TTCCAGAATCTCCGGCATCGATTAACGGAAGTCCGAGGAGTGAAGAGTTTGCCGATGGAG 583
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 533 TTCCAGAATCTCCGGCATCGATAAACGGAAGTCCGAGAAGTGAAGAGTTTGCCGATGGAG 592
Query 584 GAGGTTCTAGCGAGAGTCACCATCGCCAAGATTACATTTTCAATTCAAAGAAAAGGAAGA 643
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 593 GAGGTTCTAGCGAGAGTCATCATCGCCAAGATTACATTTTCAATTCAAAGAAAAGAAAGA 652
Query 644 TGTTACCAAAATGGTCAGAAAAAGTGAGAATTAGCCCAGAGAGAGGCTTAGAAGGACCTC 703
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 653 TGTTACCAAAGTGGTCAGAAAAAGTGAGAATAAGCCCAGAGAGAGGCTTAGAAGGACCTC 712
Query 704 AAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACATTTTAGGCGCCAAATTCC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACATTTTAGGCGCCAAATTCC 772
Query 764 CAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACTGTTGGGCAACGAAACAAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACTGTTGGGCAACGAAACAAG 832
Query 824 TCCAGAGATCGGACGGTGATGCAACGGTGTTCGAAGTTACGTACAGAGGAACACACACTT 883
|||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 833 TCCAGAGATCAGACGGGGATGCTACGGTTTTCGAAGTGACGTACAGAGGAACACACACTT 892
Query 884 GTTCGCAGGCGATCACACCACCGCCTCCACCAGCCTCGCCGGAGAAGAAGCAAGAAGAGA 943
||||||||||||||||| | | || ||| |||||||||||||||| | | |||| |
Sbjct 893 GTTCGCAGGCGATCACAAGAACACCACCATTAGCCTCGCCGGAGAAGC-G-AC-AAGACA 949
Query 944 CCAGAGTTAGACCAGCTATTTCCCAAAAGCCAAAGGATCTACTCGAGAGTCTTAAATCCA 1003
||||||| | |||||| ||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 950 CCAGAGTCAAACCAGCCATTACCCAAAAGCCAAAGGATATTCTCGAGAGTCTTAAATCCA 1009
Query 1004 ACTTAACCGTTCGAACCGATGGGCTTGATGATGGTAAAGACGTTTTCTCGTTCCCTAATA 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1010 ACTTAACCGTTCGAACCGATGGGCTTGATGATGGTAAAGACGTTTTCTCGTTCCCTGATA 1069
Query 1064 CGCCGCCGTTTTACACTTACGGGACTACCAACGGCGACTTCGGCCATGTGGAGAGTTCTA 1123
||||||||||||||| |||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 1070 CGCCGCCGTTTTACAATTACGGAACTATCAACGGCGAGTTCGGCCACGTGGAGAGTTCT- 1128
Query 1124 CTCCGATCTTTGACGTTGTTGATTGGTTCAATCCAATGGTTGAGATTGACACAACTTTCC 1183
| | |||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 1129 C-C-GATCTTCGACGTTGTTGACTGGTTCAATCCAACGGTCGAGATTGACACAACTTTCC 1186
Query 1184 CCACGTTTTTAAACGAGTCGATTTATTATTAA 1215
|| |||||||| ||||||||||||||||||||
Sbjct 1187 CCGCGTTTTTACACGAGTCGATTTATTATTAA 1218
Score = 394 bits (213), Expect = 1e-108
Identities = 226/232 (97%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 1216 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGAAAT 1275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1263 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGGAAT 1322
Query 1276 GTTCAACAGGACTTGAACATGTTTTCAATACTAAGAGAGAATTTATCTAGCTACTGGTAG 1335
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1323 GTTCAACAGGACTTGAACATGATTTCAATACTAAGAGAG-ATTTATCTAGCTACTGGTAG 1381
Query 1336 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1441
Query 1396 CGGCCTTTTTGTTGTAAACTTGTTTCTCTTCTTCACTCAATTCCTGCAAAGA 1447
|||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 CGGCCTTTCCGTTGTAAACTTGCTTCTCTTCTTCACTCAATTCCTGCAAAGA 1493
> AT4G23800.1 | Symbols: | HMG (high mobility group) box protein
| chr4:12390167-12392710 FORWARD LENGTH=1626
Length=1626
Score = 381 bits (206), Expect = 1e-104
Identities = 219/225 (97%), Gaps = 1/225 (0%)
Strand=Plus/Minus
Query 1216 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGAAAT 1275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1537 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGGAAT 1478
Query 1276 GTTCAACAGGACTTGAACATGTTTTCAATACTAAGAGAGAATTTATCTAGCTACTGGTAG 1335
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1477 GTTCAACAGGACTTGAACATGATTTCAATACTAAGAGAG-ATTTATCTAGCTACTGGTAG 1419
Query 1336 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1359
Query 1396 CGGCCTTTTTGTTGTAAACTTGTTTCTCTTCTTCACTCAATTCCT 1440
|||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1358 CGGCCTTTCCGTTGTAAACTTGCTTCTCTTCTTCACTCAATTCCT 1314
> AT4G11070.1 | Symbols: WRKY41, AtWRKY41 | WRKY family transcription
factor | chr4:6759303-6760794 FORWARD LENGTH=973
Length=973
Score = 342 bits (185), Expect = 5e-93
Identities = 246/276 (89%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 627 TTC-AAAGAAAAGGAAGATGTTACCAAAATGGTCAGAAAAAGTGAGAATTAGCCCAGAGA 685
||| ||| || ||||||||||| ||||| ||| |||| |||||||||||||||||||||
Sbjct 342 TTCTAAA-AAGAGGAAGATGTTGCCAAAGTGGACAGAGCAAGTGAGAATTAGCCCAGAGA 400
Query 686 GAGGCTTAGAAGGACCTCAAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACA 745
||||||||||||||||||| || ||| |||| ||||||||||||||||| || |||||||
Sbjct 401 GAGGCTTAGAAGGACCTCATGACGATATCTTCAGCTGGAGAAAATATGGCCAGAAAGACA 460
Query 746 TTTTAGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACT 805
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 461 TTTTGGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACT 520
Query 806 GTTGGGCAACGAAACAAGTCCAGAGATCGGACGGTGATGCAACGGTGTTCGAAGTTACGT 865
||||||| |||||||||||||| ||||||||||||||| ||||| | |||||||| || |
Sbjct 521 GTTGGGCTACGAAACAAGTCCAAAGATCGGACGGTGATCCAACGATCTTCGAAGTAACAT 580
Query 866 ACAGAGGAACACACACTTGTTCGCAGGCGATCACAC 901
|||||||||||||||||||||| |||| |||| |||
Sbjct 581 ACAGAGGAACACACACTTGTTCACAGGGGATCCCAC 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5