BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492540
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23340.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1463 0.0
AT4G23364.1 | Symbols: | Pseudogene of AT4G23340; oxidoreducta... 532 2e-150
> AT4G23340.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:12195453-12196793
REVERSE LENGTH=1241
Length=1241
Score = 1463 bits (792), Expect = 0.0
Identities = 933/1002 (93%), Gaps = 5/1002 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAACTTCAATCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCGATTGAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTGAACTTCATTCTTCTCTGCAGCTTCCTGTGTTAGACTTAACACAACCAATTGAG 60
Query 61 TCCTCTGTTCTGTCTTCTCTCTCTGAAGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCTCTATACTGTCTTCTCTCTCTGAGGCTTGTAAAGAGTGGGGATTCTTCTATGTCACC 120
Query 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATCTGTTCCTTGTCCAGAGATGTTTTT 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AATCATGGAATCTCTAAAGAGATGTTCAGCAAAATTTGTTCCTTGTCCAGAGATGTTTTC 180
Query 181 AAAGTTCCTCTTGAATTAAAGCTCAAGCTTGGTCCCTTTTCATATACTCCTCGTTATATT 240
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||| || ||
Sbjct 181 AAAGCTCCTCTTGAATCAAAGCTCAAGCTTGGTCCCATTTCATATACTCCTCGGTACATC 240
Query 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCCGGTTCTGCCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 241 GCCTCTCCTTATTTCGAAAGCCTTGTTGTCTCTGGACCTGATTTCTCTGATTCTGCCAAA 300
Query 301 GCTTCTGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAA-AACTGCA 359
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 301 GCTTCAGCAGATGTTTTGTTCCAAGATCATCATAAACCAGAGTTAAGAGAAACAA-TGCA 359
Query 360 AGAATACGGAGCTAAAATGGCGGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAATACGGAGCTAAAATGGCAGAATTGTCCAAAAGACTCATAAAGATTCTCTTGATGAT 419
Query 420 AACCTTAGGAGACGAAACCGGGAAGATATTCTACCAAACTGAGTTTAGCAACTGTCATGG 479
|| |||||||| |||||||| |||| | ||||||||||||| |||||||||||||||||
Sbjct 420 GACTTTAGGAGATGAAACCGGAAAGAGACTCTACCAAACTGACTTTAGCAACTGTCATGG 479
Query 480 ATACTTAAGGCTAGTGAACTATACACCTCCACACGACGTAGAGAAGCAAAAAGAGCTCGT 539
||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 480 ATACTTAAGGCTAGTGAACTACACACCTCCACACGACGTGGAGAAGCAAGAAGAGCTCGT 539
Query 540 TGAAGGTCTCGGGATGCACACGGATATGAGCTGCATAACAATAGTCTATCAAGATTCAGT 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGAAGGTCTCGGGATGCACACTGATATGAGCTGCATAACAATAGTCTATCAAGATTCCGT 599
Query 600 TGGTGGACTTCAAATGAGATCTAAGGAAGGGAAATGGATCGATATAAATCCGTGTGAGGA 659
|||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||| | ||
Sbjct 600 TGGTGGGCTTCAGATGAGGTCTAAAGAAGGGAAATGGATCGATATAAACCCGTGCAACGA 659
Query 660 TCTCCTTGTCGTTAACATTGGAGATCTTATGCAAGCATGGAGTAACGGACGGCTGAGATC 719
| ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 660 TTTCCTTGTTGTTAATATTGGAGACCTTATGCAAGCATGGAGTAATGGACGGCTGAGATC 719
Query 720 GTCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCTGAACATCGAGTTGTATTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCT 779
Query 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCGCCAGAAGAAATCGTTGGG-GAGGGAAATT 838
|||||||||||||||||||||||||||||| || ||||||| || ||| ||||||||
Sbjct 780 CTGTTTTGAGGATGAGAAAGTGATACTTGCACCTCAAGAAATTGT-GGGTGAGGGAAAAC 838
