BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492536
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsi... 1748 0.0
AT4G00430.1 | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane i... 652 0.0
AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane i... 603 1e-171
> AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic
protein 1;5 | chr4:12220743-12222371 FORWARD LENGTH=1129
Length=1129
Score = 1748 bits (946), Expect = 0.0
Identities = 1054/1106 (95%), Gaps = 7/1106 (1%)
Strand=Plus/Plus
Query 3 TGGTGATAGAGTGAGAGAGAAACATGGAGGGAAAAGAAGAAGACGTGAATGTCGGAGCCA 62
|||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 27 TGGTGATAGAGTGAGAGAGAAACATGGAAGGCAAAGAAGAAGACGTCAATGTTGGAGCCA 86
Query 63 ACAAGTTCCCGGAGAGGCAGCCGATCGGTACGGCGGCGCAGACAGAGAGCAAGGACTACA 122
|||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 87 ACAAGTTCCCAGAGAGACAGCCGATCGGTACGGCGGCTCAGACGGAGAGCAAGGACTATA 146
Query 123 AGGAACCACCTCCGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTTTACA 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 147 AGGAACCACCACCGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTCTACA 206
Query 183 GAGCAGGCATAGCTGAGTTCATAGCCACTTTCCTTTTCCTCTACGTCACCGTTTTGACAG 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GAGCAGGGATAGCTGAGTTCATAGCCACTTTCCTTTTCCTCTACGTCACCGTTTTGACAG 266
Query 243 TCATGGGCGTTAAGAGAGCTCCTACTATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTT 302
||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 267 TCATGGGTGTTAAGAGAGCTCCCAATATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTT 326
Query 303 GGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTATTGTACTGCTGGAATCTCAGGAGGAC 362
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 327 GGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGAGGAC 386
Query 363 ATATTAATCCGGCAGTGACTTTTGGTTTGTTCTTGGCGAGGAAGTTGTCTTTAACCAGAG 422
||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 387 ATATTAATCCGGCGGTGACTTTTGGTTTGTTCTTGGCGAGGAAGCTATCTTTAACCAGAG 446
Query 423 CTCTGTTCTACATAGTAATGCAGTGCCTTGGAGCTATTTGTGGTGCTGGTGTGGTTAAAG 482
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 447 CTCTGTTCTACATAGTAATGCAGTGCCTTGGAGCTATATGTGGTGCTGGTGTGGTTAAAG 506
Query 483 GGTTTCAACCAGGGCTTTACCAGACGAATGGCGGTGGAGCAAATGTGGTGGCTCATGGTT 542
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 507 GGTTTCAACCAGGGCTGTACCAGACGAATGGCGGTGGAGCTAATGTGGTGGCTCATGGTT 566
Query 543 ACACAAAGGGTTCAGGTCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ACACAAAGGGTTCAGGTCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTG 626
Query 603 TTTTCTCAGCTACTGATGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTC 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTTTCTCAGCTACTGATGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTC 686
Query 663 CGCTTCCAATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATCACTGGAA 722
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 687 CGCTTCCAATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATTACTGGAA 746
Query 723 CTGGCATTAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGGTCATGCTT 782
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 747 CTGGCATTAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGATCATGCTT 806
Query 783 GGGATGACCATTGGATTTTCTGGGTCGGTCCATTCATCGGTGCTGCGCTTGCTGCTCTGT 842
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 807 GGGATGACCATTGGATCTTCTGGGTCGGTCCATTCATTGGTGCTGCGCTTGCTGCTCTGT 866
Query 843 ACCATCAGATAGTCATCAGAGCTATTCCTTTCAAGTCCAAGGCATAAAGCTTCCTACATA 902
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 867 ACCATCAGATAGTCATCAGAGCTATTCCTTTCAAGTCCAAGACATAAAGTTTCCTACATA 926
Query 903 TTCTGTGATCATCATCGAGCTAAGAATATATCAATCTTTCAAT-CTATGTACACTCCTCT 961
|||| ||||||||||| |||||||||||||||||||||| ||| |||| | | || |||
