BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492491
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23750.1 | Symbols: CRF2, TMO3 | cytokinin response factor 2... 2239 0.0
> AT4G23750.1 | Symbols: CRF2, TMO3 | cytokinin response factor
2 | chr4:12376194-12378024 FORWARD LENGTH=1831
Length=1831
Score = 2239 bits (1212), Expect = 0.0
Identities = 1543/1694 (91%), Gaps = 57/1694 (3%)
Strand=Plus/Plus
Query 1 CTGCCGCTTTTAAATCTCTCATCTTCTTCCTCGTGTCACTCTTTCTCTCACACTCTGC-A 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CTGCCGCTTTTAAATCTCTCATCTTCTTCCTCGTGTCACTCTTTCTCTCACACTCTGCAA 60
Query 60 AAACATTTTCTTG--TCT-CTCTGCCCAAA-TTTTTAT-TTTCCAGGAATATTACCTAGA 114
||||||||||||| ||| ||||||||||| ||||| | |||||||||||||| ||||||
Sbjct 61 AAACATTTTCTTGTCTCTCCTCTGCCCAAATTTTTTTTCTTTCCAGGAATATTTCCTAGA 120
Query 115 AAAACCCAAGCAAAGCTTTTAATCCCTTCCTCCCCCAAAAGTAGCATCTTCCTCtttttt 174
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 121 AAAACCCAAGCAAAGC-TTTAACCCCTTCCTCCTCCAAAAGTAGCATCTTCCTCTTTTTC 179
Query 175 tttttCTCCTTTCCTCTCCTTATCTCTCTCTCGTTTGTGAACGATTCCTTAAGAATATAA 234
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATTTCTCCTTTCCTCTTCTTATCTCTCTCTCGTTTGTGAACGATTCCTTAAGAATATAA 239
Query 235 CTAAAAGCTCTTTTCCCCTTTCTTCAACTTTCCGGG-AAAATCTTCACGCAGCAAGGTTT 293
| |||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 CCAAAAGCCCTTTTCTCCTTTCTTCAACTTTCCGGGAAAAATCTTCACGCAGCAAGGTTT 299
Query 294 CTC-CT---CTCTCGCAGTGTTTTTCGTGCCTTTTAGTTCTTTCTATaaaaaaaaaaTTC 349
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CTCTCTCGGCTCTCGCAGTGTTTTTCGTGCCTTTT-GTTCTTTCTATAAAAAAAAAATTC 358
Query 350 GCGTCCTTTGAGAAAACttttttttCC--------------AGTATCACTCTTGCTGTTC 395
||||||||| |||||||||||| || ||||||||||||| |||||
Sbjct 359 GCGTCCTTTAAGAAAACTTTTTCCACCTAGAGAAGAAGAAGAGTATCACTCTTGTTGTTC 418
Query 396 AAGtttct-tcttt--taaaaaatttatctttattctttgtcttctttcctttttgcttt 452
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AAGTTTCTCTCTTTAATAAAAAATCCATCTTTATTCTTTGTCTTCTTTCCTTTTTGCTTT 478
Query 453 cCCCAATCTCTATGTTATAAACACACACAGAGAAAC--AGTCACAGTCTTGAGTTaaaaa 510
||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||||
Sbjct 479 CCCTAATCTCTATGTTATAAACACACAGAGAGAAACAAAGTCACAGTCTCGAG-TCAAAA 537
Query 511 aaaaacagaga-gaaa-aaaaaTGGAAGCGGAGAAGAAAATGGTTTTACCGAGAATTAAA 568
| | | | | | |||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 538 ACAGAGA-ATACGAAAGAAAAATGGAAGCGGAGAAGAAAATGGTTCTACCGAGAATCAAA 596
Query 569 TTCACAGAGCACAAAACCAACACGACGACAATCGTACCGGATTTAACCAACAATCACCAA 628
|||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||
Sbjct 597 TTCACAGAGCACAAAACCAACACGACAACAATCGTATCGGAGTTAACCAACACTCACCAA 656
Query 629 ACCAGGGTTCTTCGTATTTCAGTCACTGACCCAGACGCTACTGATTCCTCAAGCGACGAC 688
|||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 657 ACCAGGATTCTTCGTATCTCAGTCACTGACCCAGACGCTACTGATTCCTCCAGTGACGAC 716
Query 689 GAAGAAGAAGAACATCAACGGTTCGTCTCTAAACGCCGTCGTATCAAAAAGTTCGTCAAC 748
|||||||||||||||||||| || |||||||||||||||||| | || ||||| ||||||
Sbjct 717 GAAGAAGAAGAACATCAACGCTTTGTCTCTAAACGCCGTCGTGTTAAGAAGTTTGTCAAC 776
Query 749 GAGGTCGCTCTCGATGCTGGTG--G-TGTTGCTGGTAGTTGTAGTCAAATGGAATCAAAG 805
