BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492497
Length=2663
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23700.1 | Symbols: ATCHX17, CHX17 | cation/H+ exchanger 17 ... 3928 0.0
> AT4G23700.1 | Symbols: ATCHX17, CHX17 | cation/H+ exchanger 17
| chr4:12342428-12346043 REVERSE LENGTH=2732
Length=2732
Score = 3928 bits (2127), Expect = 0.0
Identities = 2476/2646 (94%), Gaps = 18/2646 (1%)
Strand=Plus/Plus
Query 21 aaaTCAATCGAGTTAGATCGGAGAATCATCTCAGTCCCGATATAATCTGCGTTTTTAGAT 80
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 85 AAATCAATCGATTTAGATCGGATAATCATCTCCGTCCCGATATAATCTGCGTTTTCAGAT 144
Query 81 ATTTATCCATCTTTAAAAGGCATGGGAACAAACGGGACAACATGTCCAGGACCAATGAAA 140
||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 145 ATTAATCCATCTTT-AAA-GCATGGGAACAAACGGTACAACATGTCCAGGACCAATGAAA 202
Query 141 GCAACCTCTAATGGAGTGTTCCAAGGAGAGAATCCTCTGGATCACGCGTTGCCTCTTCTG 200
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 203 GCAACCTCTAATGGAGTCTTTCAAGGAGAGAATCCTCTGGAACACGCGTTGCCTCTTCTC 262
Query 201 ATACTTCAGATCTGTATTGTTCTTCTGCTCACTCGTCTTCTTGCTTTTCTCCTTCGTCCT 260
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 263 ATACTCCAGATCTGTATCGTTCTTCTTCTCACTCGTCTTCTTGCTTTTCTCCTCCGTCCT 322
Query 261 CTCCGGCAGCCACGTGTCATCGCCGAGATTGTCGGTGGAATATTACTTGGACCATCAGCA 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CTCCGGCAGCCACGTGTCATCGCCGAGATTGTCGGTGGAATATTACTTGGACCATCAGCA 382
Query 321 CTTGGGAAAAGCTCAAAGTTTATCAACACAGTTTTCCCACCAAAGAGTCTAACGGTTTTA 380
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CTTGGGAAAAGCACTAAGTTTATCAACACAGTTTTCCCACCAAAGAGTCTAACGGTTTTA 442
Query 381 GACACACTTGCAAACTTAGGACTCATCTTCTTCCTATTCCTCGTTGGTCTCGAGCTCGAT 440
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 443 GACACACTTGCAAACTTAGGACTCATCTTCTTCCTCTTCCTCGTTGGTCTCGAGCTCGAT 502
Query 441 CCCAAATCCCTCAAGCGAACCGGAAAAAGAGCTCTCTCGATTGCTCTCGCCGGAATCACT 500
|||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 503 CCCAAATCTCTTAAGCGAACCGGAAAGAGAGCTCTCTCTATCGCTCTCGCCGGAATCACT 562
Query 501 CTCCCTTTTATATTAGGCATTGGAACATCTTTTGCTCTCCGCAGTTCCATAGCTGATGGA 560
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 563 CTTCCTTTCGTATTAGGCATTGGAACTTCTTTTGCTCTCCGCAGTTCCATAGCTGATGGA 622
Query 561 GCCAGCAAAGCTCCTTTCCTTGTCTTCATGGGTGTTGCTCTCTCCATCACCGCTTTTCCC 620
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 623 GCCAGCAAAGCTCCTTTCCTTGTCTTCATGGGTGTTGCTCTCTCCATCACAGCGTTTCCC 682
Query 621 GTCTTGGCTCGAATACTCGCTGAGATCAAGCTTCTAACCACTGATATCGGAAAGATTGCT 680
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 683 GTCTTGGCCCGAATACTCGCTGAGATTAAGCTTCTAACCACTGATATCGGAAAGATTGCT 742
Query 681 TTGTCGGCTGCTGCAGTCAATGACGTGGCTGCTTGGATTCTCCTTGCTCTAGCGGTGGCT 740
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 743 TTGTCCGCTGCTGCGGTCAATGACGTGGCTGCTTGGATTCTCCTTGCTCTCGCGGTGGCT 802
Query 741 CTCTCTGGAGAGGGGAGCTCTCCGCTAACATCTCTCTGGGTGTTTCTCTCGGGTTGCGGT 800
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 803 CTTTCTGGAGAGGGGAGCTCTCCGCTTACTTCTCTTTGGGTGTTTCTCTCGGGTTGCGGT 862
Query 801 TTCGTCCTGTTCTGTATCTTTGTTGTGCAACCGGGGATTAAGTTGATTGCTAAACGTTGT 860
|| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 863 TTTGTCTTGTTCTGTATCTTTGTTGTGCAACCAGGGATTAAGTTGATTGCTAAACGTTGC 922
