BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492520
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23500.1 | Symbols: | Pectin lyase-like superfamily protein... 2462 0.0
> AT4G23500.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:12264590-12267196 FORWARD LENGTH=1660
Length=1660
Score = 2462 bits (1333), Expect = 0.0
Identities = 1537/1634 (94%), Gaps = 19/1634 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaTCCATTTTCATTTCTCCTCTAGAAAAAACCGCCATGCCAACCTCTCTCTCCA 60
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 11 AAAAAAAATCCATTTTCATTTCTCCTCT-TAAAAAACCGCCATG---ACCTCTCTCTCCA 66
Query 61 CCGCCGGTTACCTTCTTCTCCTTCT-C--CT---TATCAGCTACGACGGTGGCTTCACT- 113
||||||||||||||||||||||||| | || ||| ||||||||||||||||||| |
Sbjct 67 CCGCCGGTTACCTTCTTCTCCTTCTCCTTCTCCCTATAAGCTACGACGGTGGCTTCA-TC 125
Query 114 GGAGCCGCCGATGCCGAACATGACCTCAGAGCCACTGATCTCCATAATCATCGCCATCGT 173
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GGAGCCGCCGATGCAGAACATGACCTCAGAGCCACTGATCTCCATAATCATCGCCATCGT 185
Query 174 CGCCACCGTAGCCACCGCCGCGGAGAAGAGTTCGAGTACTCAGCAATATCGTGTAGAGCT 233
|||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 186 CGCCACCGTAACCACCATCGCGGAGAAGAGTTTGAGTACTCAGCCATATCATGTAGAGCT 245
Query 234 TACTCAGCCTCGTTAGACGAGTTTGGTGCCGTGGGAGACGGTGTGACCTCAAATACGGCG 293
||||||||||| || ||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct 246 TACTCAGCCTCATTGGACGAGTTTGGCGCCGTAGGAGACGGTGTAACTTCAAATACAGCG 305
Query 294 GCGTTTCGCGATGCAGTCTCACAACTTAGCCGTTTTGCAGACTACGGTGGCTCATTGTTA 353
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 306 GCGTTTCGCGACGCGGTGTCACAACTTAGCCGTTTCGCAGACTACGGTGGCTCATTGTTA 365
Query 354 TTTGTTCCCGCCGGACGGTGGCTCACCGGGAGCTTTAACCTCACCAGCCATTTCACACTT 413
||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || |||
Sbjct 366 TTTGTTCCCGCCGGACGGTGGCTCACCGGAAACTTTAACCTGACCAGCCATTTTACGCTT 425
Query 414 TTCCTCCACCGTGATGCCGTTATCCTCGCCTCTCAAGAAGAGAGTGACTATGAAGTGATA 473
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTCCTCCACCGTGATGCTGTTATCCTCGCCTCTCAAGAAGAGAGTGACTATGAAGTGATA 485
Query 474 GAACCACTACCTTCGTACGGACGAGGGAGAGACACTGATGGTGGAAGGTTCATCAGTTTA 533
|| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| ||
Sbjct 486 GAGCCACTGCCTTCGTACGGAAGAGGGCGAGACACAGATGGTGGAAGGTTCATCAGTCTA 545
Query 534 CTTTTCGGTTCAAACTTAACCGACGTGGTTATCACCGGTGAGAATGGGACAATTGATGGA 593
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 546 CTTTTTGGTTCAAACTTAACCGATGTTGTTATCACCGGTGAGAATGGGACAATTGATGGA 605
Query 594 CAAGGAGAGCCATGGTGGGGAAAATTCAAGAGAGGAGAACTAAAATACACAAGACCTTAT 653
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 606 CAAGGAGAACCATGGTGGGGGAAATTCAAGAGAGGAGAACTAAAATACACAAGACCTTAT 665
Query 654 TTGATTGAGATTATGCATTCTGATGGTATCCAAATCTCCAATCTCACTTTCTTGAATTCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTGATTGAGATTATGCATTCTGATGGTATCCAAATCTCCAATCTCACTTTCTTGAATTCT 725
Query 714 CCTTCTTGGCATATTCACCCGGTCTACAGCAGAAATATATTTATCCAAGGTTTGACGATA 773
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 726 CCTTCTTGGCATATTCACCCGGTCTACAGCAGCAATATATATATCCAAGGTTTGACGATA 785
