BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492523
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23490.1 | Symbols: | Protein of unknown function (DUF604) ... 3057 0.0
AT4G11350.1 | Symbols: | Protein of unknown function (DUF604) ... 1131 0.0
> AT4G23490.1 | Symbols: | Protein of unknown function (DUF604)
| chr4:12251431-12254270 REVERSE LENGTH=2027
Length=2027
Score = 3057 bits (1655), Expect = 0.0
Identities = 1913/2030 (94%), Gaps = 47/2030 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTGCCCAAAGCGAA-CCCaaaaaaaaaaaaaaaaaaaaC-TTTGTCTTTCC 58
||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||
Sbjct 2 TCTCTCTCTCTGCCCAAAGAGAAGCCC-----AAAAAAAAAAAAAAACTTTTGTCTTTCC 56
Query 59 CTTAATCTCTCTCATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCATTTCTCATTGAT 118
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 CTTAATTTCTCTAATTTTCCCTCGATTTCTCTGGCATCAACAGTCTCA-TTCTCATTGAT 115
Query 119 CTTTCTTTATTGTTGCAAGAAAGATCCAtttttttCGGTTCGTTCTCTTCTGGGTTACGA 178
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTTTCTTTTTTGTAGCGAGAAAGATCCATTTTTTTCGGTTCGTTCTCTTCTGGGTTACGA 175
Query 179 ATC-AAGAGCT------ACACAG--ACACACTGTTTCCTGTTTCTCCCCTGATTTCAAAC 229
||| ||||||| |||||| |||||||||||||||||||||||| |||| |||||
Sbjct 176 ATCAAAGAGCTACACAGACACAGACACACACTGTTTCCTGTTTCTCCCCGGATTGCAAAC 235
Query 230 AGAACTAGGGTTTGTTTTCACAAATTTTGGATC----tttt----------------ttt 269
||||||||||||||||||||||||||||||||| |||| |||
Sbjct 236 AGAACTAGGGTTTGTTTTCACAAATTTTGGATCTTTTTTTTGAAGAAAAGAACAAAATTT 295
Query 270 GGATGAAAGGAAACCAGAAAGATTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 329
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 296 GGATGAAAGGAAACCAGAAAGACTCGTCGGAAAAACCGATATGGGATCGGAGCTCATCAA 355
Query 330 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTACATCTATACCCGGAATGTGGTCTTTAACCCGACCCGGTCCAAAACTTATGGTTTGGC 415
Query 390 TAATCTGCTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 449
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTATCTGTTTCATTGTCTTCACTTACATTATCTACATGCTTAAGCTTGTCTCTACCTCAC 475
Query 450 GCTCCTGTGACGATTCCACTTCTCTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCCT 509
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 476 GCTCCTGTGACGATTCCACTTCTTTCACCACCGTCTCTGCTCTCTCCACAAACGTCTCTT 535
Query 510 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGAGAGAA-TGGGAGGAGGAA 568
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 536 CAAATGTCTCGTCTTTATCCACCTCCTTAGCTTCACGGCGGCG-TAATTGGGAGGAGGAA 594
Query 569 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAAGAAGACACGGTGGTGGATAAGCTGACGGATCTTAACCACGTGGTGTTTGGGATCGCT 654
Query 629 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAG 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCGTCGTCTAAGCTATGGAAACAGAGGAAAGAGTATATCAAGATCTGGTATAAACCAAAA 714
Query 689 CACATGCGTGGCTACGTTTGGTTAGATAAAGAGGTGAGAAAGAG-CGTTAATGATGACGA 747
| ||||||||||||||||||||||||||||||||| | |||||| | ||| |||||| ||
Sbjct 715 CGCATGCGTGGCTACGTTTGGTTAGATAAAGAGGTTAAAAAGAGTC-TTAGTGATGATGA 773
