BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492489
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23790.1 | Symbols: TBL24 | TRICHOME BIREFRINGENCE-LIKE 24 |... 2124 0.0
> AT4G23790.1 | Symbols: TBL24 | TRICHOME BIREFRINGENCE-LIKE 24
| chr4:12387840-12389791 FORWARD LENGTH=1455
Length=1455
Score = 2124 bits (1150), Expect = 0.0
Identities = 1346/1441 (93%), Gaps = 12/1441 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCAGATGAAGCTGAAGTTGTCATCAATCTCCATGAATCATAAAAATGTGCTTCT 60
||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21 TCTTCTTGAGATGAAGTTGAAGTTGTCATCAATCTCCATGAATCATAAGAATGTGCTTCT 80
Query 61 CATCAAGCTCATCTCCGCTATTCTGATCA-CATTTTTCGCTTTCCGTCTCTTCATTCTCC 119
||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 81 CATCAAGCTCATCTCCGCTATTCTGAT-ATCTTTTTTCGCGTTCCGTCTCTTCATTCTCC 139
Query 120 ACTCTAGCGAGTTTTCTCCAATCTTTGCGTCGGTTACTGGAAAATTCGAAGCTCGGTTTT 179
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 140 ACTCCAGCGAGTTTTCTCCAATCTTTGCGTCGGTCACCGGAAAATTCGAAGCTCGGTTTC 199
Query 180 TGCCGCCGGAGGTTATTGTGCCGGAAAATGAAGATCTGATTCCTCAGGATATTGAAGTAG 239
||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 200 TGCCGCCGGAGATTATCGTACCGGAAAATGAAGATCTGATTCCTCAAGATATTGAAGTAG 259
Query 240 AGAAGTGTGATCTTTTCGCCGGAAAATGGATCCCAGATTCAGTAGGACCAATTTACACAA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 260 AGAAGTGTGATCTTTTCGCCGGAAAATGGATCCCAGATTCAGTAGGACCAATCTACACAA 319
Query 300 ACAACTCATGCGGATCGCTCATTGACGGTCACCAAAATTGTATCACCAATGGCCGGCCTG 359
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACAAATCATGCGGATCACTCATTGACGGTCACCAAAATTGTATCACCAATGGCCGGCCTG 379
Query 360 ACTTAGATTTTCTCTACTGGAAATGGAAGCCTCATGACTGTTTGTTACCACGTTTTGACC 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 380 ACTTAGATTTTCTCTACTGGAAATGGAAACCTCATGACTGTTTGTTACCACGTTTTGACC 439
Query 420 CTCGAAGATTTCTTCAACTTATGAGGAATAAATCTTGGGCATTGATTGGTGACTCCATAT 479
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 440 CTAGAAGATTTCTTCAACTTATGAGGCATAAATCTTGGGCATTTATTGGTGACTCCATAT 499
Query 480 CGCGTAACCACGTCGAGTCACTGCTTTGTATGCTCTCTACGGTTGAAGAACCTGTTGAAG 539
| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 500 CTCGTAACCACGTCGAATCACTGCTTTGTATGCTCTCTACGATTGAAGAACCGGTTGAAG 559
Query 540 TATACCACGACAAGGAGTACAAATCGAAACGTTGGCATTTCCCTTTACATAACCTTACTA 599
||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 560 TATACCATGACATGGAGTACAAATCAAAACGTTGGCATTTCCCTTTACATAACCTTACTG 619
Query 600 TATCCAACATTTGGTCACCATTTCTTGTTCAAGCCGCTATTTTCGAAGATTCAAACGGTG 659
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 620 TATCCAACATATGGTCGCCATTTCTTGTTCAAGCCGCTATTTTCGAAGATTCTAACGGTG 679
Query 660 TCTCGACCGCTTCTGTTCAGCTACATCTGGATAAACTCGATGAGACATGGACCAATCTTA 719
