BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492508
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23590.1 | Symbols: | Tyrosine transaminase family protein ... 2054 0.0
AT4G23600.1 | Symbols: CORI3, JR2 | Tyrosine transaminase famil... 976 0.0
> AT4G23590.1 | Symbols: | Tyrosine transaminase family protein
| chr4:12307126-12309647 FORWARD LENGTH=1546
Length=1546
Score = 2054 bits (1112), Expect = 0.0
Identities = 1382/1507 (92%), Gaps = 39/1507 (3%)
Strand=Plus/Plus
Query 1 TTCCAACGCTAGACATAAGAAATATGGGTAGCCACGGATGCGTTGATTGGCAGTTCAGTG 60
||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct 47 TTCCAACGCTAGAGTTAAGAAATATGGCTAGCCAAGGATGCGTAGATTGGCAGTTCAGTG 106
Query 61 GAAGCGATGCAGCCGAAAAGGCTGCCGC-AGCCTCCCTAGGGACTTACTCTTCTGAAATC 119
| || ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct 107 GCAGTGATGCAGCCGAAAAGGCCGCC-CAAGCCTCCCTAGGCACTTACTCTTCTGAAATC 165
Query 120 TTCGGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAGGAGGCAGAG 179
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 166 TTCAGTCTGTGTGACCCTCAAGGAAAGCCTATTTTGCCTCCACTAAGTGAAGAGGCAGAG 225
Query 180 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAAGCTGTCCTTTGCGGTACAGGAAACGCC 239
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 226 ACCAGCCATACCGCCGAAAAGGCGGTTGTTAAGGCTGTCCTTTGCGGTACGGGAAACGCC 285
Query 240 TACGCTCCTAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATTTAAACCGC 299
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 286 TATGCTCCAAGTATTGGCCTCCCGGTTGCCAAACGTGCTGTGGCGGAATATCTAAACCGA 345
Query 300 GATCTTGACAATAAGCTAACGGGAGATGATGTATATATGACTGTTGGATGCAAACAAGCG 359
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 346 GATCTTGACAATAAGCTAACGGGAGATGACGTATATATGACTGTTGGATGCAAACAAGCA 405
Query 360 ATCGAACTTGCGGTCAGTATCCTGGCTAAACCCAAAGCCAACATCTTGCTTCCGAGGCCT 419
||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 406 ATCGAGCTCGCGGTTAGTATTCTGGCTAAACCGAAAGCCAACATCTTGCTTCCGAGGCCA 465
Query 420 GGCTTCCCATGGGACATAGTCCACTCTATCTACAAAAACCTTGAGGTCCGAAGGTATGAA 479
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 466 GGCTTCCCATGGGACATGGTCCACTCTATCTACAAACACCTTGAGGTCCGAAGGTATGAG 525
Query 480 TTCATCCCCGAAAGAGACTTTGAGATTGATTTCGACAGCGTCACAGAGATGGCAGATGAG 539
|||||||| ||||||||||||||||| |||||| ||||||| | |||||||| ||| |||
Sbjct 526 TTCATCCCTGAAAGAGACTTTGAGATCGATTTCAACAGCGTTAGAGAGATGGTAGACGAG 585
Query 540 AACACGTTTGCGATATTTATAATCAACCCTCACAATCCCAATGGGAACTACTACACTGAG 599
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 586 AACACTTTTGCGATATTTATAATCAACCCCCACAATCCCAATGGGAACTACTACACTGAG 645
Query 600 GCTCATCTTAAGCAGCTCGCTACATTGGCTA-GGGAACTCGGGATAATGGTGGTTTCGGA 658
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 646 GCTCATCTTAAGCAGCTCGCTACATTGGC-ACGGGAACTCGGGATAATGGTCGTTTCGGA 704
Query 659 TGAAGTATATCGATGGACCGTGTTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 718
