BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492495
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23720.1 | Symbols: | Protein of unknown function (DUF1191)... 1500 0.0
> AT4G23720.1 | Symbols: | Protein of unknown function (DUF1191)
| chr4:12358675-12359857 FORWARD LENGTH=1183
Length=1183
Score = 1500 bits (812), Expect = 0.0
Identities = 1011/1105 (91%), Gaps = 21/1105 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTAACACGAAAGAGAAACATGAACTCAAAGTCTCTCATTTGCTGTGTTGTGTTC 60
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 9 AAAAAAAAAACACTAAAGAGAAACATGAACTCAAAGTCTCTCACTTGCTGTGTTGTGTTC 68
Query 61 TTACTACACACCATTTTGTTTTCTTCTACATCACAATCCTCTCTTATCCACTTCAACTCC 120
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 69 TTACTACATACCAGTTTGTTTTCTTCTACATTACAATCCTCTCTTATCCACTTGAACTCC 128
Query 121 ACAACGTCAATCCTTAATGTCACTTTACCACATTCCTTGTCTCAATCCCTT-GAGGATTT 179
||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 129 ACAACATCAATCCTTAATGTCACTTTACCACATTCCTTGTCTCAAT-CCTTAGAGAATTT 187
Query 180 CGCCCTCAAGACGTTAACCACTCAACATCATACCGGTGCACTATACCGGGCCATCTTACC 239
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 188 CGCCCTCAAGACGTTAACCACTCAACATCATACCGGTGCACTATACCGAGCTATCTTACC 247
Query 240 GGAAAATCTTTCCGGCATCGAAGTGTCTGTCGTCCGTCTCACCGGGAAGAGCCTTTGGAA 299
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 248 GGAAAATCTCTCCGGCATCGAAGTCTCTGTCGTCCGTCTCACCGGGAAGAGTCTTTGGAA 307
Query 300 CTCCGGGGCCAAGTTCAGCAGCGTGCTTATTCCGGAAAGGTCAGTTTCGGTTCCTCCTGC 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTCCGGGGCCAAGTTCAGCAACGTGCTTATTCCGGAAAGGTCAGTTTCGGTTCCTCCTGC 367
Query 360 CAGGAGAGTCGCTATTGTGTACCAAAATCTAGGGAATTGGTCTAACCATTGGTATACCGT 419
|||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TAGGAGAGTCGTTATAGTATACCAAAATCTAGGGAATTGGTCTAACCATTGGTATACCGT 427
Query 420 ACCCGGTTACCGATTAATCACTTCTGTCTTAGGGTTTAAGGTATTGGACGTGTCAGATCA 479
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 428 ACCTGGTTACCGGTTAATCACTTCTGTCTTAGGGTTTAAGGTATTGGATGTGTCGGATCA 487
Query 480 AGACAATGTCAAAGAGATTAGTCTAAGGATGAAAAATCCTGTAGAGGTTTCGTTTATGGA 539
||||||||| ||||| || | ||||| |||||| |||||||||||||||||||||| |||
Sbjct 488 AGACAATGTTAAAGAAATAATTCTAAAGATGAAGAATCCTGTAGAGGTTTCGTTTAGGGA 547
Query 540 TCTACCTAAAGAGACAGATGAAGAAATGCTGTCTAGGGTAAGATGCGTGAGTTTCAAGGC 599
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCTACCTAAAGAGAGGGATGAGGAAATGCTGTCTAGGGTAAGATGCGTGAGTTTCAAGGC 607
Query 600 ACAGACGGAAGATGAGAAAGTAATTCATATAAGCCGAATGGTTCTTCCGGGCGTGTGTTA 659
|||||| |||||||| ||| | ||||||||||||||||||| | ||||| ||||||||
Sbjct 608 ACAGACCAAAGATGAGGAAGCGACTCATATAAGCCGAATGGTTATCCCGGGTGTGTGTTA 667
Query 660 CGGTTCTAGCCATGGGGATTATTCGGTGGTCGAGCCCTTGGAGAATGATAAGAAGAATGT 719
||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 668 TGGTTCGAGCCATGGGGATTATTCGGTGATCGAGCCTTTGGAGAACGATAAGAAGAATGT 727
Query 720 CGAGTCGTGGTGGACCTGGTGGTGGTTGTGGATCGTGGGATTTAT-TTCAGGATTTGGCG 778
|||||||||| |||||||||||||||||||||||||||||| | || |||||| ||
Sbjct 728 TGAGTCGTGGTCCACCTGGTGGTGGTTGTGGATCGTGGGATTTGTATT-AGGATTCGGTT 786
Query 779 TGTTAGGGTTTCTCTGGTTTTTGTGGACAATGGGGATAAGGGTTTCAAGAGCGAAGAAGA 838
| ||||||||| | || | || ||||||||||||||||||||||||||||||||||
Sbjct 787 TATTAGGGTTT-T-TG-T----GT--ACAATGGGGATAAGGGTTTCAAGAGCGAAGAAGA 837
Query 839 TTCAAGTGATGATGGAGAGAGACGCTGATGATGGTGAAATGTTTGAGAGCAGATGGATTG 898
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 838 TTCAAGTGATGATGGAGAGAGACGCTAATGATGGTGAAGTGTTTGAGAGCAGATGGTTTG 897
Query 899 GTGGAAGTAAAATGCCTTCTGCAGCTGTAACCAGAACCTTACCAGAGC-CAGAATCAGGA 957
|||||||||||||||| |||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 898 GTGGAAGTAAAATGCCATCTGCAGCTGTAACCAGAACTTTACCAGAGCTC-GAATCCGGG 956
Query 958 TTCGAAAGGGTCTTTTAGATAATTGATTGG-TCCTTACTTCATCTAAAA-TTGAAAATTA 1015
||||||||||||| |||||||| || |||| || |||||| | | ||| ||||||||||
Sbjct 957 TTCGAAAGGGTCTCTTAGATAAATGGTTGGGTC-TTACTTGGT-TCAAACTTGAAAATTA 1014
Query 1016 CTCCTGATCAAAATATGTAGTCATATTACTTAATATAGTATAGAAAAAACTTTTACGTTA 1075
||||| || ||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1015 CTCCTTATAAAAATATGTAGTCATC--ACTTAATATAGTATAGAAAAAGCTTTTACTTTA 1072
Query 1076 GTCCTAGCTGGGAAGCTTTGAATCC 1100
|||||||||||||||||||||||||
Sbjct 1073 GTCCTAGCTGGGAAGCTTTGAATCC 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5