BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492502
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 | chr4:12... 1447 0.0
> AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 | chr4:12327694-12331679
REVERSE LENGTH=1743
Length=1743
Score = 1447 bits (783), Expect = 0.0
Identities = 898/953 (94%), Gaps = 10/953 (1%)
Strand=Plus/Plus
Query 138 GTTTCTTTCAGGCAACAATTTCTCTCAAAGATGGCGTTTTTTGGGCTGTCCCGTGTTTCA 197
||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 32 GTTGCTCTCTGGCAACAATTTCTCTCAAAGATGGCGTTTTTTGGGCTCTCCCGTGTTTCA 91
Query 198 AGACGGTTGTTGAAATCTTCCGTCTCCGTAACTCCATCTTCTTCCTTTGCTGTTTTGCAA 257
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 92 AGACGGTTGTTGAAATCTTCCGTCTCCGTAACTCCATCTTCTTCCTCTGCTCTTTTGCAA 151
Query 258 TCACAACATAAATCCTTGTCCAATCCTGTTACTACCCATTACACAAATCCTTTTACTAAG 317
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 152 TCACAACATAAATCCTTGTCCAATCCTGTGACTACCCATTACACAAATCCTTTCACTAAG 211
Query 318 TATTATCCTTTATGGAATGATAACCACCAAGTATGGAGTAAAGGGAAG-GAATTGCATCA 376
| |||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 212 TGTTATCCTTCATGGAATGATAATTACCAAGTATGGAGTAAA-GGAAGAGAATTGCATCA 270
Query 377 GGAGAAGTTTCTTGGTGTTGGCTGGAATTACAGATTAGTTGGTGGAATGTCGTCGTCTTC 436
|||||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 271 GGAGAAGTTTTTTGGTGTTGGTTGGAATTACAGATTAATTTGTGGAATGTCGTCGTCTTC 330
Query 437 TTCGGTTTTGGAGGGAAAGCCTAAGAAAGATGACAAGGAGATGAGTGA---TG--G-TGT 490
||||||||||||||||||||| ||||||||||| ||||||| |||||| || | |||
Sbjct 331 TTCGGTTTTGGAGGGAAAGCCGAAGAAAGATGATAAGGAGAAGAGTGATGGTGTTGTTGT 390
Query 491 TAAGGAAGCTTCTTGGATTGATTTGTATTTGCCTGAAGAAGTTAGAGGTTATGCTAAGCT 550
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 391 TAAGGAAGCTTCTTGGATAGATTTGTATTTACCAGAAGAAGTTAGAGGTTATGCTAAGCT 450
Query 551 TGCTCGATTGGATAAACCCATTGGCACTTGGTTGCTTGCTTGGCCTTGTATGTGGTCGAT 610
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 451 TGCTCGATTGGATAAACCCATTGGAACTTGGTTGCTTGCGTGGCCTTGTATGTGGTCGAT 510
Query 611 TGCGTTGGCTGCTGATCCTGGAAGCCTTCCAAGTTTTAAATATATGGCGTTATTCGGTTG 670
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 511 TGCGTTGGCTGCTGATCCTGGAAGCCTTCCAAGTTTTAAATATATGGCTTTATTTGGTTG 570
Query 671 TGGAGCACTACTTCTTAGAGGTGCCGGCTGTACAATTAATGATCTGCTTGATCAGGACAT 730
|||||| |||||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct 571 CGGAGCATTACTTCTTAGAGGTGCTGGTTGTACTATAAATGATCTGCTTGATCAGGACAT 630
Query 731 AGATCCAAAGGTTGATCGTACAAGACTAAGACCTATCGCCAGTGGTCTTTTGACACCATT 790
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 631 AGATACAAAGGTTGATCGTACAAAACTAAGACCTATCGCCAGTGGTCTTTTGACACCATT 690
Query 791 TCAAGGAATTGGATTTCTTGGGCTGCAGTTGCTTTTAGGCTTAGGGATTCTTCTCCAACT 850
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCAAGGGATTGGATTTCTCGGGCTGCAGTTGCTTTTAGGCTTAGGGATTCTTCTCCAACT 750