Query 748 CGACGACGAGAAGCTGCTTCCGCCGGTGAAAATCTCCGGCGGAACTGCTTCTTTTCCTTA 807
||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 774 TGACGA--A-AAGCTTCTTCCTCCGGTGAAAATCTCCGGTGGAACTGCTTCGTTTCCTTA 830
Query 808 TACTAACAAACAAGGACAACGCTCGGCGTTACGGATCTCGAGGATTGTGTCTGAAACGCT 867
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 831 TACTAACAAACAAGGACAACGCTCTGCGTTACGGATCTCGAGGATTGTTTCTGAAACGCT 890
Query 868 GCGTTTAGGTCCGAAGAATGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTGTTTGT 927
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 891 GCGTTTAGGTCCGAAGAATGTTAGGTGGTTTGTGATGGGTGATGATGATACGGTGTTTGT 950
Query 928 TACTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 987
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TATTGATAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGG 1010
Query 988 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GAGCTTGTCGGAATCTCATTTACAGAACATATTTTTCTCGTATGGTATGGCTTATGGTGG 1070
Query 1048 AGGTGGGTTTGCTATAAGTTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1107
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGGTGGATTTGCTATAAGCTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTG 1130
Query 1108 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TATACAGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGA 1190
Query 1168 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACTTGGTGTTCCACTCACTAAAGAACTCGGATTTCACCAGTACGACGTTTACGGGAACCT 1250
Query 1228 CTTTGGCCTCCTCGCTGCACACCCAGTAACACCGTTCGTCTCAATGCACCACCTCGACGT 1287
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1251 CTTTGGCCTTCTCGCTGCACACCCAGTAACACCGTTCGTCTCGATGCACCACCTCGACGT 1310
Query 1288 GGTGGAACCGATCTTCCCGAATATGACACGTGTCCGTGCTCTAAAGAAGCTAACCCAACC 1347
|||||||||||| ||||| || |||||||||||||| || || |||||| | ||| ||||
Sbjct 1311 GGTGGAACCGATTTTCCCTAACATGACACGTGTCCGCGCCCTCAAGAAGATTACCGAACC 1370
Query 1348 TATGAAGCTCGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1407
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TATGAAGCTTGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAG 1430
Query 1408 CTGGACAATCTCCGTCTCCTGGGGCTACGCGGTACAAATATTCCGCGGAATTTTCTCTCC 1467
|||||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||||
Sbjct 1431 CTGGACCATCTCGGTCTCTTGGGGCTACGCGGTTCAGATTTTTCGCGGAATATTCTCTCC 1490
Query 1468 CCGGGAAATGGAAATGCCTTCTAGAACCTTTTTGAATTGGTACAAACGGGCGGATTACAC 1527
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1491 CCGAGAAATGGAAATGCCTTCTAGAACCTTCTTGAATTGGTACAAACGGGCGGATTACAC 1550
Query 1528 TGCTTACGCTTTCAACACCAGGCCGGTTAGCCGTAACCCGTGCCAAAAACCGTTTGTGTT 1587
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1551 TGCTTACGCTTTCAACACTAGGCCGGTTAGCCGGAACCCGTGTCAAAAACCGTTTGTGTT 1610
Query 1588 TTATATGTCGAGCACGAAATTCGACCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1647
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1611 TTACATGTCGAGCACGAAATTCGATCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1670
Query 1648 ACACCGTGTTTCGCATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAACAC 1707
