BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492543
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23220.1 | Symbols: CRK14 | cysteine-rich RLK (RECEPTOR-like... 2820 0.0
AT4G23200.1 | Symbols: CRK12 | cysteine-rich RLK (RECEPTOR-like... 797 0.0
AT4G11490.1 | Symbols: CRK33 | cysteine-rich RLK (RECEPTOR-like... 418 1e-115
AT4G23190.1 | Symbols: CRK11, AT-RLK3 | cysteine-rich RLK (RECE... 339 1e-91
AT4G23205.1 | Symbols: | other RNA | chr4:12144243-12144958 RE... 99.0 2e-19
> AT4G23220.1 | Symbols: CRK14 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 14 | chr4:12153956-12157091 REVERSE LENGTH=2322
Length=2322
Score = 2820 bits (1527), Expect = 0.0
Identities = 1890/2062 (92%), Gaps = 37/2062 (2%)
Strand=Plus/Plus
Query 1 TTATTCATACTTGCTTGCTTTCCAAACCCAAATATCACCTGTA-TGATCTTGAAAATGAA 59
|||||||||||| |||||| ||| ||| |||||||| ||||| | |||||||||||| |
Sbjct 157 TTATTCATACTTACTTGCTGTCCTAACGTAAATATCATCTGTACT-ATCTTGAAAATGGA 215
Query 60 ATTGAAGAATCTCTTGCCAATTTTCTGGTTTGTCCTTGTAGGCTTTGCTGTTGTGTCTGC 119
||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 216 ATTGAAGAATCTCTTTCCAATCTTCTGGTTTGTCCTCGTAGGCTTTGCTGTGGTGTCTGC 275
Query 120 ACAAGAATGTGGCAAAACAGGGTCTTTTGTACCACATGGTAGGTATGACACAAACCGGGG 179
||||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 276 ACAAGAATGCGGCAAAACAGGGTTTTTTGTACCACAAAGTAGGTATGAAACAAACCGGGG 335
Query 180 CCTTATCCTCTCTTCTCTTCCTTCCAATGTTTCAGCTCGAGGCGGCTTCTACAATTCTTC 239
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 336 CCTTCTCCTCTCTTCTCTTCCTTCCAATGTTTCAGCTCGAGGAGGATTCTACAATTCTTC 395
Query 240 GATTGGCCAAGGACCTGATCGAGTGTATGCTTTGGGGATGTGCATTCAAGGTGCTGAACC 299
|||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 396 GATTGGCCAAGGCCCTGATCGAGTGTATGCTCTGGGGATGTGCATTGAAGGTGCTGAACC 455
Query 300 AGATGTATGCTCCAACTGTGTTGAATATGCGTCTAATCTGTTACTAAACGGGTGTCCCAA 359
|||||| |||||| ||||| |||||||||| |||||||||||| || || ||||| |||
Sbjct 456 AGATGTTTGCTCCGACTGTATTGAATATGCTTCTAATCTGTTATTAGACACGTGTCTCAA 515
Query 360 CCAGACAGAAGGGCTTGCTTGGCCGGA-AAGACGGATTTTATGTATGGTGCGATACTCTA 418
|||||||||||| || || |||||||| || ||||||||| |||||||| |||||||| |
Sbjct 516 CCAGACAGAAGGCCTGGCCTGGCCGGAGAA-ACGGATTTTGTGTATGGTACGATACTCCA 574
Query 419 ATAGTTCtttttttGGATCACTCAAGGCAGAACCGCATTTCTATATCCACAATC-AGGAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 575 ATAGTTCTTTTTTTGGATCACTCAAGGCAGAACCGCATTTCTATATCCACAA-CGTGGAT 633
Query 478 GATATCAGATCCAATTTAACAGAGTTTGATCAAGTGTGGGAAGAGTTAGCACGTCGTATG 537
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GATATTACATCCAATTTAACAGAGTTTGATCAAGTGTGGGAAGAGTTAGCACGTCGTATG 693
Query 538 ATAGCAAATACTACTTCACCATCATCTAAAAGCAAGTACTACGCAGCTGACATAGCAGCC 597