Sbjct 927 TTCTCTGATCATCATCAAGCTAAGAATATATCAATCTTT-AATTCTATATGCTTTCTTCT 985
Query 962 TGTTTCCTATGTCCCTTGTGTGATGATCTCTATATCTACCACTGGGGCTTGG-TCTTGTA 1020
||||||||||||| | |||||||||||||||||| ||||||| | |||| | |||||||
Sbjct 986 TGTTTCCTATGTCA-T-GTGTGATGATCTCTATATGTACCACTAGAGCTTTGATCTTGTA 1043
Query 1021 ACATTGTATAA-GTGTAATTTATTATGTACCAGTGGCATTGTATCTTGTTACATTAATTA 1079
||| |||| || ||||||| ||||||||| || |||||||||||||||| ||||||||||
Sbjct 1044 ACAGTGTA-AATGTGTAATCTATTATGTATCAATGGCATTGTATCTTGTAACATTAATTA 1102
Query 1080 TGTCAATGGAAGAATACATTGTGTAC 1105
||||||||||||||||||||||||||
Sbjct 1103 TGTCAATGGAAGAATACATTGTGTAC 1128
> AT4G00430.1 | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane
intrinsic protein 1;4 | chr4:185450-187627 REVERSE LENGTH=1653
Length=1653
Score = 652 bits (353), Expect = 0.0
Identities = 702/871 (81%), Gaps = 22/871 (3%)
Strand=Plus/Plus
Query 17 GAGAGAAACATGGAGGGAAAAGAAGAAGACGTGA--ATGTCGGAGCCAACAAGTTCCCGG 74
||||| || ||||| || ||||||||||| || | | || ||||| |||||||||||||
Sbjct 90 GAGAG-AA-ATGGAAGGCAAAGAAGAAGATGT-ACGA-GTGGGAGCTAACAAGTTCCCGG 145
Query 75 AGAGGCAGCCGATCGGTACGGCGGCGCAG-ACAGAGAGCAAGGACTACAAGGAACCACCT 133
||||||| || |||||||| |||| ||| || || |||||||||||| || ||||||
Sbjct 146 AGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGA-CAAGGACTACAAAGAGCCACCT 204
Query 134 CCGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTTTACAGAGCAGGCATA 193
|| ||||| | ||||| ||||||||||||| || |||||||| |||||||| || |||
Sbjct 205 CCTGCGCCACTGTTCGAGCCCGGCGAGCTCAGCTCATGGTCTTTCTACAGAGCCGGAATA 264
Query 194 GCTGAGTTCATAGCCACTTTCCTT-TTCCTCTACGTCACCGTTTTGACAGTCATGGGCGT 252
|||||||| || || ||||| ||| || |||||| |||| |||||||| || ||||| ||
Sbjct 265 GCTGAGTTTATCGCTACTTT-CTTGTTTCTCTACATCACTGTTTTGACTGTAATGGGAGT 323
Query 253 TAAGAGAGCTCC-TACTATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTG 311
||||||||| || || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 324 TAAGAGAGCACCAAAC-ATGTGTGCTTCTGTTGGAATCCAAGGTATCGCTTGGGCTTTTG 382
Query 312 GTGGCATGATCTTTGCTCTTGTTTATTGTACTGCTGGAATCTCAGGAGGACATATTAATC 371
|||||||||||||||||||||| || |||||||||||||| ||||| ||||| || || |
Sbjct 383 GTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACATCAACC 442
Query 372 CGGCAGTGACTTTTGGTTTGTTCTTGGCGAGGAAGTTGTCTTTAACCAGAGCTCTGTTCT 431
| || || || || ||| |||||||||| ||||||| ||| | |||||||| ||||||
Sbjct 443 CTGCTGTAACATTCGGTCTGTTCTTGGCTCGGAAGTTATCTCTGACCAGAGCAGTGTTCT 502
Query 432 ACAT-AGTAATGCAGTGCCTTGGAGCTATTTGTGGTGCTGGTGTGGTTAAAGGGTTTCAA 490
|||| | || |||| || |||||||| || |||||||| || || || ||||| |||| |
Sbjct 503 ACATGATTA-TGCAATGTCTTGGAGCCATCTGTGGTGCCGGAGTCGTCAAAGG-TTTCCA 560
Query 491 -CCAGGGCTTTACCAGACGAAT-GGCGGTGGAGCAAATGTGGTGGCTCATGGTTACAC-A 547
||| || |||||||| | || ||||| || || || |||||||| ||||| |
Sbjct 561 GCCAACGCCGTACCAGACTC-TCGGTGGTGGTGCTAACACCGTTGCTCATGGCTACACCA 619
Query 548 AAGGGTTCAGGTCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTC 607
|||| ||| || |||||||| || || | ||||| || ||||| || |||||||| |||
Sbjct 620 AAGG-TTCTGGCCTTGGTGCTGAAATCATCGGAACATTCGTTCTCGTCTACACTGTCTTC 678
Query 608 TCAGCTACTGATGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTCCGCTT 667
|| || || || || |||||||| ||| | ||||| || ||||| || ||||| |||||
Sbjct 679 TCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTCCCGATTTTGGCGCCGCTC 738
Query 668 CCAATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATCACTGGAACTGGC 727
||||| || ||||| || |||||||| |||||||| || || || ||||| || || ||
Sbjct 739 CCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATACCGATCACCGGGACCGGA 798
Query 728 ATTAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGGTCA-TGCTTGGGA 786
|| ||||| || || ||||| ||||| || || ||||||||||||| || | |||||||
Sbjct 799 ATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACT-CTTGGGA 857
Query 787 TGACCATTGGATTTTCTGGGTCGGTCCATTCATCGGTGCTGCGCTTGCTGCTCTGTACCA 846
