BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492505
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23620.2 | Symbols: | Ribosomal protein L25/Gln-tRNA synthe... 778 0.0
AT4G23610.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 291 1e-77
> AT4G23620.2 | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain | chr4:12314776-12316702 REVERSE
LENGTH=1117
Length=1117
Score = 778 bits (421), Expect = 0.0
Identities = 444/455 (98%), Gaps = 2/455 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCGCTGCTAAAAAGTAAACAATGTTGCTCCGTCGTGCAACAACACTACCCAA 60
|||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 16 TCTCTCTCTCACTGGTAAAAAGCAAACAATGTTGCTCCGTCGTGCAAAAACACTACCCAA 75
Query 61 AACCCTACAAAACCTCCGGTTATTCTCTCCGGCGGCGAACGCAGCTCTATCACTCGATCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 76 AACCCTACAAAACCTCCGGTTATTCTCTCCGGCGGCGAACGCAGCTCTATCCCTAGATCA 135
Query 121 TATCCAAGAAACCCAATTAACTTACCTCCCTGGATTCCCTCGACCCGATCCAAAACACGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TATCCAAGAAACCCAATTAACTTACCTCCCTGGATTCCCTCGACCCGATCCAAAACACGC 195
Query 181 AGAGACGATCTTAGCCGTTCCAAGGTCTGTCTCCGGCAAGAGCATATCGGCGAAAGAGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 196 AGAGACGATCTTAGCCGTTCCAAGGTCTGTCTCCGGCAAGAGCATATCAGCGAAAGAGCG 255
Query 241 TAAAGCGGGTCGGGTTCCTTCGATCATATTCGAACAAGAAGATGGACAACACGGAGGAAA 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 256 TAAAGCGGGTCGGGTTCCTTCGATCATATTCGAACAAGAGGATGGACAACACGGAGGAAA 315
Query 301 CAAGAGACTTATTTCAGTTCAGACGAATCAGATCAGGAAGCTTGTGAATCATTTGGGTTA 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CAAGAGGCTTATTTCAGTTCAGACGAATCAGATCAGGAAGCTTGTGAATCATTTGGGTTA 375
Query 361 CTCTTTTTTCCTCTCTAGGCT-TTTCGATGTTGAGGTTCGAGCTGAGATTGGTTCTGATG 419
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 376 CTCTTTTTTCCTCTCTAGGCTCTTT-GATGTTGAGGTTCGAGCTGAGATTGGTTCTGATG 434
Query 420 AGGTTATTGAGAAAGTCAGAGCCTTGCCTAGAGCG 454
|||||||||||||||||||||||||||||||||||
Sbjct 435 AGGTTATTGAGAAAGTCAGAGCCTTGCCTAGAGCG 469
Score = 706 bits (382), Expect = 0.0
Identities = 512/569 (90%), Gaps = 31/569 (5%)
Strand=Plus/Plus
Query 455 ATTCATTTGCACTCTGGAACCGATGCTCCATTGAATGTGACATTCATAAGAGCGCCTCCA 514
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 509 ATTCATTTGCACTCTGGGACTGATGCTCCACTGAATGTGACATTCATAAGAGCGCCTCCA 568
Query 515 GGTGCTTTATTGAAGGTTGATATCCCTCTTGTGTTCATAGGAGATGATGTTTCTCCTGGA 574
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 569 GGTGCTTTGTTGAAAGTTGATATCCCTCTTGTGTTCATTGGAGATGATGTTTCTCCTGGA 628
Query 575 TTGAAGAAAGGAGCATCTCTGAATACAATAAAAAGAACGGTAAAGTTCCTATGCCCAGCA 634
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 629 TTGAAGAAAGGAGCATCTCTGAATACGATTAAAAGAACAGTAAAGTTCCTATGCCCAGCA 688
Query 635 GAGATTATCCCACCATATATAGAAGTAGATCTCAGCCAATTGGATATCGGGCAAAAGCTA 694
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 689 GAGATTATCCCACCATATATAGAAGTAGATCTAAGCCAATTGGATATCGGACAAAAGCTA 748
Query 695 GTTATGGGAGACCTCAAGGTTCATCCGGCGTTAAAGCTTATAAAGTCCAAAGACGAACCC 754
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 749 GTAATGGGAGACCTCAAGGTTCATCCGGCTTTAAAGCTTATAAAGTCCAAAGACGAACCC 808
Query 755 ATTGTTAAGGTCGCTGGAGGACGTGT----G--------------TCG---GACACGCAA 793
|||||||||||||| ||||||||||| | ||| |||||||||
Sbjct 809 ATTGTTAAGGTCGCCGGAGGACGTGTCACTGACACGCAAAAGAAATCGTCTGACACGCAA 868
Query 794 AAGAAATAACACCAGTGAGTCATATTAACTGTGATTATCCGGTGCAATCTCCAAATGTTG 853
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 869 AAGAAATAACACCGGTGAGTCATATTAACTGCGATTATCCGGTGCAATCTCCAAATGTTG 928
Query 854 CTCATACGAAAAATGAATGGATCGATCTTCTTAGAACTC-AA-GATCCTTTAGGATGGAG 911
| | ||||||||||||||||||||||||||||||| || | |||||| ||||||||
Sbjct 929 A-C---C-AAAAATGAATGGATCGATCTTCTTAGAACTCTAAAGGTCCTTTCGGATGGAG 983
Query 912 TTTTCTTTTTGTGTTATTATTAGTGTTGCCGGAGAGACGGAATATT-CTTATCTTTTGAT 970
||||||| ||||||||||||||||||||| || ||| | |||||| | |||||||||||
Sbjct 984 GTTTCTTTATGTGTTATTATTAGTGTTGCCAGA-AGATGAAATATTTCCTATCTTTTGAT 1042
Query 971 TCTACAATGCATTTATATTTCTATTTACA 999
|||||||||||||||| |||||||| |||
Sbjct 1043 TCTACAATGCATTTAT-TTTCTATTCACA 1070
> AT4G23610.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:12314025-12314829
FORWARD LENGTH=805
Length=805
Score = 291 bits (157), Expect = 1e-77
Identities = 211/236 (89%), Gaps = 7/236 (3%)
Strand=Plus/Minus
Query 988 TTTCTATTTACAGACATCTATAAATAAGCTTAGAAAGGGAAACAAAATTTAATCTCCTTT 1047
||| ||||||||||| || | ||||||| |||||||||||||||||||||||||| |||
Sbjct 789 TTT-TATTTACAGAC--CTCT-AATAAGCGTAGAAAGGGAAACAAAATTTAATCTCTTTT 734
Query 1048 AGATTTTGCCCTGTTTTTAGGCATTTCA-TGTGTCTT-GAAACATTGAAATGTAGGCGTT 1105
|||||| || |||||||| | ||||| | ||| |||| |||||||||||||||||||||
Sbjct 733 AGATTTGGCTCTGTTTTTTGCCATTT-ATTGTTTCTTAAAAACATTGAAATGTAGGCGTT 675
Query 1106 AAGAAATTGTTCGTCGTCATCTTCATGTAACAATCCGTTTGAAGATGAACAGATTTCTTG 1165
|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 674 AAGAAATTGTTCGTTGTCATCTTCATGAAACAATCCGTTTGAAGATGAACAGTTTTCCTG 615
Query 1166 AAAATCTTCATCATCTTCACTTTACCTTTAACTTCAACACTGCTTTTCAAATTCAC 1221
||||||||||| |||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 614 AAAATCTTCATTTTCTTCACTCTACCTCTAACTTCAACACTGCTTTTCAAATCCAC 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5