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1671 ACACCGTGTTTCACATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAATAC 1730
Query 1708 CATCGTCGTTTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1767
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CATCGTCGTCTACAAGAAACCCGACCCTCATCTATGGGAAAGGTCACCTAGGAGGAATTG 1790
Query 1768 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTAG 1850
Query 1828 AGCAGGTGAAGTCACTGAGGTTAAGTAATTTTCTTAATCTAGTTT-TTTGTATTAAAGGG 1886
|||||||||||||||||| ||||||||||||| ||||| |||||| ||| | | ||||||
Sbjct 1851 AGCAGGTGAAGTCACTGAAGTTAAGTAATTTT-TTAATATAGTTTATTTTTGTGAAAGGG 1909
Query 1887 AAGAAAATTAGAGtttttttAGGCTGTTTTACCGTTCTTAATTTCTTGCCACGTTATTTA 1946
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1910 AAGGAAATTAGAGTTTTTTTAGGCTGTTTTACCGCTCTTAATTTCTTGCCACGTTATTTA 1969
Query 1947 AAATTTT-ATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 1995
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AAATTTTTATTCATTGAGATCCCGCCCTAGTTCTTCTCTCAGTATATGAT 2019
> AT4G11350.1 | Symbols: | Protein of unknown function (DUF604)
| chr4:6901682-6904244 FORWARD LENGTH=1640
Length=1640
Score = 1131 bits (612), Expect = 0.0
Identities = 1075/1293 (83%), Gaps = 54/1293 (4%)
Strand=Plus/Plus
Query 596 ACGGATCTTAACCACGTGGTGTTT-GGGATCGCTGCGTCGTCTAAGCTATGGAAACAGAG 654
|||||||| ||||| ||||| ||| || || ||||||||||| |||||||||||||| ||
Sbjct 291 ACGGATCTAAACCATGTGGT-TTTCGGTATTGCTGCGTCGTCGAAGCTATGGAAACAAAG 349
Query 655 GAAAGAGTATATCAAGATCTGGTATAAACCAAAGCACATGCGTGGCTACGTTTGGTTAGA 714
|||||||||||||||||| |||||||| |||||| | ||| | |||||||| ||||||||
Sbjct 350 GAAAGAGTATATCAAGATTTGGTATAAGCCAAAGAAAATGAGAGGCTACGTGTGGTTAGA 409
Query 715 TAAAGAGGTGAGAAAGAGCGTTAATGATGACG--A-C-GACGA-CGAG-AAGCTGCTTCC 768
||||||| ||||| ||| || || | | || || | || ||| | || ||
Sbjct 410 CGAAGAGGT---AAAGA----TAA-AAT-CCGAAACCGGA-GATCAAGAAAG-T-CTCCC 457
Query 769 GCCGGTGAAAATCTCCGGCGGA-ACTG-CTTCTTTTCCTTATACTAACAAACAAGGACAA 826
| |||||| ||||||||| || || | | || ||||||||||||||||||||||||||
Sbjct 458 GTCGGTGAGAATCTCCGG-TGATAC-GTCGTCGTTTCCTTATACTAACAAACAAGGACAC 515
Query 827 CGCTCGGCG-TTACGGATCTCGAGGATTGTGTCTGAAAC---GCTGCGT-TT-A----G- 875
|| || ||| ||| |||||||||||||||| || ||||| | || || || | |
Sbjct 516 CGATCAGCGATTA-GGATCTCGAGGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGA 574
Query 876 GTC--CGAAGAATGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTGTTTGTTACTGA 933
||| |||||| ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 575 GTCGAAGAAGAACGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTTTTTGTAACGGA 634
Query 934 TAATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGGGAGCTT 993
|||||| |||||||| |||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 635 TAATTTAATTAGGGTTTTGAGGAAGTATGATCATGAACAGATGTATTATATAGGGAGCTT 694
Query 994 GTCGGAATCTCATTTACAGAACA-TATTTTTCTCGTATGGTATGGCTTATGGTGGAGGTG 1052
||||||||||||||| ||||||| || ||||||| ||||| ||||||||||||||||| |
Sbjct 695 GTCGGAATCTCATTTGCAGAACATTA-TTTTCTCTTATGGAATGGCTTATGGTGGAGGAG 753
Query 1053 GGTTTGCTATAAGTTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTGTATAC 1112