||||| | ||||||||| |||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 694 ATAGCTAGTACTACTTCTCCATCATCTAAACGCAAGTACTACGCAGCAGACGTAGCAGCC 753
Query 598 TTGACAGATTTCCAGATTATATATGCATTAATGCAATGCACTCCGGACTTATCTTTGGAG 657
||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 754 TTGACAGCTTTCCAGATAATATATGCACTAATGCAATGCACTCCGGACTTATCTTTGGAG 813
Query 658 GATTGCCATATCTGTTTAAGACAAAGTGTTGGTGACTATGAATCATGCTGCAATGGAAAG 717
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 814 GATTGCCATATCTGTTTAAGACAAAGTGTTGGTGACTATGAAACATGCTGCAATGGAAAG 873
Query 718 CAAGGTGGCATTGTGTACCGAGCCAGCTGCGTTTTTCGGTGGGAACTGTGGCCTTTCTCT 777
||||||||||||||||||||||||||||| ||||| |||||||| || | || ||||||
Sbjct 874 CAAGGTGGCATTGTGTACCGAGCCAGCTGTGTTTTCCGGTGGGAGCTTTTTCCCTTCTCT 933
Query 778 GAGGCTTTTAGTCGTATTTCGTTGGCACCTCCGCCTCCATCCCCAGTGATTCTCTCAC-C 836
||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||| |
Sbjct 934 GAGGCTTTTAGTCGTATTTCGTTGGCACCTCCGCCTCAATCCCCAGC-ATT-TCCCACGC 991
Query 837 T-CCGGCAGGCAACAAGACAAATACAACGACCAAGAAAGGTAGCATAACAATCTCAATAG 895
| ||||||| ||| ||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 992 TTCCGGCAGT-AAC----CAA-TACAGCGACCAAGAAAGGTAGCATAACAATCTCGATAG 1045
Query 896 GAATCATA-GGCGCAATCGTTATTCCTACTGTCATTATTATCTTCTTGGTACTGCTTGCG 954
|||| | || |||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1046 GAATTGTCTGG-GCAATCATTATTCCTACTGTCATTGTTGTCTTCTTGGTACTGCTTGCG 1104
Query 955 CTAGGATTTGTTGTTTATAGGAGGAGAAAATTATACCAAGGATCTAGTACTGATATCACC 1014
|||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||
Sbjct 1105 CTAGGATTTGTTGTTTATAGGAGGAGGAAATCATACCAAGGATCCAGCACTGATATCACC 1164
Query 1015 ATTACACACTCACTCCAATTCGATTTCAAAGCGATTGAAGATGCAACAAATAAATTCTTG 1074
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1165 ATTACACACTCACTGCAATTCGATTTCAAAGCGATTGAAGATGCAACAAATAAATTCTCG 1224
Query 1075 GAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTTCAAGGGTGTGCTTAACGGC 1134
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1225 GAGAGCAACATAATTGGTCGCGGTGGATTTGGAGAAGTTTTCATGGGTGTCCTTAACGGT 1284
Query 1135 ACAGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACAAGGTGCACGAGAGTTCAAG 1194
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1285 ACTGAAGTTGCAATTAAGAGGCTGTCAAAAGCATCGAGACAAGGTGCACGAGAATTCAAA 1344
Query 1195 AATGAGGTTGTTGTTGTTGCTAAACTCCAACATAGGAATCTTGTTAAGCTTCTCGGGTTT 1254
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1345 AATGAGGTTGTTGTTGTTGCAAAACTCCATCATAGGAATCTTGTTAAGCTTCTCGGGTTT 1404
Query 1255 TGTCTAGAAGGAGATGAGAAGATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGAT 1314
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TGTCTAGAAGGAGAAGAGAAAATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGAC 1464
Query 1315 TTCTTCCTCTTTGACCCTACCAAGCAAGGACAGTTAGACTGGAAAAAACGTTACAACATT 1374
