BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492496

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23710.1 | Symbols: VHA-G2, VAG2, VATG2 | vacuolar ATP synth...   640    0.0  


> AT4G23710.1 | Symbols: VHA-G2, VAG2, VATG2 | vacuolar ATP synthase 
subunit G2 | chr4:12350089-12351624 FORWARD LENGTH=697
Length=697

 Score =  640 bits (346),  Expect = 0.0
 Identities = 432/472 (92%), Gaps = 11/472 (2%)
 Strand=Plus/Plus

Query  1    TCTCCGGCCATCTCTGTCTCTCTGTCCACTTTCGTGCCAAAGAAGA-TTTTTGAGGATTT  59
            ||||||| | |||||||||||||||||| ||||||| | ||||||| ||||| ||| | |
Sbjct  36   TCTCCGGTCTTCTCTGTCTCTCTGTCCATTTTCGTGGCGAAGAAGATTTTTTAAGG-TCT  94

Query  60   TTTCAAGAAAATATGGAATCCACAGGGATCCAGCAACTGCTTGCCGCTGAACACGAAGCT  119
            |||||||||| |||||||||  |||||||||||||||||||||| |||||||  ||||||
Sbjct  95   TTTCAAGAAATTATGGAATCTGCAGGGATCCAGCAACTGCTTGCTGCTGAACGTGAAGCT  154

Query  120  CAGCAAATTGTCAATGCCGCTAGGACCGCAAAAATGACCAGACTGAAGCAAGCCAAGGAA  179
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  155  CAGCAAATTGTCAATGCCGCTAGGACCGCAAAAATGACTAGACTGAAGCAAGCCAAGGAA  214

Query  180  GAAGCTGAATCAGAGGTTTCTGAGCACAAAACCAGTACAGAGCAGGGTTTCCAGAGGAAA  239
            ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  215  GAAGCTGAAACAGAGGTTGCTGAGCACAAAACCAGTACAGAGCAGGGGTTCCAGAGGAAA  274

Query  240  CTCGAAGCGACAAGTGGAGATTCAGGGGCAAACGTTAAGAGGCTTGAACAAGAGACTAAC  299
            |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | 
Sbjct  275  CTCGAAGCGACAAGTGGAGATTCAGGTGCAAACGTGAAGAGGCTTGAGCAAGAGACTGAT  334

Query  300  GCCAAAATCGAGCAATTGAAGAACGAAGCTTCGAGAATTTCCAAAGATGTTGTGGATATG  359
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  335  GCCAAAATCGAGCAATTGAAGAACGAAGCTACGAGAATTTCCAAAGATGTTGTGGATATG  394

Query  360  CTTCTGAAAAATGTGACCACAGTGAACAACTGAGTATA-T--CACAAGGAAACCATCAAC  416
            |||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct  395  CTTCTGAAAAATGTGACCACAGTGAACAACTGAGTATAATATCTCAAGGAAACCATCAAC  454

Query  417  TGTTAAACGGTGTGACATGttttttttGAGTGGATTCGTTCATTCCTTTCTT  468
            ||| ||| ||||||| || |||      ||||||| ||||||||||||||||
Sbjct  455  TGTAAAATGGTGTGATAT-TTTC-----AGTGGATACGTTCATTCCTTTCTT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5