Query 851 TAACAATTACAGCCGTGTTTTAGGGGCTTCATCTTTGTTACTTGTCTTCTCCTACCCACT 910
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 751 TAACAATTACAGCCGTGTTTTAGGGGCTTCATCTTTGTTACTTGTCTTTTCCTACCCACT 810
Query 911 TATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTTTAGGTTTGACCATAAACTGGGGAGC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TATGAAGAGGTTTACATTTTGGCCTCAAGCCTTTTTAGGTTTGACCATAAACTGGGGAGC 870
Query 971 ATTGTTAGGATGGACCGCTGTAAAAGGAAGCATAG-ATCCAGCTGTTGTACTCCCTCTTT 1029
||||||||||||||| || || ||||||||||||| | ||| || ||||||||||||| |
Sbjct 871 ATTGTTAGGATGGACTGCAGTTAAAGGAAGCATAGCA-CCATCTATTGTACTCCCTCTCT 929
Query 1030 ATCTCTCAGGAGTCTGCTGGACCCTTGTTTATGATACTATTTATGCGCATCAG 1082
||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 930 ATCTCTCCGGAGTCTGCTGGACCCTTGTTTATGATACTATTTATGCACATCAG 982
Score = 702 bits (380), Expect = 0.0
Identities = 464/502 (92%), Gaps = 15/502 (3%)
Strand=Plus/Plus
Query 1083 GACAAAGAAGATGATGTAAAAGTTGGTGTTAAGTCAACAGCCCTTAGATTCGGTGATAAT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GACAAAGAAGATGATGTAAAAGTTGGTGTTAAGTCAACAGCCCTTAGATTCGGTGATAAT 1108
Query 1143 ACAAAGCTTTGGTTAACTGGATTTGGTACAGCATCCATGGGCTTTCTTGCACTTTCTGGA 1202
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1109 ACAAAGCTTTGGTTAACTGGATTTGGCACAGCATCCATAGGTTTTCTTGCACTTTCTGGA 1168
Query 1203 CTCTGTGCAGATCTCGGGTGGCAATATTACGCATCACTGGCCGCTGCATCAGGACAGCTA 1262
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1169 TTCAGTGCAGATCTCGGGTGGCAATATTACGCATCACTGGCCGCTGCATCAGGACAGTTA 1228
Query 1263 GGATGGCAAATAGGGACAGCTGACTTATCATCTGGTGCTGACTGCAGTAGAAAATTTGTG 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GGATGGCAAATAGGGACAGCTGACTTATCATCTGGTGCTGACTGCAGTAGAAAATTTGTG 1288
Query 1323 TCAAACAAGTGGTTTGGTGCTATCATATTTAGTGGAGTTGTACTTGGAAGAAGTTTGCAA 1382
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1289 TCGAACAAGTGGTTTGGTGCTATTATATTTAGTGGAGTTGTACTTGGAAGAAGTTTTCAA 1348
Query 1383 TAA-GACACTCTCTGT-T-AACGAATGAGGATGAAGCTGTAGAATGATGAACCTATATAT 1439
||| ||| |||||| | | ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1349 TAAAGACTCTCTCTCTGTCAACGAATGAGGATGAAGCTGTAGTGTGAGGAACCTATATAT 1408
Query 1440 GAAGAATTGAAGTAGACTCTAT-AGAGACAGT-TGAAGTGGAACAGAGGACATGGTCTTG 1497
|||||||||||||||||| | | ||| ||| | | ||||| |||||||||||||||||||
Sbjct 1409 GAAGAATTGAAGTAGACTTT-TGAGACACACTGT-AAGTGAAACAGAGGACATGGTCTTG 1466
Query 1498 CTACAAAGTGGGTCTCTTTCAGGACCGAAA-G-----G-AGCCATTGC-AGAGAAGCTGA 1549
|||||||||||||||| ||||||| |||| | | ||||||||| ||| |||||||
Sbjct 1467 CTACAAAGTGGGTCTCCTTCAGGATTGAAATGATCAAGGAGCCATTGCCAGAAAAGCTGA 1526
Query 1550 AACTTTACTCTTTTAGATTAGT 1571
||||| ||||||||||||||||
Sbjct 1527 AACTTAACTCTTTTAGATTAGT 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79618064370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5