||||||||||||||||||||| || |||||||| || || || || || || || || ||
Sbjct 858 TGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTATATCA 917
Query 847 TCAGATAGTCATCAGAGCTATTCCTTTCAAG 877
||||| ||||||||||| ||||||||||||
Sbjct 918 CCAGATTGTCATCAGAGCGATTCCTTTCAAG 948
> AT1G01620.1 | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane
intrinsic protein 1C | chr1:225665-227302 REVERSE LENGTH=1308
Length=1308
Score = 603 bits (326), Expect = 1e-171
Identities = 689/865 (80%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 26 ATGG-AGGGAAAAGAAGAAGACG-T-GAATGTCGGAGCCAACAAGTTCCCGGAGAGGCAG 82
|||| |||| |||||||| || | | | | || ||||| ||||||||||||||||||||
Sbjct 127 ATGGAAGGG-AAAGAAGAGGATGTTCG-A-GTGGGAGCTAACAAGTTCCCGGAGAGGCAA 183
Query 83 CCGATCGGTACGGCGGCGCAGACAGAGAGCAAGGACTACAAGGAACCACCTCCGGCGCCG 142
||||| ||||| |||| ||||| | || ||| ||||||||||| ||||| || || ||
Sbjct 184 CCGATAGGTACATCGGCTCAGAC-G-GA-CAAAGACTACAAGGAGCCACCACCAGCTCCA 240
Query 143 TTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTTTACAGAGCAGGCATAGCTGAGTTC 202
|||||||| || |||||||| | || ||||| || |||||||| || || || ||||||
Sbjct 241 TTTTTCGAGCCAGGCGAGCTGAGTTCGTGGTCCTTCTACAGAGCCGGAATCGCCGAGTTC 300
Query 203 ATAGCCACTTTCCT-TTTCCTCTACGTCACCGTTTTGACAGTCATGGGCGTTAAGAGAGC 261
|||||||| ||||| ||| || ||| | || || |||||||| ||||| || ||||||||
Sbjct 301 ATAGCCACCTTCCTGTTT-CTATACATAACAGTATTGACAGTGATGGGAGTGAAGAGAGC 359
Query 262 TCC-TACTATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGA 320
|| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 360 ACCAAAC-ATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTTGGGCTTTCGGTGGCATGA 418
Query 321 TCTTTGCTCTTGTTTATTGTACTGCTGGAATCTCAGGAGGACATATTAATCCGGCAGTGA 380
||||||| ||||| || ||||||||||||||||| || || || || || || || ||||
Sbjct 419 TCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGGCACATAAACCCAGCGGTGA 478
Query 381 CTTTTGGTTTGTTCTTGGCGAGGAAGTTGTCTTTAACCAGAGCTCTGTTCTACATAGTAA 440
| |||||| |||||||||| | ||| |||| || || |||||| | || ||||| || |
Sbjct 479 CATTTGGTCTGTTCTTGGCTCGTAAGCTGTCATTGACGAGAGCTGTCTTTTACATCGTGA 538
Query 441 TGCAGTGCCTTGGAGCTATTTGTGGTGCTGGTGTGGTTAAAGGGTTTCAACCAGGGCTTT 500
|||| || || ||||| || || || || || || || ||||| || || ||| | ||
Sbjct 539 TGCAATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAGGCTTCCAGCCAAATCCTT 598
Query 501 ACCAGACGAAT-GGCGGTGGAGCAAATGTGGTGGCTCATGGTTACACAAAGGGTTCAGGT 559
|||| || | ||||| ||||| || || ||||| || ||||| ||||| || |||
Sbjct 599 ACCAAACTC-TCGGCGGAGGAGCCAACACAGTCGCTCACGGCTACACTAAGGGCTCTGGT 657
Query 560 CTTGG-TGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTCTCAGCTACTGA 618
|||| ||| ||||| | ||||| || || || || ||||| || ||||| || |||||
Sbjct 658 -TTGGGTGCTGAGATAATCGGAACCTTCGTCCTTGTCTACACGGTCTTCTCCGCCACTGA 716
Query 619 TGCTAAGAGAAGTGC-CAGAGACTCTCATGTCCCTATCTTGGCTCCGCTTCCAATTGGGT 677
|| |||||||| || | | ||||| || || || || ||||| || || ||||| || |
Sbjct 717 CGCCAAGAGAAGCGCTC-GTGACTCCCACGTTCCGATTTTGGCACCACTCCCAATCGGAT 775
Query 678 TTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATCACTGGAACTGGCATTAACCCGG 737
| ||||| |||||||| |||||||| || || |||||||| ||||| || |||||||| |
Sbjct 776 TCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCAATCACCGGAACAGGAATTAACCCAG 835
Query 738 CCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGGTCATGCTTGGGATGACCATTGGA 797
| |||||||| |||||||| |||||||||||||||| || |||||||| ||||| ||||
Sbjct 836 CTAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTTGGGACGACCACTGGA 895
Query 798 TTTTCTGGGTCGGTCCATTCATCGGTGCTGCGCTTGCTGCTCTGTACCATCAGA-TAGTC 856
| ||||||||||| |||||||| || || || ||||| ||||| ||||| || | | |||
Sbjct 896 TATTCTGGGTCGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCA-ACTTGTC 954
Query 857 ATCAGAGCTATTCCTTTCAAGTCCA 881
|||||||| ||||| ||||||||||
Sbjct 955 ATCAGAGCCATTCCATTCAAGTCCA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5