Query 861 CCTGAAGGAGAACCAATAAATGAACTTTACGTGTGTTGCACGTTAGGTATTGTTCTTGCA 920
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CCTGAAGGAGAACCGGTAAATGAACTTTACGTGTGTTGCACGTTAGGTATTGTTCTTGCA 982
Query 921 GCTAGCTTCGTCACGGACTTGATTGGGATCCACGCGCTATTCGGTGCGTTTGTGATTGGG 980
|||||||||||||| ||||| |||||||| || ||||| || ||||| |||||||| |||
Sbjct 983 GCTAGCTTCGTCACAGACTTTATTGGGATTCATGCGCTGTTTGGTGCTTTTGTGATCGGG 1042
Query 981 GTTATTTTCCCTAAAGAAGGCAATTTCGCGAATGCTCTGGTTGAGAAAGTTGAGGATCTC 1040
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1043 GTTATTTTCCCTAAAGAAGGCAATTTCGCGAATGCTTTAGTTGAGAAAGTTGAGGATCTC 1102
Query 1041 GTGTCAGGTCTTTTCTTGCCGCTCTACTTCGTCTCAAGTGGTTTAAAAACGGATGTGGCG 1100
||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 1103 GTGTCAGGTCTTTTCTTGCCGCTCTACTTCGTCTCAAGTGGTTTAAAGACCAATGTTGCG 1162
Query 1101 ACGATCCAAGGAGCTCAGTCTTGGGGACTCTTGGTTTTGGTTATATTTAATGCTTGTTTC 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 ACGATCCAAGGAGCTCAGTCTTGGGGACTCTTGGTTTTGGTTATATTTAATGCTTGTTTC 1222
Query 1161 GGTAAAATCGTCGGTACAGTCCTAGTTTCTCTTTACTGCAAAGTTCCACTTGACCAGTCT 1220
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1223 GGTAAAATCATCGGTACAGTCCTAGTTTCCCTTTACTGCAAAGTTCCGCTTGACCAGTCT 1282
Query 1221 TTAGCGCTTGGTTTCTTGATGAACACGAAAGGCCTTGTTGAGCTCATCGTCCTCAACATC 1280
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1283 TTAGCGCTTGGTTTCTTGATGAACACGAAAGGTCTTGTTGAGCTCATCGTCCTCAACATT 1342
Query 1281 GGTAAAGACAGAGGGGTAAGTCTGAACGATCAAGTTTTCGCTATAATGGTTCTAATGGCG 1340
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct 1343 GGTAAAGACAGAGGGGT---TCTGAATGATCAAATTTTCGCTATAATGGTTCTAATGGCG 1399
Query 1341 ATTTTCACCACGTTCATGACGACTCCTCTAGTTCTAGCGGTGTACAAACCGGGTAAATCT 1400
|| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1400 ATATTCACCACATTCATGACGACTCCTCTAGTTCTGGCAGTGTACAAACCGGGTAAATCC 1459
Query 1401 TTAACCAAAGGTGATTACAAGAACCGAACGGTGGAGGAGACGAACCGGTCAAACAAACCG 1460
|||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1460 TTAACCAAAGCTGATTATAAGAACCGAACGGTGGAGGAGACGAACCGTTCAAACAAACCG 1519
Query 1461 CTCTGTCTCATGTTCTGTTTCCAGAGCATAATGAACATCCCCACGATCGTCAACCTCATA 1520
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CTCTGCCTCATGTTCTGTTTCCAGAGCATAATGAACATCCCCACGATCGTCAACCTCATA 1579
Query 1521 GAAGCATCCCGAGGCATAAACCGTAAAGAAAATCTATCAGTCTACGCGATGCATCTTATG 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 GAAGCATCCCGAGGCATAAACCGTAAAGAAAATCTATCAGTCTACGCGATGCATCTTATG 1639
Query 1581 GAGCTTTCGGAGAGATCATCCGCTATACTCATGGCACACAAGGTCCGAAGAAACGGCCTT 1640
|||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| |||
Sbjct 1640 GAGCTTTCAGAGAGATCATCGGCTATACTCATGGCACACAAGGTCAGGAGAAACGGTCTT 1699
Query 1641 CCTTTCTGGAACAAAGACAAAACAGGGAACAATAGTTCTTCTTCCGACATGGTTGTGGTT 1700
|| |||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1700 CCCTTCTGGAACAAAGACAAATCTGAGAACAATAGTTCTTCTTCCGACATGGTTGTGGTC 1759
Query 1701 GCATTTGAAGCTTTCCGGCGACTTAGTCGTGTCTCAGTACGTCCCATGACGGCTATCTCA 1760
||||| || |||||||| |||| || ||||||||||| ||||||||||| || ||||||
Sbjct 1760 GCATTCGAGGCTTTCCGAAGACTCAGCCGTGTCTCAGTGCGTCCCATGACAGCGATCTCA 1819
Query 1761 CCAATGGCGACTATACATGAGGATATTTGCCAAAGCGCCGAACGCaaaaaaaCCGCTATG 1820