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
Sbjct 680 TCTCGACCGCTTCTGTTCAGCTACATCTTGATAGACTCGATGAGACATGGACCAGTCTCA 739
Query 720 TGCCTAGCCTCGACTATGCGATTATCTCAACAGGTAAATGGTTTCTTAAATCCGCGATTT 779
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 740 TGCCTAGCTTCGACTATGCGATCATCTCAACCGGTAAATGGTTTCTTAAATCCGCAATTT 799
Query 780 ACCATGAAAATGGAAAACCCGTCGGTTGCCATAACTGCCAGGAAAAACCTCACATA-ATA 838
|||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||| | |
Sbjct 800 ACCACGAAAATGCAAAACTCGTCGGTTGCCATAACTGTCAGGAAAAACCTCACATAGA-A 858
Query 839 GAGTTAGGATTTGACTATGCTTATAATGCATCGCTGCGGAATGTCATGGACTTCCTAGCT 898
||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||
Sbjct 859 GAGTTAGGATTCGACTATGCTTATAACGCATCGCTGCATAATGTCATGGACTTTCTAGCA 918
Query 899 GGGGAAGATAATAGTAAAGGCACGGtttt-tttCCGGACTTCGACTCCCGATCATTTCCA 957
| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 919 GCTGAAGATAACAGTAAAGGCACGGTTTTCTTTC-GGACTTCGACTCCCGATCATTTCCA 977
Query 958 AAACGGGGAATGGCATAGCGGCGGGACATGTAAGCAAACAGAGCCGGTGAGCGATGAGGA 1017
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 978 AAACGGGGAATGGCATAGTGGCGGGACGTGTAAGCAAACAGAGCCGGTGAGCGATGAGGA 1037
Query 1018 GATTGAGATTAAGGATGTACATAAGATACTAAAAGACATTGAGATTGGTCAGTTTAAGAG 1077
|||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 1038 GATTGAGATTAAGGATGTACATAAGATACTAAAAGATATTGAGATTGATCAGTTCAAGAG 1097
Query 1078 GGCGGTTAGAGAGAAGACTGGCCAGGATGGTGGAAATCTAAAGCTTTTGGATTTCACCGG 1137
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
Sbjct 1098 GGCGGTTAGAGAGAAGACTAACCAGGACGGTGGGAATCTAAAGCTTTTGGATTTCACCCG 1157
Query 1138 GATGTTGCTGACCCGACCTGATGGTCATCCGGGTGCGTACCGACAATTCAGGCCGTTTGA 1197
|||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1158 GATGTTGCTGACCCGACCGGACGGTCATCCGGGTGAGTACCGACAGTTCAGGCCGTTTGA 1217
Query 1198 TAAAGACAAAAATGCAAAGGTACAAAACGACTGTCTGCATTGGTGTTTGCCTGGTCCGTT 1257
|||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||
Sbjct 1218 TAAAGACAAAAATGCAAAGGTACAGAACGATTGTTTGCATTGGTGCTTGCCTGGTCCGTT 1277
Query 1258 TGATTACTTGAATGATGTTATATTGGAGACCATAGTAAATGGCTGA-ACCGG-ACCACCA 1315
|||||||||||||||||||||||||||||| ||||||||||||||| | || || || |
Sbjct 1278 TGATTACTTGAATGATGTTATATTGGAGACTATAGTAAATGGCTGAGA--GGCAC-AC-A 1333
Query 1316 AAATGTGATTGGTACATCGCCAATCGAAAACCGGTTCTCTGGAGTTACATAGTCTAATAC 1375
||||||||||||||||| |||| | ||||||||||||| |||| || |||| |||||||
Sbjct 1334 AAATGTGATTGGTACATGGCCAGTGGAAAACCGGTTCTATGGAAATAAATAGACTAATAC 1393
Query 1376 GGCGCAAATTTGTGTGAATTGGAAACATGTAAAATTATGTAAGAAAATTTGAGATAATGT 1435
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1394 TGAACAAATTTGTGTGAATTGGAAACATGTAAAATTATGTAAGAAAAATTGAGATAATGT 1453
Query 1436 G 1436
|
Sbjct 1454 G 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5