|| ||| ||||||| | |||| | |||| ||||||||||| |||||||||| || |||
Sbjct 777 GAAGTCTATCTCGATTCCGGTGCTGTTGTTACTGGTAGTTGTGGTCAAATGGAGTCGAAG 836
Query 806 AAGAGACGGAAGAGAGCTGTGAAATCGGAGTCTGCTGTTTCTCCGGTTGTTTCAGcgacg 865
||||||| |||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 837 AAGAGACAAAAGAGAGCGGTTAAATCGGAGTCTACTGTTTCTCCGGTTGTTTCAGCGACG 896
Query 866 acgacgacgacgacgacgGAGAAGAAGTTCCGAGGAGTGAGACAGCGTCCATGGGGAAAA 925
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACGACTACGACG-GGA--GAGAAGAAGTTCCGAGGAGTGAGACAGCGTCCATGGGGAAAA 953
Query 926 TGGGCGGCGGAGATAAGAGATCCGTTGAAACGTGTACGGCTCTGGTTAGGTACTTACAAC 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGGGCGGCGGAGATAAGAGATCCGTTGAAACGTGTACGGCTCTGGTTAGGTACTTACAAC 1013
Query 986 ACCGCGGAAGAAGCTGCCATGGTTTACGATAACGCTGCGATTCAGCTTCGTGGTCCAGAC 1045
|| |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1014 ACGGCGGAAGAAGCTGCTATGGTTTACGATAACGCCGCTATTCAGCTTCGTGGTCCCGAC 1073
Query 1046 GCTCTCACTAATTTCTCCGTTACTCCGACGAC-G--ACTGAGAAAAAACCCCCACCACCT 1102
||||| ||||||||||| || |||||||| || | || ||||| ||| ||||||||||
Sbjct 1074 GCTCTGACTAATTTCTCAGTCACTCCGACAACAGCGACGGAGAAGAAAGCCCCACCACCG 1133
Query 1103 TCTCCGGTGAAGAAGAAGAA-AACGAG---CAA-A---GTTAAAAAATCTGTTACTGCTT 1154
|||||||||||||||||||| || || ||| | | |||||||| ||||||||||
Sbjct 1134 TCTCCGGTGAAGAAGAAGAAGAA-GAAAAACAACAAAAGC-AAAAAATCCGTTACTGCTT 1191
Query 1155 CTTCCTCCATCAGCAGAAGCAGTAGCAACGACTGTCTCTGCTCTCCGGTGTCTGTACTCC 1214
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1192 CTTCCTCCATCAGCAGAAGCAGCAGCAACGATTGTCTCTGCTCTCCGGTGTCTGTTCTCC 1251
Query 1215 GATCTCCTTTCGCCGTCGACGAGTTCTCCGGCATTTCTTCACCACCAC-CAGCGGCTGTT 1273
|||||||||||||||||||||| |||||||||||||||||| ||||| | ||||| |||
Sbjct 1252 GATCTCCTTTCGCCGTCGACGAATTCTCCGGCATTTCTTCATCACCAGTC-GCGGCCGTT 1310
Query 1274 GTAGTCAAGGAAGAGCCATCGATGACGACTGTCTCAGAGACTTTCTCAGATTTCTCGGCG 1333
|||||||||||||||||||| ||||| || || || || |||||||| ||||||||||||
Sbjct 1311 GTAGTCAAGGAAGAGCCATCCATGACAACGGTATCTGAAACTTTCTCTGATTTCTCGGCG 1370
Query 1334 CCGTTGTTCTCAGATGATGACGTGTTCGATTTCCGGAGCTCAGTGGTTCCCGACTACCTC 1393
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1371 CCCTTGTTCTCAGATGATGACGTGTTCGATTTCCGGAGCTCAGTGGTTCCCGACTATCTC 1430
Query 1394 GGCGGCGATTTATTTGGGGAAGATCTATTCACGGCGGATATGTGTACGGATATGAACTTC 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GGCGGCGATTTATTTGGGGAAGATCTATTCACGGCGGATATGTGTACGGATATGAACTTC 1490
Query 1454 GGATTCGATTTCGGATCCGGATTATCCAGCTGGCACTTGGAAGACCATTTTCAAGATATC 1513
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1491 GGATTCGATTTCGGATCCGGATTATCCAGCTGGCACATGGAGGACCATTTTCAAGATATC 1550
Query 1514 GGGGATCTATTCGGGTCGGATCCTCTTTTAGCTGTTTAATAATATTTTAAATAAATAAAT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GGGGATCTATTCGGGTCGGATCCTCTTTTAGCTGTTTAATAATATTTTAAATAAATAAAT 1610
Query 1574 AGTTTTACCGGCCGTTACTAAACGGAACCGGAGAAAGTTTTGTATACCGGTGAAATATAA 1633
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1611 AGTTATACCGGCCGTTACTAAACGGAACCGGAGAAAGTTTTGTATACCGGTGACATAAAA 1670
Query 1634 TCTCGGTTATGTTC 1647
||||||||||||||
Sbjct 1671 TCTCGGTTATGTTC 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81877088895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5