BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492509
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23570.3 | Symbols: SGT1A | phosphatase-related | chr4:12299... 1925 0.0
AT4G11260.1 | Symbols: ATSGT1B, ETA3, RPR1, EDM1, SGT1B | phosp... 878 0.0
AT4G08093.1 | Symbols: | pseudogene of unknown protein | chr4:... 115 1e-24
> AT4G23570.3 | Symbols: SGT1A | phosphatase-related | chr4:12299878-12302719
FORWARD LENGTH=1419
Length=1419
Score = 1925 bits (1042), Expect = 0.0
Identities = 1207/1284 (94%), Gaps = 21/1284 (2%)
Strand=Plus/Plus
Query 1 GATGGCTAAGGAACTTGCTGATAAGGCTAAAGAGGCTTTCGTAGACGATGACTTCGATGT 60
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GATGGCGAAGGAGCTTGCTGATAAGGCTAAAGAGGCTTTCGTAGACGATGACTTCGATGT 196
Query 61 TGCTGTTGACTTATACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCGC 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TGCTGTTGACTTGTACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCGC 256
Query 121 TGATCGTGCTCAGGCCTATATCAAACTCGAAAGCTTCACTGCAGAGGCCGTGGCAGATGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TGATCGTGCTCAGGCCTATATCAAACTCGAAAGCTTCACTGCAGAGGCCGTGGCAGATGC 316
Query 181 GAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACTGC 376
Query 241 CTGTATGAAGCTTGAGGAGTATCGGACTGCTAAAACAGCTCTTGAAAAAGGTGCTTCTAT 300
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 377 CTGTATGAAGCTTGAAGAGTATCGGACTGCTAAAACAGCTCTTGAAAAGGGTGCCTCTAT 436
Query 301 CGCACCGAGTGAATCCAAATTTAAGAAGTTGATAGATGAATGCGATTTTCAAATCACAGA 360
| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 437 CACGCCGAGTGAATCCAAATTTAAGAAGTTGATAGATGAATGCAATTTTCTAATCACAGA 496
Query 361 AGAGGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGT-TCAACAGCAC 419
||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 497 AGAAGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTGTGA-CAGCAC 555
Query 420 CACCAGTATCTGAACTTGATCTTACCCCTGCAGCCAAGTACAGACACGAGTACTACCAAA 479
|||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||
Sbjct 556 CACCAGTATCTGAACTTGATGTCACCCCTACAGCCAAGTACAGGCACGAGTACTACCAAA 615
Query 480 AGCCAGAAGAAGTTGTGGTAACTATTTTTGCAAAAGGAATACCCAAGCAGAATGTTAACA 539
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 616 AGCCAGAGGAAGTTGTGGTAACTGTTTTTGCAAAAGGAATACCCAAGCAGAATGTTAACA 675
Query 540 TCGACTTTGGTGAACAAATTCTGAGTGTTGTGATTGATGTTCCTGGAGAGGAGGCGTATT 599
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 676 TCGACTTTGGTGAACAAATTCTGAGTGTTGTGATTGAGGTTCCTGGAGAGGATGCGTATT 735
Query 600 ATCTCCAACCGAGATTGTTTGGAAAGATTATACCAGATAAGTGCAAATATGAAGTATTGT 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 736 ATCTCCAACCGAGATTGTTTGGAAAGATAATACCAGATAAGTGCAAATATGAAGTATTGT 795
Query 660 CAACCAAAATTGAGATCCGTCTTGCAAAAGCCGATATAATCACATGGGCCTCCCTCGAAC 719
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CGACCAAAATTGAGATCTGTCTTGCAAAAGCCGATATAATCACATGGGCCTCCCTCGAAC 855
Query 720 ACGGCAAAGGGCCAGCAGTTTTGCCAAAGCCTAATGTCTCATCAGAGGTTTCGCAGAGGC 779
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 856 ACGGCAAAGGGCCAGCGGTTTTGCCAAAGCCTAATGTCTCATCAGAGGTTTCACAGAGGC 915
Query 780 CAGCTTACCCATCATCTAAGAAAGTTAAGGACTGGGACAAGCTCGAAGCTGAAGTGAAGA 839