| |||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||
Sbjct 1465 TACTTCCTCTTTGACCCTACAAAGCAAGGGCAGTTAGACTGGACTAAACGATACAACATT 1524
Query 1375 ATCCGGGGAATCACTCGAGGAATTCTATATCTCCATCAAGACTCACGGCTTACAATCATA 1434
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct 1525 ATCCGGGGAATCACTCGAGGAATTCTGTATCTTCATCAAGACTCACGGCTCACGATCATA 1584
Query 1435 CATCGTGACCTCAAAGCCAGCAATATTCTCCTAGATGCTGATATGAATCCAAAAATTGCT 1494
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1585 CATCGTGACCTCAAAGCCAGCAACATTCTCCTAGATGCAGATATGAACCCAAAAATTGCT 1644
Query 1495 GATTTTGGAATGGCTAGAATTTTTGGGATCGATCAAAGTGGAGCTAATACaaaaaaaaTA 1554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GATTTTGGAATGGCGAGAATTTTTGGGATCGATCAAAGTGGAGCTAATACAAAAAAAATA 1704
Query 1555 GTTGGGACACGCGGTTACATGCCTCCAGAATATGTGATGCATGGCCTA-TTCTCAACAAA 1613
| ||||||||||||||||||||||||||||||||||| ||| || | | ||||||||||
Sbjct 1705 GCTGGGACACGCGGTTACATGCCTCCAGAATATGTGAGGCAAGGTC-AGTTCTCAACAAG 1763
Query 1614 ATCTGATGTCTATAGTTTTGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAG 1673
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 ATCAGATGTTTATAGTTTCGGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAACAG 1823
Query 1674 ATTCGTCCACCAGTCAGACACCACAGTTGAGAATTTGGTGACATACGCTTGGAGGTCGTG 1733
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1824 ATTCATCCACCAGTCAGACACTACAGTTGAGAATTTGGTCACATACGCTTGGAGGTTGTG 1883
Query 1734 GAGAAACGGCTCACCATTGGAAATGGTGGATCCAACCATTTCAGAGAATTGTGACACCGA 1793
|||||||| |||||||| ||| | ||||||||||||||||| ||||||||||| |||||
Sbjct 1884 GAGAAACGATTCACCATTAGAACTCGTGGATCCAACCATTTCGGAGAATTGTGAAACCGA 1943
Query 1794 AGAAGTGACAAGATGCATCCACATTGCACTGCTATGTGTTCAACACAATCCCACAGATCG 1853
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1944 AGAAGTGACAAGATGCATCCACATTGCGTTGCTGTGTGTTCAACACAATCCCACAGATCG 2003
Query 1854 TCCCAGCTTGTCGACAATCTACATGATGCTCACTAAT-AATTCCCATATTCTACCTGATC 1912
|||||||||||||||||| |||||||||||| ||| ||||| || || |||||||||
Sbjct 2004 CCCCAGCTTGTCGACAATCAACATGATGCTCA-TAAACAATTCGTATGTTTTACCTGATC 2062
Query 1913 CTCAACAACCTGGATTCTACTTTCCAGATAA-AAGCAACCAAGAACAAGATGGCATCGAG 1971
|||||||||||||||||| ||||||| |||| |||||||||||||| ||||||| ||||
Sbjct 2063 CTCAACAACCTGGATTCTTCTTTCCA-ATAATAAGCAACCAAGAACGAGATGGCCTCGAC 2121
Query 1972 TCTAGCCAGTCTACGAACAAGTCCAATTCC-CAAACTATCAATGATGTAACCATTACAGA 2030
|||| | ||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 2122 TCTA-----T----GAACAGGTCCAAT-CCACAAACTATCAATGATGTAACCATTACAGA 2171
Query 2031 TCTTGAACCTCGTT-AAGCTTG 2051
| |||||||||||| ||| |||
Sbjct 2172 TTTTGAACCTCGTTGAAG-TTG 2192
Score = 370 bits (200), Expect = 4e-101
Identities = 295/337 (88%), Gaps = 21/337 (6%)
Strand=Plus/Plus
