BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492503
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23650.1 | Symbols: CDPK6, CPK3 | calcium-dependent protein ... 2510 0.0
> AT4G23650.1 | Symbols: CDPK6, CPK3 | calcium-dependent protein
kinase 6 | chr4:12324758-12327459 REVERSE LENGTH=1843
Length=1843
Score = 2510 bits (1359), Expect = 0.0
Identities = 1570/1666 (94%), Gaps = 38/1666 (2%)
Strand=Plus/Plus
Query 1 TTCTCTCTCGATTGACTTTATTGACTGAGAGAAAAGCTTT-GACAATGGGCCACAGACAC 59
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1 TTCTCTCTCGATTGACTTTATTGACTGAGAGAAA-GCTTTTGACAATGGGCCACAGACAC 59
Query 60 AGCAAGTCTAAATCCTCCGATCCGCCACCGTCTTCCTCCTCGTCTTCCTCCGGC--C--A 115
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 60 AGCAAGTCCAAATCCTCCGATCCGCCACCGTCCTCCTCCTCCTCTTCCTCCGGCAACGTA 119
Query 116 --CCA---TGTCCAACCTGTTGGAGAACGCCGTGGATCGTCAGGCGCCGGAACCGGCGGA 170
||| ||| |||||| ||||||||||| ||||| || || ||||||||| ||||
Sbjct 120 GTCCACCATGTTAAACCTGCCGGAGAACGCCGCGGATCATCCGGTTCCGGAACCGTCGGA 179
Query 171 TCC-C-GT-TC---AAC-G----A-C-C-----AC-A--TCTACTCAGCAGAATGGTCGG 209
|| | | || ||| | | | | || | |||||||||||||||||||||
Sbjct 180 TCGTCAGGCTCCGGAACAGGCGGATCTCGTTCCACCACATCTACTCAGCAGAATGGTCGG 239
Query 210 ATCTTAGGTCGGCCGATGGAG-AACGTTCG-AGGAACCTATGAGTTTGGTCGTGAGCTAG 267
||||||||||||||||||||| || || || || |||||||||||||||||||||||| |
Sbjct 240 ATCTTAGGTCGGCCGATGGAGGAA-GTACGGAG-AACCTATGAGTTTGGTCGTGAGCTTG 297
Query 268 GTCGTGGCCAGTTCGGCGTTACCTATCTTGTTACTCACAAAGAGACCAAGCAACTAT-TC 326
||||||||||||| || || || || || || |||||||||||||| || |||| | ||
Sbjct 298 GTCGTGGCCAGTTTGGTGTCACGTACCTCGTAACTCACAAAGAGACGAAACAAC-AGGTC 356
Query 327 GCTTGCAAGTCAATCCCTACGCGCCGACTTGTTCACAAAGACGACATTGAAGATGTTCGC 386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 GCTTGCAAGTCAATCCCTACGCGCCGCCTTGTTCACAAAGACGACATTGAAGATGTTCGC 416
Query 387 CGTGAAGTCCAGATTATGCACCATCTCAGCGGCCACCGGAACATAGTGGATTTGAAGGGA 446
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 417 CGTGAAGTCCAGATTATGCACCATCTCAGCGGTCACCGGAACATAGTGGACTTGAAGGGA 476
Query 447 GCCTACGAGGACAGACACTCGGTGAATCTCATAATGGAGCTGTGTGAAGGAGGGGAATTG 506
|||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 477 GCCTACGAGGACAGACACTCTGTGAATCTGATAATGGAGTTGTGTGAAGGAGGGGAATTG 536
Query 507 TTCGATAGGATCATAGCTAAAGGTCTTTACTCAGAGAGAGCTGCTGCGGATTTGTGCAGG 566
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 TTCGATAGGATCATTTCTAAAGGTCTTTACTCAGAGAGAGCTGCTGCGGATTTGTGTAGG 596
Query 567 CAGATGGTGATGGTTGTGCATAGTTGTCATTCTATGGGTGTAATGCACCGAGACTTGAAG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAGATGGTGATGGTTGTGCATAGTTGTCATTCTATGGGTGTAATGCACCGAGACTTGAAG 656
Query 627 CCCGAAAACTTTCTCTTTCTTAGTAAAGATGAGAACTCCCCATTGAAAGCTACAGACTTT 686
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 CCCGAAAACTTTCTCTTTCTTAGTAAAGATGAGAACTCACCATTGAAAGCTACAGACTTT 716
Query 687 GGTCTCTCGGTTTTCTTCAAGCCAGGCAATAAGTTTAAGGATCTTGTTGGAAGTGCCTAC 746
|||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 717 GGTCTCTCTGTCTTCTTCAAGCCAGGTGATAAGTTTAAGGATCTTGTTGGAAGTGCATAC 776