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 916 CAGCTTATCCATCTTCTAAGAAAGTTAAGGACTGGGACAAGCTGGAAGCTGAAGTGAAGA 975
Query 840 AACAGGAAAAGGATGAGAAGCTGGAAGGAGACGCAGCTATGAACAAATTCTTCCGTGAGA 899
| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 976 AGCAGGAAAAAGATGAGAAGCTGGAAGGAGACGCAGCTTTGAACAAATTCTTCCGGGAGA 1035
Query 900 TATACCAGAATGCGGATGAGGATACGAGGCGAGCGATGAGCAAATCATTTGTGGAATCGA 959
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 TATACCAGAATGCGGATGAGGATATGAGGCGAGCGATGAGCAAATCATTTGTGGAATCGA 1095
Query 960 ATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTAAGAAAATCGAGAGCACTC 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1096 ATGGGACAGTGCTGTCAACAAACTGGCAAGAGGTTGGGACTAAGACAATCGAGAGTACTC 1155
Query 1020 CTCCGGATGGCATGGAGCTCAAGAAATGGGAGATCTGATCTC-T--GATATGAT-ATGAT 1075
||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1156 CTCCGGATGGCATGGAGCTCAAGAAATGGGAGATCTGATCTGATATGATATGATGATCCT 1215
Query 1076 TGCATTTGT--G--G--GT---TTT-GCCTAAATCTAGACAAGTCTTAAAACCTGGTCCC 1125
| | ||| | | | || ||| |||||||| ||||||| |||| ||||||||||||
Sbjct 1216 TTCCTTTTTATGCAGTTGTGAATTTTGCCTAAATGTAGACAAATCTTGAAACCTGGTCCC 1275
Query 1126 TTTCTTCCTGTAATGAGGGTCCTAAGGttttttcctttttGCTAAATATGGCTTTCTACT 1185
|||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||
Sbjct 1276 TTTCTTCCTGTAATGAGGATCCTAAGGTTTTTGCTTTTTTGTTAAATATGGCTTTCTACC 1335
Query 1186 TATGCTATGTTGTGACTTGTGAGTTATG--GTCTTTAGGACTCAACtttttt-tGAT-GT 1241
| ||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||
Sbjct 1336 TCTGCTATGTTGTGACTTGTGAGTTATATTGTCTTTAGGTCTCAACTTTTTTGTTTTTGT 1395
Query 1242 TTT-ATTTAAATATTCATAATTTC 1264
||| |||| | |||||||||||||
Sbjct 1396 TTTTATTTGAGTATTCATAATTTC 1419
> AT4G11260.1 | Symbols: ATSGT1B, ETA3, RPR1, EDM1, SGT1B | phosphatase-related
| chr4:6851277-6853860 REVERSE LENGTH=1456
Length=1456
Score = 878 bits (475), Expect = 0.0
Identities = 898/1096 (82%), Gaps = 53/1096 (5%)
Strand=Plus/Plus
Query 2 ATGGCTAAGGAACTT-GCTGATAAGGCTAAAGAGGC-TTTCGTAGACGATGACTTCGATG 59
||||| |||||| || || || || |||||||| || |||| |||| |||||||||||||
Sbjct 142 ATGGCCAAGGAA-TTAGCAGAGAAAGCTAAAGAAGCTTTTC-TAGATGATGACTTCGATG 199
Query 60 TTGCTGTTGACTTATACTCCAAAGCCATTGACTTGGATCCTAATTGCGCTGAGTTCTTCG 119
|||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 200 TTGCTGTTGACTTATACTCCAAAGCCATTGACTTGGATCCCAATTGCGCCGCCTTCTTCG 259
Query 120 CTGATCGTGCTCAGGCCTATATCAAACTCGA-AAGCTTCACTGCAGAGGCCGTGGCAGAT 178
| ||||||||||||||| | |||||| |||| || |||||||| | || | || | ||||
Sbjct 260 CCGATCGTGCTCAGGCCAACATCAAAATCGATAA-CTTCACTG-A-AG-CTGTTGTAGAT 315
Query 179 GCGAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCTTACCTAAGAAAAGGAACT 238
||||||||||| ||||||||||| || | ||| | ||||| || || ||||| || |||
Sbjct 316 GCGAACAAAGCCATTGAGTTGGAGCCAACGTTGGCAAAAGCCTATCTCAGAAAGGGCACT 375
Query 239 GCCTGTATGAAGCTTGAGGAGTATCGGACTGCTAAAACAGCTCTTGAAAAAGGTGCTTCT 298
|| ||||||||||| || || ||| | ||||||||| |||| || ||||| || ||||||
Sbjct 376 GCTTGTATGAAGCTAGAAGAATATAGTACTGCTAAAGCAGCCCTGGAAAAGGGAGCTTCT 435
Query 299 ATCGCACCGAGTGAATCCAAA-TTTAAGAAGTTGATAGATGAATGCGATTTTCAAATCAC 357
| ||||||| |||| ||||| ||||||||| ||||||||||||||||| ||| || |
Sbjct 436 GTTGCACCGAATGAA-CCAAAGTTTAAGAAGATGATAGATGAATGCGATCTTCGTATTGC 494