Query 774 TTAGCACCGGTCACGGTACCAAATACCGACGGGATCAACCCAGATTCTTGTACTAACACG 833
||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 786 TTAGCACCGGTCACGGTACCAAACACTGACGGTATCAACCCAGATTCTTGTACCAACACG 845
Query 834 AGGATTGAGGACTGCTACATTGTCTCCGGCGACGATTGTATCGCCGTGAAGAGCGGATGG 893
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 846 AGGATTGAGGACTGCTACATTGTCTCCGGCGACGATTGTATCGCCGTTAAAAGTGGATGG 905
Query 894 GATCAATACGGAATCAACTACGGCATGCCTACAAAACAGCTCTTGATCCGACGGCTCACA 953
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 906 GATCAATACGGAATCAACTACGGCATGCCTACGAAACAGCTCTTGATCCGACGGCTCACA 965
Query 954 TGCATTTCCCCTGACAGTGCCGTGATCGCTCTCGGCAGTGAAATGTCCGGTGGAATTGAA 1013
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGCATTTCTCCTGATAGTGCCGTGATCGCTCTCGGCAGTGAAATGTCCGGTGGAATTGAA 1025
Query 1014 GATGTTAGGGCTGAAGATATCGTCGCCATTAACTCTGAATCTGGAATTAGGATTAAAACA 1073
|||||| | ||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1026 GATGTTCGAGCTGAAGATATTGTTGCCATTAACTCTGAATCTGGAATCAGGATTAAAACA 1085
Query 1074 GCTATTGGACGAGGAGGATACGTGAAAGATGTATATGTAAGAGGAATGACAATGAAT-AC 1132
||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||| | ||
Sbjct 1086 GCTATCGGACGAGGAGGTTACGTGAAGGATGTATACGTAAGAGGAATGACAATGA-TGAC 1144
Query 1133 GATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCTCATCCTGACGAGCATTATGA 1192
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1145 AATGAAATATGTGTTTTGGATGACCGGAAGTTACGGTTCGCATCCGGACGATCATTATGA 1204
Query 1193 TCCGAAAGCGTTACCGGTGATTCAGAACATCAATTACCAAGATATGGTCGCGGAGAACGT 1252
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 1205 TCCGAAAGCGTTACCGGTGATTCAGAACATTAATTATCAAGACATGGTCGCCGAGAACGT 1264
Query 1253 GACGATGCCTGCTCAGTTGGCTGGAATATCGGGAGATCAGTTTACTGGAATCTGTATCTC 1312
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1265 GACGATGCCTGCTCAGTTAGCTGGAATATCGGGAGATCAGTTTACTGGAATTTGTATCTC 1324
Query 1313 TAACGTGACGATCACTCTTTCGAAGAAACCTAAGAAAGTGCTTTGGAATTGTACGGATGT 1372
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1325 TAACGTGACTATCACTCTATCGAAGAAACCTAAGAAAGTGCTTTGGAATTGTACTGATGT 1384
Query 1373 TTCGGGTTATACAAGTGGTGTGACTCCGCAGCCGTGTCAGCTT-TTGCCGGAGAAGCAGC 1431
|||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1385 TTCGGGTTATACTAGTGGTGTGACTCCGCAGCCGTGTCAG-TTGTTACCGGAGAAGCAGC 1443
Query 1432 CGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATGAAGTGAAGC 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CGGGGACGGTTGTGCCGTGTAATTTCCCGGAAGATCCGATTCCTATTGATGAAGTGAAGC 1503
Query 1492 TTCAACGTTGCTACTCCAGAAGAAGGAATATGTGAACATGTAA-AAGATCtttttttttt 1550
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1504 TTCAACGTTGCTACTCCAGAAGAAGGAATATGTGAACATGTAATAAGATCTTCTTTTTTT 1563
Query 1551 ttAACAAATACTTTTCTTGGGTTATAAGTAAACGTGTTATCAAATGGG-ACAGATTTTAT 1609
| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||
Sbjct 1564 T-AACAAATACTTTTCTTGGGTTATAAGTAAATGTGTTATCAAATGGGGACATATTTGAT 1622
Query 1610 TGAATAATAGACAA 1623
||||||||| ||||
Sbjct 1623 TGAATAATAAACAA 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5