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 705 TGAAGTATATAGATGGTCCGTATTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTC 764
Query 719 CTCGATAGTACCCGTGATTACACTCGGGTCCATCTCTAAAGGATGGATTGTCCCAGGATG 778
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 765 CTCGATAGTACCAGTGATTACACTCGGGTCCATATCGAAAGGATGGATTGTCCCAGGATG 824
Query 779 GCGAACAGGCTGGCTCGCACTACACGATCTAAATGGTGTCCTTAGATCTACCAAGGTCTT 838
|||||| ||||||||||| |||||||||||||||||||| ||||||| || ||||||||
Sbjct 825 GCGAACGGGCTGGCTCGCGTTACACGATCTAAATGGTGTCTTTAGATCCACAAAGGTCTT 884
Query 839 AAAAGCTGCTAAAGAATTTTTGGAGATTACTTCTAAACCACCAACTGTTATCCAGGCGGC 898
||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 885 AAAAGCTGCGAAAGAATTTCTGGAGATTACTTCCAAACCACCAACTGTCATCCAGGCGGC 944
Query 899 TATTCCCACCATCTTGGAGAAAACTCCTCAAGAGTTCTTC-A-ATAGCAGGCAGAGTTTT 956
||||||||| ||||||||||||||||||||||| || ||| | | || ||| || ||||
Sbjct 945 TATTCCCACAATCTTGGAGAAAACTCCTCAAGATTTTTTCGAGA-AG-AGGGGGATTTTT 1002
Query 957 CTGAAAGATAAAGTGGATTTTGGATATTCTAAGCTCAAGCACATACCAACCCTCACCTGC 1016
|| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1003 CTAAAAGACAAAGTGGATTTTGGATATTCTAAGCTCAAGAACATACCAACTCTCACCTGC 1062
Query 1017 TACATGAAACCTGAAGCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TACATGAAACCTGAATCATGCACCTTCTTATGGACCAAGCTGGACCCATTGCATTTTGTA 1122
Query 1077 GACATTGAAGACGATCACGATTTCTGCAGGAAGCTTGCTAAGGAAGAAAACCTCGTTGTT 1136
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1123 GACATTGAAGACGATCACGACTTCTGCAGGAAGCTTGCTAAGGAAGAAAATCTCGTTGTT 1182
Query 1137 TTACCGGGGATTGCATTTGGCCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACT 1196
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1183 TTACCAGGAATTGCATTTGGTCAGAATAACTGGTTGAGGCATTCTATCGACATGGAGACT 1242
Query 1197 CCTAGATTGGAGGATGCATTTGATAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTATA 1256
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1243 CCAAGATTGGAGGATGCATTTGAAAGATTAAAGAGCTTCTGTGAACGCCATTCCGTTATA 1302
Query 1257 GTTGAAGCTTC---ACTAAAAGGCGTCAATGGCGTCAACTAAAGGGTC--TA-AG-T--C 1307
||||||||||| ||| |||| ||||||||||||||||||||||||| || | | |
Sbjct 1303 GTTGAAGCTTCTTCACTCAAAGACGTCAATGGCGTCAACTAAAGGGTCAATATAAATTTC 1362
Query 1308 TT--C-T-A---C----A--TATGCTATAATAATAAATGTGGGTGGTTTATTGATTTGAG 1354
|| | | | | | ||||||||||||||||||||| || ||||||||| ||||
Sbjct 1363 TTTGCCTTAAGTCTTTTACATATGCTATAATAATAAATGTGTGT--TTTATTGATATGAG 1420
Query 1355 ATCAATCATGAACACCTTCGTATCTGTAACAAATAAATTTGGTGTACTTATGACCATGTC 1414
||||||||||||||| || |||||||||||||||||| |||||| | |||| ||||||||
Sbjct 1421 ATCAATCATGAACACTTTTGTATCTGTAACAAATAAAATTGGTGAATTTATCACCATGTC 1480
Query 1415 GTCGTAATGTTTTCTCATAGTTTGCAAT-TT-CGAT-G-T--ATTTCTACTTTCCGAAAC 1468
|| ||||||||||||||||||||||||| || |||| | | ||||||||||| ||||||