Query 358 AGAAGAGGAGAAAGATTTGGTTCAACCGGTGCCTTCGACTTTGCCTTCAAGTTCAACAGC 417
|||||| ||||||||||||||||| ||| |||| ||| |||||||||||| || ||| |
Sbjct 495 AGAAGAAGAGAAAGATTTGGTTCAGCCGATGCCACCGAGTTTGCCTTCAAGCTCTACAAC 554
Query 418 ACCACCAGTATCTGAA-CT--TGATC-T--TA--CC----CCTGCAGC-C-----AA--- 456
||||| || | | ||| || || || | | || |||||||| | ||
Sbjct 555 ACCACTAGCAACGGAAGCTGATGCTCCTCCTGTTCCAATTCCTGCAGCACCTGCCAAACC 614
Query 457 G-TA--CAGACACGAGTACTACCA-AAAGCCAGAAGAAGTTGTGGTAACTATTTTTGC-A 511
| | ||| ||||||| |||||| ||| |||||||||| ||||| || ||||| || |
Sbjct 615 GATGTTCAGGCACGAGTTCTACCAGAAA-CCAGAAGAAGCGGTGGTGACAATTTTCGCCA 673
Query 512 AAAGGAA-TACCCAAGCAGAATGTTAACA-TCGACTTTGGTGAACAAATTCTGAGTGTTG 569
||| || |||| ||| |||| || ||| |||| |||||||| || |||||||||||||
Sbjct 674 AAA--AAGTACCTAAGGAGAACGT-AACTGTCGAGTTTGGTGAGCAGATTCTGAGTGTTG 730
Query 570 TGATTGATGTTCCTGGAGAGGAGGCGTATTATCTCCAACCGAGATTGTTTGGAAAGATTA 629
| ||||||||| |||||||||| || ||| ||||||| ||||||||||| || ||||| |
Sbjct 731 TCATTGATGTTGCTGGAGAGGAAGCTTATCATCTCCAGCCGAGATTGTTCGGGAAGATAA 790
Query 630 TACCAGATAAGTGCAAATATGAAGTATTGTCAACCAAAATTGAGATCCGTCTTGCAAAAG 689
||||||| ||||||| || |||||||||||| |||||| |||||||||||||||| ||||
Sbjct 791 TACCAGAGAAGTGCAGATTTGAAGTATTGTCGACCAAAGTTGAGATCCGTCTTGCGAAAG 850
Query 690 CCGATATAATCACATGGGCCTCCCTCGAACACGGCAAAGGGCCA-GCAGTTTTGCC-AAA 747
| || |||||||| ||||||||||| ||| | || ||||||| | | |||||||| |||
Sbjct 851 CAGAGATAATCACCTGGGCCTCCCTTGAATATGGTAAAGGGCAAAGT-GTTTTGCCCAAA 909
Query 748 GCCTAATGTCTCATCAGAGGTTTCGCAGAGGCCAGCT-TACCCATCATCTAAGAAAGTTA 806
|| ||||||||||||| | | |||||||| |||| | |||||||| |||||| || |
Sbjct 910 CCC-AATGTCTCATCAGCGCTGTCGCAGAGACCAG-TGTACCCATCTTCTAAGCCAGCAA 967
Query 807 AGGACTGGGACAAGCTCGAAGCTGAAGTGAAGAAACAGGAAAAGGATGAGAAGCTGGAAG 866
| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| || |
Sbjct 968 AAGACTGGGACAAGTTGGAAGCTGAAGTGAAGAAACAGGAGAAGGATGAGAAGCTTGATG 1027
Query 867 GAGACGCAGCTATGAACAAATTCTTCCGTGAGATATAC-CAGAATGCGGATGAGGATACG 925
|||| ||||||||||||||||| ||| | || |||||| | || ||| ||||| || | |
Sbjct 1028 GAGATGCAGCTATGAACAAATTTTTCAGCGACATATACTC-GAGTGCAGATGAAGACATG 1086
Query 926 AGGCGAGCGATGAGCAAATCATTTGTGGAATCGAATGGGACAGTGCTGTCAACAAACTGG 985
||||| || |||| ||||||||||| || ||||||||||| || ||||| |||||||||
Sbjct 1087 AGGCGGGCAATGAACAAATCATTTGCAGAGTCGAATGGGACGGTACTGTCGACAAACTGG 1146
Query 986 CAAGAGGTTGGGACTAAGAAAATCGAGAGCACTCCTCCGGATGGCATGGAGCTCAAGAAA 1045
|||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||||
Sbjct 1147 AAAGAAGTTGGGACTAAGAAAGTGGAGAGCACTCCACCAGATGGCATGGAGCTCAAGAAG 1206
Query 1046 TGGGAG-ATCTGATCT 1060
|||||| || ||||||
Sbjct 1207 TGGGAGTAT-TGATCT 1221
> AT4G08093.1 | Symbols: | pseudogene of unknown protein | chr4:4990161-4991619
FORWARD LENGTH=1459
Length=1459
Score = 115 bits (62), Expect = 1e-24
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 161 GCAGAGGCCGTGGCAGATGCGAACAAAGCAATTGAGTTGGATCCTTCATTGACCAAAGCT 220
|||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 517 GCAGAGGCTGTGGCAGATGCGAACAAAGCAATTGAGTTGGATCATTCATTAATCAAAGCT 576
Query 221 TACCTAAGAAAAGG 234
||||||||||||||
Sbjct 577 TACCTAAGAAAAGG 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62148274710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5