BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492500
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23680.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 983 0.0
AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 652 0.0
> AT4G23680.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:12336186-12337482 REVERSE
LENGTH=751
Length=751
Score = 983 bits (532), Expect = 0.0
Identities = 680/751 (91%), Gaps = 12/751 (2%)
Strand=Plus/Plus
Query 1 TCATcaaccaaaacaaaacatacaaaaacaagtggaagctttaaaacgaaagaaagagag 60
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 2 TCATCAACCAAAACAAAACATA-AAAAACAAGTGGAAGCTTTAAAACGAGAGGGAGAGAG 60
Query 61 caagaaaTGGCGACGTCGGGAACGTACGTGACGGAGGTTCCGTTAAAAGGATCAGCCGAG 120
||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 61 CAA-AAATGGCGACGTCGGGAACGTACGTGACGGAAGTTCCGCTAAAAGGATCGGCCGAG 119
Query 121 AAACATTACAAGAGGTGGAAGAACGAGAACCATGTATTCCCTGACGCCATCGGCCACCAC 180
||| | ||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 120 AAATACTACAAGAGGTGGAAGAACGAGAACCATGTCTTCCCTGATGCTATCGGCCACCAC 179
Query 181 ATCCAAGATGTCATTGTTCACGAAGGCGAACATGACTCTCACGGCTCTATCAGGAGTTGG 240
|||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 ATCCAAAATGTTACCGTTCACGAAGGCGAACATGACTCTCACGGGTCTATCAGGAGTTGG 239
Query 241 AACTACACTTGGGATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGATGATGAG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 AACTACACATGGGATGGAAAGGAGGAGGTGTTCAAGGAGAGAAGAGAGATAGACGATGAG 299
Query 301 AATAAAACATTGACATTAAGAGGACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTTT 360
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACCAAAACGTTGACGTTAAGAGGACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTAC 359
Query 361 GATGTCATTTACCAATTTATTCCCAAATCTGAGGATAGCTGCGTCTGCAAACTCACTTTA 420
|| ||| | |||||||| ||||||||||||||||||| |||| || ||||| ||||||||
Sbjct 360 GACGTCGTCTACCAATTCATTCCCAAATCTGAGGATACCTGCATCGGCAAAATCACTTTA 419
Query 421 ATATGGGAGAAGCGCAACGATGAGTCCCCCGAACCAAGCGGCTACATGAAATTCGTCAAG 480
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 420 ATATGGGAGAAGCGCAACGATGATTCCCCAGAACCAAGCGGGTACATGAAATTCGTCAAG 479
Query 481 AGCTTGGTTGCTGACATGGAAGAAC-ACGtcatcaaaacttaatcatcattcccacggtc 539
||||||||||||||||||| | ||| |||| | ||||||||||||||||||||||| |||
Sbjct 480 AGCTTGGTTGCTGACATGGGA-AACCACGTTAGCAAAACTTAATCATCATTCCCACAGTC 538
Query 540 a-cagtcatcaccatcttcatcatcatcatcacTATCTCGATTTATTACTTAAGGTGTTT 598
| ||| ||| |||| ||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 539 GTC-GTCGTCATCATCATCATCATCATCATCACTATCTCGATTTATAAGTTATGATGTTT 597
Query 599 TTCAGTATAATAAATGGGGTCTTGTGGAATTTCATCA-TTTCTATGTGTTA-CCGTTTGG 656
| |||||||||||||||||||||||||| | | | | ||||||||||| | ||||||||
Sbjct 598 T-CAGTATAATAAATGGGGTCTTGTGGA-T--CGTTAATTTCTATGTGTAAACCGTTTGG 653
Query 657 TTATGTAAGATGCTTTGATATATTGTTATGCTCATGATCATATATCAGGTTCGATATAGT 716
|| |||| ||||||| |||||||||||||| |||||||||||| || ||||||||||| |