Sbjct 1481 GT-GTAATGTTTTCTCATAGTTTGCAATATTTCGATCGATGTATTTCTACTTTTCGAAAC 1539
Query 1469 ATAAGAT 1475
|||||||
Sbjct 1540 ATAAGAT 1546
> AT4G23600.1 | Symbols: CORI3, JR2 | Tyrosine transaminase family
protein | chr4:12310619-12313212 FORWARD LENGTH=1634
Length=1634
Score = 976 bits (528), Expect = 0.0
Identities = 1173/1473 (80%), Gaps = 90/1473 (6%)
Strand=Plus/Plus
Query 39 TGCGTTGATTGGCAGTTCAGTGGAAGCGATGCAGCCGAAA-AGGCTGCCGCAGCCTCCCT 97
||| |||||||||| ||||| |||||||| || ||| ||| | ||||| || |||||| |
Sbjct 54 TGCATTGATTGGCAATTCAGCGGAAGCGAGGCGGCC-AAAGATGCTGCTGCGGCCTCCTT 112
Query 98 AGGGAC-T-TACTCTTCTGAAATCT-TCGGTCTGTGTGACCCTCAAGG-AAAGCCTATTT 153
||| | | ||| | |||| | ||| | | ||||| || ||||| || ||| || ||||
Sbjct 113 AGGCTCATATAC-C-TCTGCACTCTAT-GCCCTGTGCGATCCTCATGGCAAA-CCCATTT 168
Query 154 TGCCTCCACTAAGTGAGGAGGC-AGAGACCAGCCATACCGCCGAAAAGGCGGTTGTTAAA 212
|||| |||| || ||| || | ||||||||| |||| |||||||| || |||||||||
Sbjct 169 TGCCCCCACGAAATGA-GATCCTGGAGACCAGCAATACAGCCGAAAAAGCAGTTGTTAAA 227
Query 213 GCTGTCCTTTGCGG-TACAGGAAACGCCTACGCTCCTAGTATT-GGCCTCCCGGTTGCCA 270
||||| |||| || | | ||||||||||| |||||||| || |||||| ||| ||||
Sbjct 228 GCTGTTCTTTATGGCT-CGGGAAACGCCTATGCTCCTAG-CTTAGGCCTCGCGGCCGCCA 285
Query 271 AACGTGCTGTGGCGGAATATTTAAACCGCGATCTTGAC-AATAAGCTAACGGGAGATGAT 329
|| |||| || || || ||| |||||| | |||| | || ||||| || | ||||||
Sbjct 286 AAAGTGCCGTAGCAGAGTATCTAAACCAAGGTCTT-CCAAAGAAGCTTACCGCAGATGAC 344
Query 330 GTATATATGACTGTTGGATGCAAACAAGCGATCGAACTTGCGGTCAG-TATCCTGGCTAA 388
|| | ||||||| | |||||||||||||| || || || ||||| || || || |||||
Sbjct 345 GTGTTTATGACTCTGGGATGCAAACAAGCTATTGAGCTCGCGGT-AGACATTCTCGCTAA 403
Query 389 ACCCAAAGCCAACATCTTGCTTCCGAGGCCTGGCTTCCCATGGGACATAGTCCACTCTAT 448
||| ||||||||| | ||||||||||| || ||||||||||||||| |||||| ||| ||
Sbjct 404 ACCGAAAGCCAACGTTTTGCTTCCGAGTCCCGGCTTCCCATGGGACCTAGTCCGCTCCAT 463
Query 449 CTACAAAAACCTTGAGGTCCG-AAGGTATGAA-TTCATCCCCG-AAAGAGACTTTGAGAT 505
|||||| |||||||||||||| | ||| || ||| | || | ||||| ||||||| ||
Sbjct 464 CTACAAGAACCTTGAGGTCCGCCA-CTAT-AATTTCCTTCCAGAAAAGA-ACTTTGAAAT 520
Query 506 TGA-TTTCGACAGCGTCAC-AGAGATGGCAGATGAGAACACGTTTGCGATATTTATAATC 563
|| ||| || |||||| | || | | | || |||||||| ||||| ||||||||||||
Sbjct 521 CGACTTT-GATAGCGTC-CGAGCGCTCGTGGACGAGAACACATTTGCCATATTTATAATC 578
Query 564 AACCCTCACAATCCCAATGGGAACTA-CTACACTGAGGCTCATCTTAAGCAGCTCGCT-A 621
||||| ||||| |||||||| ||| | |||| | ||||||||||| || ||||| ||| |
Sbjct 579 AACCCCCACAACCCCAATGGTAAC-ACCTACTCCGAGGCTCATCTCAAACAGCTGGCTGA 637
Query 622 CATTGGCTAGGGAACTCGGGATAATGGTGGTTTCGGATGAAGTATATCGATGGAC-CGTG 680
| |||||| ||||||| ||| ||||||||||| || || || | | ||||||| | |
Sbjct 638 -ACTGGCTAAGGAACTCAAGATTATGGTGGTTTCTGACGAGGTTTTTAGATGGACAC-TC 695
Query 681 TTCGGGAGTAATCCATTTGTTCCAATGGGGAAATTCTCCTCGATAGTACCCGTGATTACA 740
|| || ||||| || |||||||| ||||| |||||||| ||||| ||||| ||| |||||