Query 747 TATGTTGCCCCGGAAGTTCTAAAACGGAACTATGGACCAGAGGCTGATATCTGGAGTGCT 806
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TATGTTGCCCCAGAAGTTCTAAAACGGAACTATGGACCAGAGGCTGATATCTGGAGTGCT 836
Query 807 GGCGTGATTCTTTACATCCTTCTCAGTGGTGTCCCGCCTTTCTGGGGAGAAAATGAAACG 866
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 837 GGTGTGATTCTATACATCCTTCTCAGTGGTGTTCCGCCTTTCTGGGGAGAAAATGAAACG 896
Query 867 GGGATCTTTGATGCCATTCTTCAAGGGCAGCTTGATTTTTCAGCTGATCCATGGCCAGCA 926
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 GGGATCTTTGATGCCATTCTTCAAGGGCAACTTGATTTTTCAGCTGATCCATGGCCAGCA 956
Query 927 CTATCAAATGGTGCCAAAGATCTTGTGAGGAAAATGTTAAAGTATGACCCTAAAGATCGG 986
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 CTATCAGATGGTGCCAAAGATCTTGTGAGGAAAATGTTAAAATATGACCCTAAAGATCGG 1016
Query 987 CTTTCAGCTGCGGAAGTGCTAAATCATCCGTGGATTAGAGAAGACGGGGAGGCGTCAGAC 1046
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1017 CTTACAGCTGCGGAAGTGCTAAATCATCCGTGGATTAGAGAAGATGGGGAGGCATCAGAC 1076
Query 1047 AAACCGCTTGACAATGCGGTGTTATCCAGGATGAAACAATTCCGGGCGATGAACAAACTa 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAACCGCTTGACAATGCGGTGTTATCCAGGATGAAACAATTCCGGGCGATGAACAAACTA 1136
Query 1107 aaaaaaaTGGCCCTGAAGGTTATCGCTGAGAACCTTTCTGAAGAAGAAATCATTGGTCTT 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAAAAAATGGCCCTGAAGGTTATCGCTGAGAACCTTTCTGAAGAAGAAATCATTGGTCTT 1196
Query 1167 AAAGAGATGTTCAAATCTCTAGACACTGATAACAACGGAATAGTCACCTTGGAGGAATTG 1226
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 AAAGAGATGTTCAAATCTCTAGACACTGATAACAATGGAATAGTCACCTTGGAGGAATTG 1256
Query 1227 AGAACCGGTCTCCCCAAACTTGGTTCGAAGATCTCTGAGGCTGAAATAAGGCAGTTAATG 1286
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1257 AGAACCGGTCTCCCAAAACTTGGTTCAAAGATCTCTGAAGCTGAAATAAGGCAGTTAATG 1316
Query 1287 GAAGCAGCTGATATGGATGGAGATGGATCAATTGATTACTTGGAGTTTATATCAGCCACA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAAGCAGCTGATATGGATGGAGATGGATCAATTGATTACTTGGAGTTTATATCAGCCACA 1376
Query 1347 ATGCATATGAACAGAATCGAACGTGAGGATCACTTGTACACCGCTTTCCAGTTCTTTGAC 1406
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1377 ATGCATATGAACAGAATCGAACGTGAGGATCACTTGTACACCGCATTCCAGTTCTTTGAC 1436
Query 1407 AATGACAACAGCGGCTACATAACAATGGAAGAACTAGAGCTAGCCATGAAGAAATACAAC 1466
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1437 AATGACAACAGCGGCTACATAACAATGGAAGAGCTAGAGCTAGCCATGAAGAAATACAAC 1496
Query 1467 ATGGGTGATGATAAATCCATCAAAGAGATCATTGCTGAAGTAGACACCGATCGTGACGGA 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATGGGTGATGATAAATCCATCAAAGAGATCATTGCTGAAGTAGACACCGATCGTGACGGA 1556
Query 1527 AAAATCAACTACGAAGAATTTGTAGCGATGATGAAGAAGGGAAATCCAGAATTGGTGCCA 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AAAATCAACTACGAAGAATTTGTAGCGATGATGAAGAAGGGAAATCCAGAATTGGTGCCA 1616
Query 1587 AACCGACGCAGAATGTGAGAGATCTTTTGATGTTGTTTGTTTGTTT 1632
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AACCGACGCAGAATGTGAGAGATCTTTTGATGTTGTTTGTTTGTTT 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5