BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492521
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 | chr4:12257676-12... 872 0.0
> AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 | chr4:12257676-12258411
REVERSE LENGTH=652
Length=652
Score = 872 bits (472), Expect = 0.0
Identities = 585/637 (92%), Gaps = 17/637 (3%)
Strand=Plus/Plus
Query 1 TTAGTACTCAGCGTTTTCTGATTAAGTTGTCGTACAAAACAAGTCTGCTAAATAATTAGG 60
|||||||||||| || |||||||||| |||||||||||||||||| |||| || |||||
Sbjct 3 TTAGTACTCAGCATTGTCTGATTAAGCTGTCGTACAAAACAAGTCAGCTATTTAGTTAGG 62
Query 61 GTTTGGTCAGC-ATTTAATAATCTATCAAGCTAATTGGCTCTCAATCGGACAATGAGCCG 119
|||||||| || ||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 63 GTTTGGTCGGCAATTAAATAATCTATCAACCTAATTGGCTCTCAATCGGAAAATGAGCCG 122
Query 120 AGGTGGGAGCTTTGGAGGCGGACAAAGCTCGTTAGGTTATCTTTTTGGGTCAGATAATGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 AGGTGGGAGCTTTGGAGGCGGACAAAGCTCGTTAGGTTATCTTTTTGGGTCAGACAATGA 182
Query 180 GATTCCAAAAACGCC---TCCACCGGTGGCCCCAAAGCCTGCACCACCGTACGGCGTAGA 236
|||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 183 GATTCCAAAAACTCCCGCTCCACCGGTAGCCCCAAAGCCTGCACCACCGTACGGTGTAGA 242
Query 237 TTCCACCGAGGAC-A--ATGAAGCTGACCAAAAGCCCAAGATCTCTAACAACAACTACCA 293
|||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 243 TTCCACAGAGGAGGACCATGAAGCTGACCAAAAACCCAAGATCTCTAACAACAACTACCA 302
Query 294 AAGAGCTCAGGGCCAAAACTCCGGCAACTTCGTCACCGATCGTCCAACGACGAAGGTGAA 353
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AAGAGTTCAGGGCCAAAACTCCGGCAACTTCGTCACCGATCGTCCAACGACGAAGGTGAA 362
Query 354 ATCGGTTCCTGGTGGAGGCTCATCTCTAGGATACATGTTCGGAGATAAGTAAAGGAATGA 413
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 363 ATCGGTTCCTGGTGGAGGCTCATCTCTAGGATACTTGTTCGGAGATAAGTGAAGAAATGA 422
Query 414 AAATGAAGTTAAAAAACTAGGGTTTGTATCTCTCTAGTGAGGCTTTTACTATAT-T-ATA 471
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 423 AAATGAAGTTAAAAAACTAGGGTTTGTATCTCTCTAGTGAGGCTTTTACTCTATATCATA 482
Query 472 TCATACGTAATGTAATGTAGAGATCCTTATCTAGATTTCTACACATCAGTTATTTATATT 531
| ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 483 -CGTACGTAATGTAATGTGGAGATCCCTATCTAGATCTCTACACATCACTTATTTATATT 541
Query 532 TACGTGTGGAAATGTGTGTTTTGAGTTTGCAGTTAATTAATTTCAACTTGTGGAACAAAG 591
||||| || |||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 542 TACGTATGAAAATGTGTGTTTTGAGTTAACAGTTAATTACTTTCAACTTGTGGAA-AAAG 600
Query 592 GATTCTACTTTCTAGTCGATATTTTCAGCAATATATA 628
| || | || |||| |||||||||||||||||||
Sbjct 601 GGTT-T-CT----AGTCAATATTTTCAGCAATATATA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30291190641
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5