| ||||| || ||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 754 GTTTTGCGATTAGTTATCCATTGGCTGTGGCTTTGAGTAAGATGCAAGATCAGTGTATTC 813
Query 1113 AGAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGAACTTG 1172
|||||||||| || |||||||| || |||||||| |||||||||||||||||||| ||||
Sbjct 814 AGAGGTATCCGGCTTTGTATGGTTCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTG 873
Query 1173 GTGTTCCACTCACTAAAGA-ACTCGGATTTCACCAGTACGACGTTTACGGGAACCTCTTT 1231
|||||||| | |||||||| | |||| |||||||| ||||||||| | ||||| |||||
Sbjct 874 GTGTTCCATTGACTAAAGAGA-TCGGTTTTCACCAATACGACGTTCATGGGAATCTCTTC 932
Query 1232 GGCCTCCTCGCTGCACA-CCCAGTAACACCGTTCGTCTCAATGCACCACCTCGACGTGGT 1290
|||||||| ||||| || || | |||||||||| || || |||||||| || || || ||
Sbjct 933 GGCCTCCTAGCTGCCCATCCGA-TAACACCGTTTGTATCGATGCACCATCTTGATGTTGT 991
Query 1291 GGAACCGATCTTCCCGAATATGACACGTGTCCGTGCTCTAAAGAAGCTAACCCA-ACCTA 1349
||||||||| || || || ||||| ||||| || ||| | ||||| |||| ||| ||| |
Sbjct 992 GGAACCGATTTTTCCAAACATGACTCGTGTTCGCGCTATCAAGAAACTAA-CCACACCGA 1050
Query 1350 TGAAGCTCGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAGCT 1409
||||| | || || || | ||||||||| || || |||||||| ||||| ||||| ||||
Sbjct 1051 TGAAGATTGATTCGGCTGCGCTTCTCCAACAATCAATATGCTATGACAAACACAAAAGCT 1110
Query 1410 GGACAATCTCCGTCTCCTGGGGCTACGCGGTACAAATATTCCGCGGAAT-TTTCTCTCCC 1468
|||| || || ||||| ||||| | ||||| || | ||||| || || |||||||||
Sbjct 1111 GGACTATTTCAGTCTCGTGGGGATTTGCGGTCCAGGTGTTCCGTGG-ATCATTCTCTCCC 1169
Query 1469 CGGGAAATGGAAATGCCTTCTAGAACCTTT-TTGAATTGGTACAAACGGGCGGATTACAC 1527
||||||||||||||||| ||||||| |||| ||||||||||||||| | |||||||||||
Sbjct 1170 CGGGAAATGGAAATGCCATCTAGAA-CTTTCTTGAATTGGTACAAAAGAGCGGATTACAC 1228
Query 1528 TGCTTACGCTTTCAACACCAGGCCGGTTAGCCGTAACCCGTGCCAAAAACCGTTTGTGTT 1587
|| ||||| ||||| || ||||| || || || || | ||||||||||||||||| ||
Sbjct 1229 CGCCTACGCATTCAATACTAGGCCCGTGAGTCGCAATCATTGCCAAAAACCGTTTGT-TT 1287
Query 1588 TT-ATATGTCGAGCACGAAATTCGACCAGCAGCTGAACACGACGGTTAGCGAATACACGA 1646
|| | |||||||| | ||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 1288 TTCACATGTCGAGTGCAAAATTTGACCCGCAGTTGAACACGACGGTTAGCGAATACACGA 1347
Query 1647 TACACCGTGTTTCGCATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAACA 1706
||| || ||| |||| || |||| |||||| | ||| | ||||||| ||||| ||||
Sbjct 1348 GACATCGGGTTCCGCAACCGGCTTGTCGATGGGATATGGCTAACCCAGAGGAGATCAACA 1407
Query 1707 CCATCGTCGTTTACAAGAAACCCGACCCTCATCTATGGGAA-AGGTCACCTAGGAGGAAT 1765
| || ||||| ||||| |||||||| ||||| |||| |||| || |||||||| || ||
Sbjct 1408 CTATAGTCGTCTACAAAAAACCCGATCCTCACCTAT-GGAACAGATCACCTAGAAGAAAC 1466
Query 1766 TGTTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGT 1825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1467 TGTTGCAGAGTATTACAAACAAAGAGGAATAATACATTATGGATCAATGTTGGTGTATGT 1526
Query 1826 AGAGCAGGTGAAGTCACTGAGGTTAAGTAATTT 1858
|||||||||||||||||||| || |||||||||
Sbjct 1527 AGAGCAGGTGAAGTCACTGAAGTAAAGTAATTT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98895073650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5