Query 2047 GCTTGGAGGTTGTGGAGAAACGGGTCACTACTAGAACTCGTGGATCCAATCATTTCAGAG 2106
|||||||||||||||||||||| |||| | |||||||||||||||||| |||||| |||
Sbjct 1870 GCTTGGAGGTTGTGGAGAAACGATTCACCATTAGAACTCGTGGATCCAACCATTTCGGAG 1929
Query 2107 AATTGTGAAACTGAAGAAGTGACAAGATGCATCCACATTGCGCTGCTATGTGTTCAACAC 2166
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1930 AATTGTGAAACCGAAGAAGTGACAAGATGCATCCACATTGCGTTGCTGTGTGTTCAACAC 1989
Query 2167 AATCCCACAGATCGCCCCAGCTTGTCGACAATCCACATGATGTTCACTCA-CAATTCCCT 2225
||||||||||||||||||||||||||||||||| |||||||| ||| | | |||||| |
Sbjct 1990 AATCCCACAGATCGCCCCAGCTTGTCGACAATCAACATGATGCTCA-TAAACAATTCG-T 2047
Query 2226 TTATTT-ACCTGATCCTCAACAACCTGGATTTTTCTTTCCAA-A-TAGACGCAACCAAGA 2282
| ||| |||||||||||||||||||||||| |||||||||| | || | ||||||||||
Sbjct 2048 ATGTTTTACCTGATCCTCAACAACCTGGATTCTTCTTTCCAATAATA-A-GCAACCAAGA 2105
Query 2283 ACGAGATGGCCTCGATTTTAGCCAGTCTACGAACCGGTCCAATTCC-CAAACTATCAATG 2341
||||||||||||||| | |||| |||| |||||||| || |||||||||||||
Sbjct 2106 ACGAGATGGCCTCGA------C---TCTATGAACAGGTCCAAT-CCACAAACTATCAATG 2155
Query 2342 ATGTAACCATTACAGAGCTTT-ATCCTCGTTGAGGTT 2377
|||||||||||||||| ||| | ||||||||| |||
Sbjct 2156 ATGTAACCATTACAGAT-TTTGAACCTCGTTGAAGTT 2191
> AT4G23200.1 | Symbols: CRK12 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 12 | chr4:12145380-12147934 REVERSE LENGTH=1947
Length=1947
Score = 797 bits (431), Expect = 0.0
Identities = 842/1036 (81%), Gaps = 45/1036 (4%)
Strand=Plus/Plus
Query 1030 CAATTCGATTTCAAAG-CGATTGAAGATGCAACAAATAAATTCTTGGAGAG-C-AACATA 1086
||| ||||||| ||| | ||||||| |||||| | ||||| ||| | || | |||| |
Sbjct 934 CAACTCGATTT-TAAGACAATTGAAGTTGCAACTGA-AAATT-TTGCAAAGACTAACA-A 989
Query 1087 -ATTGGTCGCGGTGGATTTGGAGAAGTTTTCAAGGG--TG-T-GCTTAACGGCACAGAAG 1141
| |||| ||||||||||||||||||| |||||| | | | |||| || |||||||
Sbjct 990 GCTAGGTCAAGGTGGATTTGGAGAAGTTTACAAGGGCACGTTAG-TTAATGGAACAGAAG 1048
Query 1142 TTGCAATTAAGAGGCTGTC-AAAAGCAT-CGAGACAAGGTGCACGAGAGTTCAAGAATGA 1199
||||| | |||||||| || |||| ||| ||| ||||||||||| |||||||||||| ||
Sbjct 1049 TTGCAGTGAAGAGGCTATCGAAAA-CATCCGA-ACAAGGTGCACAAGAGTTCAAGAACGA 1106
Query 1200 GGTTGTTGTTGTTGCTAAACTCCAACATAGGAATCTTGTTAAGCTTCTCGGGTTTTGTCT 1259
||||||| |||| || ||||| || ||||||||||||||||||||||| |||| |||||
Sbjct 1107 GGTTGTTCTTGTCGCCAAACTTCAGCATAGGAATCTTGTTAAGCTTCTTGGGTACTGTCT 1166
Query 1260 AGAAGGAGATGAGAAGATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGATTTCTT 1319
||| ||| ||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct 1167 GGAACCAGAGGAGAAAATACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTAGACTACTT 1226
Query 1320 CCTCTTTGACCCTACCAAGCAAGGACAGTTAGACTGGAAAAAACGTTACAACATTATCCG 1379
||| ||||| ||||| |||||||| ||||||||||||| |||||| |||||||||||| |
