BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492537
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23390.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1871 0.0
AT4G23370.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 508 4e-143
> AT4G23390.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:12217806-12219713 REVERSE LENGTH=1339
Length=1339
Score = 1871 bits (1013), Expect = 0.0
Identities = 1172/1249 (94%), Gaps = 9/1249 (1%)
Strand=Plus/Plus
Query 1 ATATAGATTAAGATCCTTGATTCATCATGAGGTATTCCAATAAAC---TTATTTTGCTAA 57
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1 ATATAGATTAAGATCCTTGATTCATCATGAGGTATTCCAATAAACTAATTATCTTGCTAA 60
Query 58 CTTTATCAACAATGGCTCTCATTTTAGTTGGGGAGAGTCACAAATCAGTTCCTTCGGATG 117
||||||||||||| ||||||||||||||||| |||||||||||| || | |||||| | |
Sbjct 61 CTTTATCAACAATAGCTCTCATTTTAGTTGGAGAGAGTCACAAAACAATACCTTCGAAAG 120
Query 118 AGGAGGAAGAAGAGATGGAGAAGTTACTCAACTATCTCAATAAACCTGCAGTCAAAAGTT 177
||||| ||||||||||| ||||| |||| | |||||||||||||||||||||||||||||
Sbjct 121 AGGAGAAAGAAGAGATGAAGAAGCTACTTACCTATCTCAATAAACCTGCAGTCAAAAGTT 180
Query 178 TCCAAACTGAACCTGGTTATATATTGGATTGCATCGACATTCAAAAACAGTTAGCTTTTG 237
|||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 181 TCCAAACTGAACATGGTTATATATTTGACTGCATCGACATTCAAAAACAGCTAGCTTTTG 240
Query 238 ATCATCCTTTACTCAAGAACCATTCTATTAAGTTGAAGCCCACAATTATACCTAAATGGA 297
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 241 ATCATCCTTTGCTCAAGAACCATTCTATTAAGTTGAAACCCACAACTATACCTAAATGGA 300
Query 298 CCAAAGATAACAACACTTCTCATAAATCTAGTTCAT-TGCCATTTCGACAAGATGGCATA 356
|||||||||||||| ||||||||||| ||||||| | |||||||||||||||||| ||||
Sbjct 301 CCAAAGATAACAACGCTTCTCATAAAACTAGTTC-TCTGCCATTTCGACAAGATGACATA 359
Query 357 AGTTGTCCAGTTGGGACAGTCATTGTAAAAAGGATTATACTTGAAGATCTTATACAAGCT 416
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||
Sbjct 360 AGTTGTCCAGTTGGGACAGTCATTGTCAAAAGAATTATACTTGAAGATCTTATACGAGCT 419
Query 417 CAACGTTTGAAATCCTTAGGATTCAACTATCCAGGACAAATTTCTTCAAAGGACAAGAAA 476
||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||||||||
Sbjct 420 CAACGTTTGCAATCCTTACGATTCAACTATCCAGGACAAGTGTCTGCAAAGGACAAGAAA 479
Query 477 ATTGATTTAACGGGTCATCATTTTGCCACAATTAGTTACAAAGATTACCACTATGGAGCA 536
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ATTGATTTAACTGGTCATCATTTTGCCACAATTAGTTACAAAGATGACCACTATGGAGCA 539
Query 537 AAAGGAAACATTAACGTATGGAACCCAAATGTCTCACCTGATCAGTTTAGTCTTGCGGCT 596
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 540 AAAGGAAACATTAACGTATGGAATCCAAACGTCTCACCTGATCAATTTAGTCTTGCGGCT 599
Query 597 ATGACTGTCTCAGGCAACGAAGGGTTTCAAAGCATTTCTGCTGGATGGATTGTGTATCCA 656
||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGCTGTATCAGGCAACAAAGGATTTCAAAGCATTTCTGCTGGATGGATTGTGTATCCA 659
Query 657 GGGCTATATCACAATAATCAAAGTCGCTTATTCACTTACTGGACTGCGGATGGAAATAAT 716
|||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 660 GGGCTAAATCAGAATAATCAAAGTCACTTGTTCACTTACTGGACTGCGGATGGAAATAAT 719
Query 717 AAGACTCATTGCTACAATACACTATGTCCTGGGTTTGTACACGTGAGCACCAAGTATGCA 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 AAGACTCATTGCTACAATACACTACGTCCTGGGTTTGTACACGTGAGCACCAAGTATGCA 779
Query 777 ATTGGAATGCTTGTCCAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTC 836
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTGGAATGCTCGCCCAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTC 839
Query 837 AGCATATATCAGGATCATGTTACAGGAGACTGGTGGTTTGTGCTAAATAATGAGCCAATT 896
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 840 AGCATATATCAGGATCATGTTACAAGAGATTGGTGGTTTGTGCTAAATAACGAGCCAATT 899
Query 897 GGATATTGGCCAAAATCATTGTTCAAACCTCAAGGTTTAGCTGATGGAGCGAGTGCGGTG 956
||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 900 GGATACTGGCCAAAATCATTGTTCACACGTCAAGGTTTAGCTGATGGAGCGAGTGCCGTG 959
Query 957 TTTTGGGGAGGAGAAGTTTACAGTTCAGTGAAAGAAAAGAGTCCAAGCATGGGAAGTGGA 1016
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 960 TTTTGGGGAGGAGAAGTGTACAGTTCAGTGAAAGAGAAGAGCCCAAGCATGGGAAGTGGA 1019
Query 1017 CATTTCCCACAAGAGGGTTACAAGAAAGCAGCCTATGTGAATGGTTTTAAAATAATCACT 1076
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 CATTTCCCACAAGAGGGTTTCAAGAAAGCAGCCTATGTGAATGGTTTAAAAATAATCACT 1079
Query 1077 GATATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACAGTCGCA-GACAG 1135
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1080 GATATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACATTCGCAAG-CAG 1138
Query 1136 TCCAAACTGTTATAACGTG-AAGAAAATATTAGGTGTTGGTGAATATTGGTCAAGAGCTA 1194
||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 1139 TCCAAACTGTTATAATGTCCAA-AAAATATTAGGTGTTGGTGAATTTTGGTCAAGAGCTA 1197
Query 1195 TCTTATTTGGAGGACCTGGAGGATGCACATTTTAGTTAACTTAACTTAA 1243
| ||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 1198 TTTTATTTGGAGGACCTGGAGGATGCATATTTTAGTTTACTTGTCTTAA 1246
> AT4G23370.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF239, plant (InterPro:IPR004314);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G23360.1); Has 2365 Blast hits to 710 proteins
in 27 species: Archae - 0; Bacteria - 35; Metazoa - 0;
Fungi - 30; Plants - 2300; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:12206362-12213435 REVERSE LENGTH=3117
Length=3117
Score = 508 bits (275), Expect = 4e-143
Identities = 794/1036 (77%), Gaps = 70/1036 (7%)
Strand=Plus/Plus
Query 67 CAATGGCTCTCATTTTAGTTGGGGAGAGTCACA-AATCAGTTCC-TTCGGATGAGGAGGA 124
|||| ||||| ||| ||||| |||||| ||| || || || || ||| ||||||||
Sbjct 911 CAATAGCTCTAATTATAGTTACTGAGAGTTACAGAA-CAAAACCATT-GGAAGAGGAGGA 968
Query 125 AGAAGA-GATGGAGAAG-TTACTCAACTATCTCAATAAACCTGCAG-TCAAAAGTTTCCA 181
| || | | ||||| || |||||||||||| ||||||| |||| | |||| ||||| |
Sbjct 969 A-AACACGTTGGAG-AGTTTACTCAACTATATCAATAAGTCTGC-GATCAAGAGTTTTCG 1025
Query 182 AACTGAACCTGGTTATATATTGGATTGCATCGACATTCAAAAACAGTTAGCTTTTGATCA 241
||| ||| ||| ||| |||||||||||| |||||||| || ||| |||| ||| ||||
Sbjct 1026 GACTAAACATGGCGATACATTGGATTGCATAGACATTCACAAGCAGCTAGCCTTTAATCA 1085
Query 242 TCCTTTACTCA-AGAACCATTCTATTAAGTTGAAGCCCACAATTATACCTAAATGGACC- 299
|||| |||||| | |||||||| | | || |||| || | ||||||||||||||||
Sbjct 1086 TCCTCTACTCATA-AACCATTC---T-A-TT-CAGCCTACGACTATACCTAAATGGACCA 1138
Query 300 -AAA-GATAACAACACTTCTCATAAATCTAGTTCATTGCCATTTCGACAAGATGGCATAA 357
||| ||||||||| |||| | ||| | |||| || || ||| ||| |||||| ||||
Sbjct 1139 TAAATAATAACAACAATTCTGAGAAAGGTGGTTCCTTCCCGTTTAGACGAGATGGTATAA 1198