Sbjct 696 TTTGGTAGTAACCCTTTTGTTCCTATGGGAAAATTCTCGTCGATCGTACCAGTGGTTACA 755
Query 741 CTCGGGTCCATCTCTAAA-GGATGGATTGTCCCAGGATGGCGAACAGGCTGGCTCGCACT 799
||||| ||||| || ||| ||||||| ||||||||||||||||| || |||||| | ||
Sbjct 756 CTCGGATCCATATC-AAAGGGATGGAAAGTCCCAGGATGGCGAACTGGTTGGCTCACGCT 814
Query 800 ACACGATCTAAATGGTGTCCTT-AG-ATCTACCAAGGTCTTAAAAGCTGCTAAAGAATTT 857
||| |||||| | ||||| ||| || | | |||||||||||| |||||||| ||| ||||
Sbjct 815 ACATGATCTAGACGGTGT-CTTCAGAAAC-ACCAAGGTCTTACAAGCTGCTCAAG-ATTT 871
Query 858 T-TGGAGAT-TACTTCTAAACCACCAACTGTTATCCAGGCGGCTATTCC-CACCATCTTG 914
| | |||| || ||| || || || |||||||||||||||||||| | |||||||
Sbjct 872 TCTCCAGATAAAC-AATAACCCTCCGACAGTTATCCAGGCGGCTATTCCTGA-CATCTTG 929
Query 915 GAGAAAACTCCTCAAGAGTTCTTCAAT-AGCAGGCAGAGTTTTCTGAAAGATAAAGTGGA 973
|||||||||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 930 GAGAAAACTCCTCAAGAGTTTTTTGATAAG-AGGCAGAGTTTTCTGAAAGATAAAGTAGA 988
Query 974 TTTTGGATATTCTAAGCTCAAGCACATACCAACCCTCACCTGCTACATGAAACCTGAAGC 1033
||||| ||||||||||||||| |||| || | |||||| |||||||||||||| |||||
Sbjct 989 ATTTGGTTATTCTAAGCTCAAGTACATTCCTAGCCTCACTTGCTACATGAAACCCGAAGC 1048
Query 1034 ATGCACCTTCTTATGGACCAAGCTGGACCCATTGCA-TTTTGTAGACATTGAAGACGATC 1092
|||||||||||||||||| |||| || || | | ||||| ||||| ||||||||||
Sbjct 1049 CTGCACCTTCTTATGGACCGAGCTTGATTTATCG-AGCTTTGTGGACATCGAAGACGATC 1107
Query 1093 ACGA-TTTCTGCAGGAAGCTTGCTAAGGAAGAAAACCTCGTTGTTTTACCGGGGATTGCA 1151
| || ||| |||| ||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1108 AAGACTTT-TGCAATAAGCTTGCTAAAGAAGAAAACCTCGTCGTTTTACCAGGGATTGCA 1166
Query 1152 TTTGGCCAGAAGAACTGGTTGAGGCATTCTATCGACATGGAGACTCCTAG-ATTGGAGGA 1210
|| | ||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1167 TTCAGTCAGAAGAACTGGTTGAGGCATTCTATCGATATGGAGACTCCG-GTATTGGAGGA 1225
Query 1211 TGCATTTGATAGATTGAAGAGCTTCTGTGAACGCCATTCCGTTATAGTTGAAGCTTCACT 1270
|||||| || ||||||||||||||||| || ||||||||| | | ||||| | ||
Sbjct 1226 TGCATTGGAAAGATTGAAGAGCTTCTGCGATCGCCATTCCAACAAAA---AAGCTCCCCT 1282
Query 1271 AAAAGGCGTCAATGGCGTCAACTAAAGGGTCTA-A-G-TC-TT--C-TA---CAT--A-- 1316
|||| ||||||||| || || ||||||||| | | | | || | || ||| |
Sbjct 1283 CAAAGACGTCAATGGTGTTAAGTAAAGGGTCAATATGGTTATTTGCCTAAGTCATTTACG 1342
Query 1317 T--GCTATAATAATAAATG--TGGGTGGTTTATTGATTTGAGATCAATCATGAACACCTT 1372
| |||||||| |||||| || ||| ||| ||| |||||| | |||||||||||| ||
Sbjct 1343 TATGCTATAATGATAAATAAATGAGTG-TTTCTTGGTTTGAGGTAAATCATGAACACTTT 1401
Query 1373 CGT--ATCTGTAACAAATAAATTTGGTGTACTTA-TGACCA-T-GTCGTCGTAATGTTTT 1427
|| || ||||||||||||| | |||| ||||| | | || | || || ||||||||||
Sbjct 1402 AGTGTATTTGTAACAAATAAAATGGGTGCACTTAAT-ATCAATCGT-GT-GTAATGTTTT 1458
Query 1428 CTCATAGTTTGC-A-AT-TTCGATGTATTTCTA 1457
|||||||||||| | || || | ||||| ||||
Sbjct 1459 CTCATAGTTTGCTATATCTTTG-TGTATATCTA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5