BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492522
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23493.1 | Symbols: | unknown protein; Has 30201 Blast hits... 610 4e-174
> AT4G23493.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12256180-12257039
REVERSE LENGTH=560
Length=560
Score = 610 bits (330), Expect = 4e-174
Identities = 399/432 (92%), Gaps = 6/432 (1%)
Strand=Plus/Plus
Query 1 GCCTTTGAAATTATCC-AACT-AAAACAAATCTGCGATCAGTCTTCACTGAAGAAAAAAC 58
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 1 GCCTTTGAAATTATCCAAACTAAAAACAAATCTGCGATCAGTCTTCACTGAAG-AAAAGC 59
Query 59 TTTTGCGAAAGGAGAAATCGAGACACTCGTTTGATTTTGCTCAGTTTTTGAAATCTGGTA 118
||| || |||| ||||| |||||||||| ||||| ||||||||| ||||||||||| ||
Sbjct 60 TTTCGCAAAAGAAGAAACCGAGACACTCATTTGAATTTGCTCAGACTTTGAAATCTGATA 119
Query 119 TATATAGAGACCAACGTAGATCCTAACCTCATGCGACGTTTTCCTGCTCTTATAGAGAAG 178
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 TATATTGAGATCAACGTAGAACCTAACCTCATGCGACGTTTTCCTGCTCTTATAGAGAAG 179
Query 179 CTCAAACCGATCTTCACGGTCTCAGGATCAAACGGTAAAGTGGTGAGAACCATTGTACCA 238
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TTAAAACCGATCTTCACGGTCTCAGGATCAAACGGTAAAGTGGTAAGAACCATTGTACCG 239
Query 239 AAGAAACCTGTGAACGAGAACATTAGTGAAAGCGAAACACTGAAGAAGATGGAGGAAACG 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 AAGAAACCTGTGAACGAGAACATTAGTGAAAGCGAAACAATGAAGAAGATGGAGGAAACG 299
Query 299 GTAGAGCCAATGGTTGCCTTTAGTAGACCACCGCCATTTTCACCATTTGTCGGTCCATTG 358
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 300 GTAGAGCCTATGGTTGCCTTAAGTAGACCACCACCATTTTCACCATTTGTCGGTCCAGTG 359
Query 359 CTCGTGTATTCCCTTCTTCAATCATGG---TCTAGTCGCGATGAAGACGGCTAGTTGTGT 415
||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 360 CTCATGTATTCCCTGCTTCAATCATGGACGTCTAGCCGCGACGAAGACGGCTAGTTGTGT 419
Query 416 CTGCCAAAGTTT 427
| ||||||||||
Sbjct 420 CAGCCAAAGTTT 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5