Query 358 GTTGTCCAGTTGGGACAGTCATTGTAAAAAGGATTATACTTGAAGATCTTATACAAGCTC 417
|||||||| |||| || || ||||| || |||| | ||| |||||||||||||||||||
Sbjct 1199 GTTGTCCACTTGGAACCGTGATTGTTAAGAGGACCACACTGGAAGATCTTATACAAGCTC 1258
Query 418 A-ACGTTTGAAATCCTTAGGATTCAACTATCCAGGACAAATTTCTTCAAAGGA-CAAGAA 475
| | ||||||||||| | || ||||| | | || || | |||||||||| || ||||||
Sbjct 1259 AGA-GTTTGAAATCCATGGGCTTCAAATCTTCAAGATATGTTTCTTCAAA-GAGCAAGAA 1316
Query 476 AATTGATTTAACGGGTCATCATTTTGC-CACAATTAGTTAC-AAAGATTACCACTATGGA 533
|||||| || | ||| |||||||||| | || ||| ||| ||| || ||||||
Sbjct 1317 CATTGATCTATCTGGTTATCATTTTGCTGTGGCTCAG-TACAAAAAATT-TCATTATGGA 1374
Query 534 GCAAAAGGAAA-CATTAACGTAT-GGAACCCAAATGTCTCACCTGATCAGTTTAGTCTTG 591
||||| ||||| | ||||| | | ||||||| || || |||||| |||| || |||||||
Sbjct 1375 GCAAAGGGAAATC-TTAACATCTGGGAACCCGAA-GTTTCACCTAATCAATTCAGTCTTG 1432
Query 592 C-GGCTATGAC--TGTCT-CAGG--C-AACGAAGGGTTTCAAAGCATTTCTGCTGGATGG 644
| | ||| || | ||| |||| | || ||| ||||||| ||||| |||||||||
Sbjct 1433 CAAG-TATCACTATCTCTGCAGGATCAAATGAACAGTTTCAAGGCATTAGAGCTGGATGG 1491
Query 645 ATTGTGTATCC-AGGGCTATATCACAATAATCAAAGTCGCTTATTCACTTACTGGACTGC 703
|| ||||| || | ||||| | |||| ||||| || ||||||| ||| || ||||| ||
Sbjct 1492 ATAGTGTA-CCAATGGCTA-A--ACAAGAATCACAGCCGCTTATACACATATTGGACAGC 1547
Query 704 GGATGGAAATAATAAGACTCATTGCTACAATACACTATGTCCTGGGTTTGTACACGTGAG 763
||||| ||| ||||| ||| ||||||||| |||||||||| |||||||| || ||
Sbjct 1548 AGATGGGTTTAACAAGACAGGTTGTTACAATACATTATGTCCTGGCTTTGTACAAGTAAG 1607
Query 764 CACCAAGTAT-GCAATTGGAAT-GCTTGTCCAACCAGTTTCCATTTATGATGGTC-AACA 820
||| | ||| || | || | ||| | ||||||||||||| ||| | ||| | ||||
Sbjct 1608 CACTGA-TATCCCACTAGG-TTACCTTCTTCAACCAGTTTCCACTTACGGTGG-CAAACA 1664
Query 821 ATATC-AACTA-GAAGTCAGCATATATCAGGATCATGTTACAGGAGACTGGTGGTTTGT- 877
||| | || || | | ||| ||| ||| |||||||| |||||||| | |||||||| ||
Sbjct 1665 ATA-CGAAGTAGGCA-TCAACATGTATAAGGATCATATTACAGGAAATTGGTGGTTGGTG 1722
Query 878 GC--TAAATAATGAGCCA-ATTGGATATTGGCCAAAATCATTGTTCAAACCTCAAGGTTT 934
|| | |||||| | | ||||||| ||||||||||||||||||| | | |||||
Sbjct 1723 GCGTTCAATAAT-AATTATGTTGGATACTGGCCAAAATCATTGTTCACAGATGTTGGTTT 1781
Query 935 A-GCTGATGGAGCG-AG-TGCGGTGTTTTGGGGAGGAGAAGTTTACAGTTCAGTGAAAGA 991
| || |||||| | || | || | |||||||||||||| || ||| ||||||||||
Sbjct 1782 AGGC-CATGGAG-GAAGCT-TGGCCTCATGGGGAGGAGAAGTATATAGTCCAGTGAAAGA 1838
Query 992 AAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAAGAGG---GTTACAAGAAAGCAGC 1048
|||||||||||||||||||||||||||||||||||| || |||||| ||||| |||
Sbjct 1839 GAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAACAGAAAAGTTACACGAAAGTAGC 1898
Query 1049 CTATGTGAATGGTTTT 1064
|||| |||||| ||||
Sbjct 1899 CTATATGAATGATTTT 1914
Score = 130 bits (70), Expect = 3e-29
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 982 CAGTGAAAGAAAAGAGTCCAAGCATGGGAAGTGGACATTTCCCACAAGAGGGTTACAAGA 1041
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 672 CAGTGAAAGAGAAGAGTCCAAGCAT-GGAAGTGGACATTTCCCACAAGAGGGTTTCAAGA 730
Query 1042 AAGCAGCCTATGTGAATGGTTTTAAAATAATC 1073
||||||||||||||| |||| || || |||||
Sbjct 731 AAGCAGCCTATGTGAGTGGTATTGAACTAATC 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5