Query 839 GCAGGAGCTACAAGTCTTTTAAGTGTTCGGACTATCTGAAGTTCAGACAGAGTAATGAAG 898
|| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||
Sbjct 839 AAAGAAGCTACAAGTCGTTTAAGTGTTCGGAGTACCTGAAGTTCAGACAGAGCAATGAAG 898
Query 899 TAGGAAAGTTTGAGAAGATTGGTTACACTGTTACAGACTTTGCTGGACTTACGCTGGCTC 958
||| ||||||||||||||||||| |||||| | ||||||||||||||| | ||||||||
Sbjct 899 AAGGGAAGTTTGAGAAGATTGGTTTCACTGTCAAAGACTTTGCTGGACTAAAGCTGGCTC 958
Query 959 AACCAGATGATCCTTAGAGACCAAACCGCGTGTTTCGGTTTA 1000
|||||||||||||||||||||||||| | |||||||||||||
Sbjct 959 AACCAGATGATCCTTAGAGACCAAACTG-GTGTTTCGGTTTA 999
Score = 274 bits (148), Expect = 1e-72
Identities = 195/215 (91%), Gaps = 13/215 (6%)
Strand=Plus/Plus
Query 999 TATTGTTGCGAGTGTTAACTAGTGGAATCCAAAGCTACTTTTGGATTTAGATTTTTGTAT 1058
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 1033 TATTGTTGCGAGTGTTAACTAGTGGAATCAAAAG---CTTTTGGATTT-GATTTTTGTAT 1088
Query 1059 T-AAAAATGTT-TGGAGTCTTTTCTATTACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1116
| ||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1089 TAAAAAATGTTCT-GAGT-TTTTCTATAACCATCTAAAGTAATGTTTCAGAGGTTTTTCG 1146
Query 1117 ACAAGTTTATTCAAAGTGGGAGTACTTGTCAA-GCTAAACATCATATGTATTCAGTTTCA 1175
||| ||||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 1147 ACATGTTTATTCAAAGTGGGAGTTTTTGTCAAAGCCAA-CATCATATGTATTCAGTTTCA 1205
Query 1176 ATTGTGAACAAAGAAGCATAAGACT-GACCCACAA 1209
|| |||||||||||||| ||||| | |||||||||
Sbjct 1206 AT-GTGAACAAAGAAGCGTAAGA-TAGACCCACAA 1238
> AT4G23364.1 | Symbols: | Pseudogene of AT4G23340; oxidoreductase,
2OG-Fe(II) oxygenase family protein | chr4:12205480-12205885
REVERSE LENGTH=406
Length=406
Score = 532 bits (288), Expect = 2e-150
Identities = 346/375 (92%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 439 GGGAAGATATTCTACCAAACTGAGTTTAGCAACTGTCATGGATACTTAAGGCTAGTGAAC 498
||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 29 GGGAAAAGATTCTACCAAAGTGTGTTTAGCAACTGTCATGGATACTTAAGGCTAGTGAAC 88
Query 499 TATACACCTCCACACGACGTAGAGAAGCAAAAAGAGCTCGTTGAAGGTCTCGGGATGCAC 558
|| ||||||||||||||||||||||||||| ||||||||||||||||||| | | |||
Sbjct 89 TACACACCTCCACACGACGTAGAGAAGCAAGAAGAGCTCGTTGAAGGTCTTTGAAAGCAT 148
Query 559 ACGGATATGAGCTGCATAACAATAGTCTATCAAGATTCAGTTGGTGGACTTCAAATGAGA 618
| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 149 AAGGATATGAGCTGCATAACAATAGTCTATCAAGATTCCGTTGGTGGGCTTCAAATGAGG 208
Query 619 TCTAAGGAAGGGAAATGGATCGATATAAATCCGTGTGAGGATCTCCTTGTCGTTAACATT 678
||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 209 TCTAAAGAAGGGAAATGGATCGATATAAATCCGTGTGAGGATCACCTTGTTGTTAACATT 268
Query 679 GGAGATCTTATGCAAGCATGGAGTAACGGACGGCTGAGATCGTCTGAACATCGAGTTGTA 738
|||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 269 GGAGATCTAATGCAAGCATGGAGTAACGGTCGGCTGCGATTGTCTGAACATCGAGTTGTA 328
Query 739 TTGAGAAAGTTGGTGAACAGAGTCTCTCTGGCGTTTTTTCTCTGTTTTGAGGATGAGAAA 798
||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct 329 TTGAGAAAGTTGGTGAACAGAGTCTCTCTATCGTTTCTTCTCTGTTTTGTGGGCAAGAAA 388
Query 799 GTGATACTTGCGCCA 813
|||||||||||||||
Sbjct 389 GTGATACTTGCGCCA 403
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 391 AAAAGACTCATAAAGATTCTCTTGATGA 418
||||||||||||||||||||||||||||
Sbjct 1 AAAAGACTCATAAAGATTCTCTTGATGA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5