BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492514
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23550.1 | Symbols: WRKY29, ATWRKY29 | WRKY family transcrip... 1338 0.0
> AT4G23550.1 | Symbols: WRKY29, ATWRKY29 | WRKY family transcription
factor | chr4:12291820-12293096 FORWARD LENGTH=934
Length=934
Score = 1338 bits (724), Expect = 0.0
Identities = 867/934 (93%), Gaps = 17/934 (2%)
Strand=Plus/Plus
Query 1 AGGTGGCTTATATGGACGAAGGAGACCTAGAAGCAATAGTCAGAGGCTACTCCGGCTCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGTGGCTTATATGGACGAAGGAGACCTAGAAGCAATAGTCAGAGGCTACTCCGGCTCCG 60
Query 61 GAAG-CGCGTTTTCCGGCGAAAGTTCCGGTGGGTTTTCACCTTCGTTTTGCCTTCCGATG 119
| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 61 G-AGACGCGTTTTCCGGCGAAAGTTCCGGTACGTTTTCACCTTCGTTTTGCCTACCGATG 119
Query 120 GAGACGTCTAGTTTCTACGAACCGGAGATAGAGACAACCGGTTTAGACGAGCTCGGTGAA 179
||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||
Sbjct 120 GAGACGTCTAGTTTCTACGAACCGGAGATGGAGACAAGTGGCTTAGATGAGCTCGGTGAA 179
Query 180 CTCTACAAACCCTTTTACCCTTTCTCCACACAAACGATCCTCACGAGCTCGGTCTCTCTC 239
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 CTTTACAAACCCTTTTACCCTTTCTCCACACAAACGATCCTCACAAGCTCGGTCTCTCTC 239
Query 240 CCCGAAGATTCAAGAA-GTTTCCGAGATGATAAGAAACAACGATCTCATGGTTGTCTTCT 298
|| |||||||||| || |||||||||||| |||||||||||||| |||||||||||| |
Sbjct 240 CCTGAAGATTCAA-AACCTTTCCGAGATGACAAGAAACAACGATCACATGGTTGTCTTTT 298
Query 299 ATCCAACGGATCAAGAGTTGATCATATCCGAATCCCAGAATCCAAATCAAAGAAGAGCAA 358
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 299 ATCCAACGGATCAAGAGCTGATCATATCCGAATTTCAGAATCCAAATCAAAGAAAAGCAA 358
Query 359 GAAGAATCAACAGAAGAGAGTTGTTGAGCAAGTGAAGGAAGAGAATCTGTTGTCGGACGC 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 359 GAAGAATCAACAGAAGAGAGTTGTTGAGCAAGTGAAAGAAGAGAATCTGTTGTCGGACGC 418
Query 419 ATGGGCGTGGCGTAAATACGGGCAGAAACCCATCAAAGGATCTCCATACCCAAGGAGTTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGGGCGTGGCGTAAATACGGGCAGAAACCCATCAAAGGATCTCCATACCCAAGGAGTTA 478
Query 479 TTACAGGTGTAGTAGCTCGAAAGGGTGTTTGGCAAGAAAACAAGTTGAAAGGAATCCTCA 538
|||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 479 TTACAGATGCAGTAGCTCAAAAGGGTGTTTGGCAAGAAAACAAGTCGAAAGAAATCCTCA 538
Query 539 AAACCCGGAGAAATTCACCATAACATACACTAATGAGCACAATCACGAATTACCAACCCG 598
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 539 AAACCCGGAGAAATTCACCATAACATACACTAATGAGCACAATCATGAACTACCAACCCG 598
Query 599 GAGAAACTCATTAGCCGGTTCGACTCGAGCCAAAACTTCCCAAACCAAAC-AATCCTTAA 657
|||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||
Sbjct 599 GAGAAACTCATTAGCCGGTTCGACTCGAGCAAAAACTTCCCAACCCAAACCAA-CCTTAA 657
Query 658 CCaaaaaaaCTGGAAAAGAAGTGGTTGTTTCTTCTCCC-ACAAGTAATCCCATGATCGCA 716
|||||||| | | ||||||||| | |||||||| ||| ||||||||||| |||||| ||
Sbjct 658 CCAAAAAATCCGAAAAAGAAGT--T-GTTTCTTC-CCCTACAAGTAATCCTATGATCCCA 713
Query 717 TCCGCCGATGAATCTTCTGTTGCGATTCAAGAAATGGGCGTTGTAGAAATTAGTACCCAC 776
||||| |||||||||||||||||| ||||||||||| |||||| |||| ||||| |||
Sbjct 714 TCCGCTGATGAATCTTCTGTTGCGGTTCAAGAAATGAGCGTTGCGGAAACGAGTACGCAC 773
Query 777 CAAGCAGCTGGAGAAATCCAGGGCA-----T-GAGTAACGGTTTACCATCGGATTTGATG 830
||||| ||||||| |||| ||||| | ||||||||||||||||||||||||||||
Sbjct 774 CAAGCGGCTGGAGCAATCGAGGGCCGCCGCTTGAGTAACGGTTTACCATCGGATTTGATG 833
Query 831 TCGGGGAGCGGAACTTTTCCGAGTTTTACCGGTGACTTCGATGAACTACTGAATAGCCAA 890
|| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 834 TCCGGGAGCGGAACTTTTCCAAGTTTTACCGGTGACTTCGATGAACTATTGAATAGCCAA 893
Query 891 GAGTTCTTCAGTGGGTACTTATGGAATTACTAGA 924
||||||||||||||||| ||||||||||||||||
Sbjct 894 GAGTTCTTCAGTGGGTATTTATGGAATTACTAGA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5