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1820 CCGATGGCGACTATACATGAGGATATTTGCCAAAGCGCGGAACGCAAAAAAACCGCTATG 1879
Query 1821 GTGATTCTTCCGTTTCACAAGCACGTTAGGTTGGACAGAACGTGGGAGACGACTCGAAAC 1880
||||||||||||||||| |||||||||||| |||||||||| |||||||||||| | ||
Sbjct 1880 GTGATTCTTCCGTTTCATAAGCACGTTAGGCTGGACAGAACATGGGAGACGACTAGGAAT 1939
Query 1881 GATTACCGTTGGATTAACAAGAAGGTTATGGAGGAATCTCCATGTTCTGTTGCAATTCTG 1940
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1940 GACTACCGTTGGATTAACAAGAAGGTTATGGAGGAATCTCCATGTTCTGTTGCGATTTTG 1999
Query 1941 GTTGATCGTGGGCTTGGTGGTACGACTCGTGTCGCGTCTAGTGATTTCTCGTTGGCTATA 2000
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2000 GTTGATCGTGGACTTGGTGGTACGACACGTGTCGCGTCTAGTGATTTCTCGTTGACTATA 2059
Query 2001 ACGGTTTTGTTTTTTGGAGGGAATGATGATCGCGAGGCGTTAGCGTTTGCGGTGCGAATG 2060
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2060 ACAGTTTTGTTTTTTGGAGGGAATGATGATCGTGAGGCGTTAGCGTTTGCGGTGCGAATG 2119
Query 2061 GCGGAACATCCCGGGATAACCTTAACCGTTGTTCGGTTTATTCCTAGCGAGGAATTTAAA 2120
|| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 2120 GCTGAACATCCCGGGATAAGCTTAACCGTTGTTCGGTTTATCCCTAGCGATGAATTCAAA 2179
Query 2121 CCGGAAAACGTGAAGG-TCGAGATAATCGAAGATCAGGTCGGTTCAGGGGAAACCAGATT 2179
||||||||||||| || ||||||||| |||||||||| || ||||||||| ||| |||||
Sbjct 2180 CCGGAAAACGTGA-GGATCGAGATAACCGAAGATCAGCTCTGTTCAGGGGCAACTAGATT 2238
Query 2180 GATTGATATTGAAGCTATAACCGAACTTAAAGCAAAGATAAAAGAACAAGAAAGCTCTCG 2239
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 2239 GATTGATATTGAAGCTATAACCGAACTTAAAGCAAAGATTAAAGAAAAAGAAAGTTCTCG 2298
Query 2240 TTCTAATTCGGATTCGGAATCTC-TAATCGTTTACGAAGAGAAAATCGTGCAATGTTACG 2298
||||||||||||||| ||||||| || || |||||||||||||||||||| |||||||||
Sbjct 2299 TTCTAATTCGGATTCTGAATCTCATA-TCATTTACGAAGAGAAAATCGTGAAATGTTACG 2357
Query 2299 AGGAAGTTATCGAGGTTATTAATGAGTATTCTAGAAGTAACCTTTTCTTGGTGGGGAAGT 2358
||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2358 AGGAAGTTATCGAAGTTATTAAAGAGTATTCTAAAAGCAACCTTTTCTTGGTGGGGAAGT 2417
Query 2359 CACCGGAAGGTT-TAGTGGCGTCAGGGGTAAACTTGGTAAGAAGTGACACACCGGAGCTT 2417
|||||||||||| | || ||||||||| ||||| | ||||||| ||||| || ||||||
Sbjct 2418 CACCGGAAGGTTCT-GTAGCGTCAGGGATAAAC--G-TAAGAAGCGACACGCCTGAGCTT 2473
Query 2418 GGACCGATCGGGAATTTGTTAACGGCAAGCGAAAGTATTTCGACTGTGGCGTCAGTATTG 2477
||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||
Sbjct 2474 GGACCGATCGGGAATTTGTTAACGGAAAGCGAAAGTGTTTCGACGGTGGCATCAGTGTTG 2533
Query 2478 GTGGTGCAACAGTACACATCAAGCCGTCCGGTCGTTGGAATTTCGAAGAACGTCACGATT 2537
|||||||||||||| | | ||||||||||||||| | |||||||||||||||||||| |
Sbjct 2534 GTGGTGCAACAGTATATAGCAAGCCGTCCGGTCG--G-AATTTCGAAGAACGTCACGACT 2590
Query 2538 GAAGAGTCGCTGGTTGAGGATTCAGAGAGTCCTTAATGAATTTTATCTTTGGGATTCCGA 2597
||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| |
Sbjct 2591 GAAGAGTCGCTGGTTGAGGATTCTGAGAGTCCTTAGTGAATTTTCTATTTGGGATTCCAA 2650
Query 2598 GACTTGCAAAGGTCAAAAGATTGGTTTGTATAATAACGTTTGTTTCATATTGTAAATAAT 2657
|||| | ||||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 2651 GACTCG-AAAGGTCAAAAGATTGGCTTGTATAATAACATGTGTTTCATATTGTAAATAAT 2709
Query 2658 AACTGC 2663
|| |||
Sbjct 2710 AATTGC 2715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132240061748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5