Sbjct 1227 CCTTTTTGATCCTACAAAGCAAGGGCAGTTAGACTGGACAAAACGATACAACATTATC-G 1285
Query 1380 G-GGAATCACTCGAGGAATTCTATATCTCCATCAAGACTCACGGCTTACAATCATACATC 1438
| |||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| |
Sbjct 1286 GAGGAATCACTCGAGGAATTCTATATCTTCATCAAGATTCACGACTAACAATCATACACC 1345
Query 1439 GTGACCTCAAAGCCAGCAATATTCTCCTAGATGCTGATATGAATCCA-AAAATTGCTGAT 1497
|||| |||||||||||||| ||||| |||||||| ||||||| ||| ||||| ||||||
Sbjct 1346 GTGATCTCAAAGCCAGCAACATTCTTCTAGATGCCGATATGA-TCCCGAAAATCGCTGAT 1404
Query 1498 TTTGGAATGGCTAGAATTTTTGGGATCGATCAAAGTGGAGCTAATACaaaaaaaaTAGTT 1557
||||||||||| || || | ||| || || ||||||| |||||| ||||||| |||| |
Sbjct 1405 TTTGGAATGGCGAGGATATCTGGAATAGACCAAAGTGTAGCTAACACAAAAAGGATAGCT 1464
Query 1558 GGGACACGCGGTTACATGCCTCCAGAATATGTGATGCATGGCCTA-TTCTCAACAAAATC 1616
|| || ||||||||||||||||||||| ||||| ||||||| | ||||| | |||||
Sbjct 1465 GGAACTTTCGGTTACATGCCTCCAGAATACGTGATCCATGGCC-AGTTCTCGATGAAATC 1523
Query 1617 TGATGTCTATAGTTTTGGAGTCTT-AGTTCTTGAGATTATATGTGGTCGA-AATAACAGA 1674
|||||||||||| || || || || | ||||||||||||||||||| | | || || |||
Sbjct 1524 TGATGTCTATAGCTTCGGTGTTTTGA-TTCTTGAGATTATATGTGG-CAAGAAGAATAGA 1581
Query 1675 TTCGTCCACCA-GTCAGACACCACAGTTGAGAATTTGGTGACATACGCTTGGAGGTCGTG 1733
| | |||| | |||| || | || ||| |||||||| || || | |||||||| |||
Sbjct 1582 AGCTTTTACCAAG-CAGATACTAAAGCTGAAAATTTGGTCACCTATGTTTGGAGGTTGTG 1640
Query 1734 GAGAAACGGCTCACCATTGGAAATGGTGGATCCAACCATTTCAGAGAATTGTGACACCGA 1793
|| |||||| |||||||| || | ||||||| |||||| |||||||||||| | || ||
Sbjct 1641 GACAAACGGATCACCATTAGAGCTCGTGGATCTAACCATATCAGAGAATTGTCAAACAGA 1700
Query 1794 AGAAGTGACAAGATGCATCCACATTGCACTGCTATGTGTTCAACACA-ATCCCACAGATC 1852
|||||| | ||||||||||||||| ||||| |||||||||||| | | |||| | |||||
Sbjct 1701 AGAAGTTATAAGATGCATCCACATCGCACTCCTATGTGTTCAAGA-AGATCCTAAAGATC 1759
Query 1853 GTCCCAGCTTGTCGACAATC-TACATGATGCTCACTAATAATTCCCAT-ATTCTACCTGA 1910
|||||| |||||| |||||| | |||||||||||||| | ||||| | ||| || |||
Sbjct 1760 GTCCCAACTTGTCAACAATCATG-ATGATGCTCACTAACAGTTCCC-TCATTTTATCTGT 1817
Query 1911 TCCTCAACAACCTGGATTCTACT-TTCCAGATAAAAGCAACCAAGAACAAGATGGCATCG 1969
|||||||| ||||||||||| | |||| | |||| ||| | |||| ||| || |
Sbjct 1818 TCCTCAACCACCTGGATTCTT-TGTTCC-GC-AAAA-CAA--A-GAACGTGATAGCTTTT 1870
Query 1970 AGTCTAGCCAGTCTACGAACAAG-TCCAATTCCCAAACTATCAATGATGTAACCATTACA 2028
||| ||||| | ||| || | | | ||| || |||| ||||||||||||||||||
Sbjct 1871 TGTCGAGCCAATTTAC-AATGGGATGTACTTCTCAGACTAAAAATGATGTAACCATTACA 1929
Query 2029 GATCTTGAACCTCGTT 2044
|||| || |||||||
Sbjct 1930 AATCTAGATCCTCGTT 1945
> AT4G11490.1 | Symbols: CRK33 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 33 | chr4:6978848-6981548 FORWARD LENGTH=1911
Length=1911
