BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492525
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23470.1 | Symbols: | PLAC8 family protein | chr4:12249071-... 1676 0.0
> AT4G23470.1 | Symbols: | PLAC8 family protein | chr4:12249071-12251396
FORWARD LENGTH=1303
Length=1303
Score = 1676 bits (907), Expect = 0.0
Identities = 1177/1295 (91%), Gaps = 67/1295 (5%)
Strand=Plus/Plus
Query 1 AACGCCAGTTGCCATCCAGGGGAGGGGAGAAGAAGAATTTGTAATCTCAAGTTGACGGAT 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 1 AACGCCAGTTGCCATCCAGGGGAGGGGAGAAGAAGAATTTGTATTCTCAAGTTGTC-GAT 59
Query 61 -TCGAGAGAGATGAAGTCAGAAACACGTTTGT---------G-----AGA---G-TT-TG 100
| ||||||||||||||||||||||||||||| | ||| | || ||
Sbjct 60 AT-GAGAGAGATGAAGTCAGAAACACGTTTGTGAGAGAACAGCTTTTAGATGTGATTGTG 118
Query 101 GATCAGATTCTCAAAGACTTTTTTGCGAAGAGTCTCTGATCCTT-AATCGCTTCTCTCTC 159
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 119 GATCAGATTCTCAAAGAC-TTTTCGCGAAGAGTCTCTGATCCTTAAATCGCTTCTCTCTC 177
Query 160 GCTTGACCTCACTTCGTCGTCGAAATCAGATCCGTGTGAAAAAATGGCGCCGAAACAAGA 219
||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||| ||
Sbjct 178 GCTTGACCTCATTTCGTCGTCGAAATCAGATCCTTGTG--AAAAT---GCCGAAACAGGA 232
Query 220 TATGGAGATGATGGAGCTTCGCAAGAACTTCCGTAATGTTTGGCATACCGATCTCACCCA 279
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 233 TATGGAGAAGATGGAGCTTCGTAAGAACTTCCGTAATGTTTGGCATACCGATCTTACCCA 292
Query 280 CAGTATCCAGAACGATACTCCTTATTGCTGCTTCGCGTTGTGGTGTGCCCCTTGTGCATC 339
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 293 CAGTATCCAGAACGATACTCCTTATTGTTGCTTCGCGTTGTGGTGTGCCCCTTGTGCATC 352
Query 340 ATACTTGCTTCGCAAGCGTGCACTTTACGATGATATGTCAAGGTACATATGCTGCGCCGG 399
||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||
Sbjct 353 ATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGGTACGTCTGCTGTGCCGG 412
Query 400 TTACATGCCTTGTAGTGGTAGGTGTGGAGAAACCAAATGTCCTCAACTTTGTCTTGCTAC 459
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 413 TTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCAC 472
Query 460 TGAGGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCGACTCGCTTTCTTCTGCAAGATGA 519
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 473 TGAGGTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAGATGA 532
Query 520 GTTCCAAATTCAGACGACACAATGTGACAACTGCATCATTGGTTTCATGCTTTGCCTCAA 579
|||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 533 GTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTGGTTTCATGGTTTGCCTCAG 592
Query 580 CCAAGTGGCTTGCATATTCTCCATAGTTGCATGTATTGTCGGTATTGATGAGCTTTCAGA 639
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 593 CCAAGTGGCTTGCATATTCTCCATAGTTGCATGTATTGTCGGTATGGATGAGCTTTCAGA 652
Query 640 AGCTTCTCAGTTGCTCTCATGTTGCTCTGACATTGTGTACTGCACGGTTTGCGCATGTAT 699
|||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 AGCTTCTCAGATACTCACATGTTGCTCTGACATGGTGTACTGCACGGTTTGCGCATGTAT 712
Query 700 GCAGACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAGCCAAT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCAGACACAACACAAGATGGAAATGGACAAGAGGGACGGTAAGTTCGGGCCACAGCCAAT 772
Query 760 GGCAGTGCCTCCGGCTCAGCAAATGTCACGGTTTGATCAAGCCATCCCACCCGCAGTCGG 819
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 773 GGCAGTGCCTCCGGCTCAGCAAATGTCACGGTTTGATCAAGCCACCCCACCCGCAGTCGG 832
Query 820 TTACCCTCCACAACAAGGTTACCCGCCTTCTGGTTATCCTCAACATCCTCCACAAGGTTA 879
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 833 TTATCCTCCACAACAAGGTTATCCACCTTCTGGTTATCCTCAACACCCTCCACAAGGTTA 892
Query 880 TCCTCCTTCTGGCTATCCTCAACACCCCCCTCCATCAGCTTATTCTCAATACCCTCCCGG 939
||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||
Sbjct 893 TCCACCTTCTGGCTATCCTCAAAACCCTCCTCCCTCAGCTTATTCTCAATACCCTCCTGG 952
Query 940 AGCTTATCCTCCTCC-C--GCTTACCCAAAGTAATCATCTCTCTTTACCTGTTTTCTCTT 996
|||||||||||||| | ||||||||||||| |||| |||| || ||||||||||||
Sbjct 953 GGCTTATCCTCCTCCTCCCGCTTACCCAAAGTGATCA-CTCT-TTG-CCTGTTTTCTCTC 1009
Query 997 CCGATTGGAAAAATCTATTTCATCTCTTTTTAATATATATACTGTCTTGTTATGGGTCAA 1056
|||||||||||| | |||||||||| ||||| || || ||||||||||| |||||||
Sbjct 1010 CCGATTGGAAAATTTTATTTCATCT-TTTTT--TA-ATG--CTGTCTTGTTACGGGTCAA 1063
Query 1057 GCGTTGAGCGTTCGCTGATTGTTTTGAGGTCGTTGTTTGTATGAGATGTTGACCTCACAT 1116
| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1064 GAATTGAACGTTCGCTGATTGTTTTGAGGTCGTTGTTTGTATGAGATTTTGACCTCGCAT 1123
Query 1117 -TT-T-GTTGTTTTCTGAAACGTCCCTCTTGGACTAAGAGATTTCATGA-TTT------- 1165
|| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1124 GTTGTTGTTGTTTTCTGAAACGTCCCTCTTGGACTAAGAGATTTCATGACTTTTTCCTTT 1183
Query 1166 ------AAATTCTCTCTTTATCGAAAGTACAGA--A-----TCCAATACAATTCACG-AT 1211
||||||||||||| ||||||||||||| | |||||||||||||||| |
Sbjct 1184 CCTTTTAAATTCTCTCTTTTTCGAAAGTACAGACTACAGAGTCCAATACAATTCACGCA- 1242
Query 1212 CCGTATATACAGGAAAAACATATTGTCCTGATAAA 1246
||||||||||||||||||||| |||||||||||||
Sbjct 1243 CCGTATATACAGGAAAAACATTTTGTCCTGATAAA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5