Sbjct 654 TTCTGTATGATGCTTCGATATATTGTTATGTTCATGATCATATGTCGGGTTCGATATAAT 713
Query 717 GATTCTTAAGAATAATTTACTACACGTTTCA 747
||||||||||| ||||||||||||| |||||
Sbjct 714 GATTCTTAAGATTAATTTACTACACATTTCA 744
> AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:12332560-12333804 REVERSE
LENGTH=890
Length=890
Score = 652 bits (353), Expect = 0.0
Identities = 596/708 (84%), Gaps = 37/708 (5%)
Strand=Plus/Plus
Query 25 aaaacaagtggaagctttaaaacgaaagaaagagagcaagaaaTGGCGACGTCGGGAACG 84
||||||||| ||| |||||||||| ||| |||||| ||||||||||||| |||||||||
Sbjct 109 AAAACAAGTAGAAACTTTAAAACG--AGAGAGAGAGAAAGAAATGGCGACATCGGGAACG 166
Query 85 TACGTGACGGAGGTTCCGTTAAAAGGATCAGCCGAGAAACATTACAAGAGGTGGAAGAAC 144
|||||||||||||||||||| |||||||| || |||||||| |||||||| ||||||| |
Sbjct 167 TACGTGACGGAGGTTCCGTTGAAAGGATCGGCGGAGAAACACTACAAGAGCTGGAAGAGC 226
Query 145 GAGAACCATGTATTCCCTGACGCCATCGGCCACCACATCCAAGATGTCATTGTTCACGAA 204
||||||||||| ||| |||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 227 GAGAACCATGTCTTCGCTGACGCCATTGGCCACCACATCCAAAATGTCGTTGTTCACGAA 286
Query 205 GGCGAACATGACTCTCACGGCTCTATCAGGAGTTGGAACTACACTTGGGATGGAAAGGAG 264
|||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||| ||
Sbjct 287 GGCGAACATGACTCTCACGGGTCTATCAGGAGTTGGGACTACACATATGATGGAAAGAAG 346
Query 265 GAGGTGTTCAAGGAG-AGAAGAGAGATAGATGATGAGAATAAAACATTGAC-ATTAAGAG 322
||| ||||||| ||| || |||||||||||||||||||||||||||||||| | |||||
Sbjct 347 GAGATGTTCAAAGAGAAG-AGAGAGATAGATGATGAGAATAAAACATTGACGA-AAAGAG 404
Query 323 GACTTGAGGGTCACGTGATGGAGCAGCTCAAAGTGTTTGATGTCATTTACCAATTTATTC 382
|||| || ||||||||||||||||| |||||||| |||||| |||| ||| |||||||||
Sbjct 405 GACTGGATGGTCACGTGATGGAGCATCTCAAAGTATTTGATATCATCTACGAATTTATTC 464
Query 383 CCAAATCTGAGGATAGCTGCGTCTGCAAACTCACTTTAATATGGGAGAAGCGCAACGATG 442
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 465 CCAAATCTGAGGATAGCTGCGTCTGCAAAATCACTATGATATGGGAGAAGCGCAACGATG 524
Query 443 AGTCCCCCGAACCAAGCGGCTACATGAAATTCGTCAAG-AGCTTGGTTGCTGACATGGAA 501
| | ||||||||||||||||||||||||||||||||| | | ||||| |||||| |||
Sbjct 525 ACTTTCCCGAACCAAGCGGCTACATGAAATTCGTCAAGCAAAT-GGTTGTTGACATTGAA 583
Query 502 GAACACGtcatcaaaacttaatcatcattcccacggtcacagtcatcaccatcttc-atc 560
| ||||||| |||| ||||| || || || | |||| |||||||| |||| | |||
Sbjct 584 GGCCACGTCAACAAAGCTTAACCA-CAA-CC-A---TCACCGTCATCACTATCT-CGATC 636
Query 561 -atcatcatcacTATC-TCGATTTATTACTTAAGGTGTTTTTCAGTATAATAAATGGGGT 618
|| || | | ||| | | | | || || | | | || ||||||||| |||||
Sbjct 637 GAT-ATTGT-ATTATTATGG-TGTCTT--TTC-GATAAT---CAATATAATAAAGGGGGT 687
Query 619 CTTGTGGAATTTCATCATTTCTATGTGTTACCGTTTGGTTATGTAAGATGCTTTGATATA 678
|||||||| |||| | ||| || ||| || |||||||| || || ||||| ||||||
Sbjct 688 CTTGTGGAGTTTC-T-ATT-CTCTGTA--ACTGTTTGGTTTTGGAATATGCTGTGATATG 742
Query 679 TTGTTATGCTCATGATCATATATCAGGTT-CGATATAGTGATTCTTAA 725
||||||||||||| |||||||| |||| ||||||| ||| | ||||
Sbjct 743 TTGTTATGCTCAT---CATATATC-GGTTTCGATATAATGAGTATTAA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5