Score = 418 bits (226), Expect = 1e-115
Identities = 668/876 (76%), Gaps = 51/876 (6%)
Strand=Plus/Plus
Query 1048 ATTGAAGATGCAACAAATAAATTCTT-GGAGAGCAACATAATTGGTCGCGGTGGATTTGG 1106
||||||| ||||||| || || || || ||||||| |||||| |||||||||||
Sbjct 940 ATTGAAGCTGCAACATGTACCTT-TTCAAAGTGCAACATGCTTGGTCAAGGTGGATTTGG 998
Query 1107 AGAAGTTTTCAAGGGTGTGCTT-AA--CGGCA-CAGAAGTTGCAATTAAGAGGCTGTCAA 1162
|||||||||||||||||||||| || ||| | ||||| ||||| | |||||||||||||
Sbjct 999 AGAAGTTTTCAAGGGTGTGCTTCAAGACGG-ATCAGAAATTGCAGTGAAGAGGCTGTCAA 1057
Query 1163 AAGCATCGAGA-CAAGGTGCACGAGAGTTCAAGAATGAGGTT-GTTGTTGTTGCTAAA-C 1219
||| ||| || ||||||| || ||||||| |||||||| | || | || || ||| |
Sbjct 1058 AAGAATC-AGCTCAAGGTGTACAAGAGTTCCAGAATGAGACTAGTC-TCGTGGC-AAAGC 1114
Query 1220 TCCAACATAGGAATCTTG-TTA-AGCTTCTCGGGTTTTGTCTAGAAGGAGATGAGAAGAT 1277
| || || || ||| ||| || || |||||||||||||| | |||||||| || |||||
Sbjct 1115 TTCAGCACAGAAAT-TTGGTTGGAG-TTCTCGGGTTTTGTATGGAAGGAGAAGAAAAGAT 1172
Query 1278 ACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGATTTCTTCCTCTTTGACCCTACCAA 1337
||| || ||||| ||||| |||||||| |||||||| ||| | ||||| ||||| ||
Sbjct 1173 ACTCGTATACGAATTTGTTCCCAACAAAAGCCTCGACCAGTTCTTGTTTGAACCTACAAA 1232
Query 1338 GCAAGGACAGTTAGACTGGAAAAAACGTTACAACATTATCCGG-GGAA-TCACTCGAGGA 1395
| |||| || | || ||| ||||| ||||| ||||| | |||| | || |||||
Sbjct 1233 GAAAGGCCAACTGGATTGGGCGAAACGGTACAAGATTATT-GTTGGAACTG-CTAGAGGA 1290
Query 1396 ATTCTATATCTCCATCAAGACTCACGGCTTACAATCATACATCGTGACCTCAAAGCCAGC 1455
||||||||||| ||||| ||||||| || | ||||||||| |||||||||||||| ||
Sbjct 1291 ATTCTATATCTTCATCATGACTCACCCCTCAAAATCATACACCGTGACCTCAAAGCTAGT 1350
Query 1456 AATATTCTCCTAGATGCTGATATG-AATCCAAAAATTGCTGATTTTGGAATGGCTAGAAT 1514
|| || ||| |||||||||| ||| || ||||| | || |||||||||||||| |||||
Sbjct 1351 AACATCCTCTTAGATGCTGAAATGGAACCCAAAG-TCGCAGATTTTGGAATGGCAAGAAT 1409
Query 1515 TTTT-GGGATCGATCAAAGTGGAGCTAATACaaaaaaaaTAGTTGGGACACGCGGTTACA 1573
|||| ||| | |||||| | |||| |||||| || ||||||| || | || ||||
Sbjct 1410 TTTTAGGG-TGGATCAATCTCGAGCGGATACAAGAAGGGTAGTTGGAACCCATGGCTACA 1468
Query 1574 TGCCTCCAGAATATGTGATGCATGGCCTA-TTCTCAACAAAATCTGATGTCTATAGTTTT 1632
| ||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1469 TATCTCCAGAGTATTTGATGCATGGCC-AGTTCTCGGTGAAATCTGATGTCTATAGTTTT 1527
Query 1633 GGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAA-CAG-ATTCGTCCACCAGTCAG 1690
|||||||| ||||||||||||||| |||| ||| || ||| | | |||| | | |
Sbjct 1528 GGAGTCTTGGTTCTTGAGATTATAAGTGGAA-AAAGAAACAGCAA-CTTCCATGAAACTG 1585
Query 1691 AC-AC-CACAGTTGAGAATTTGGTGACATACGCTTGGAGGTCGT-GGAGAAACGGCTCAC 1747
| | | | | |||||||||| ||||| ||||||||| | | |||||||||| ||||
Sbjct 1586 ATGAATC-CGGAA-AGAATTTGGTCACATATGCTTGGAGG-CATTGGAGAAACGGATCAC 1642
Query 1748 CATTGGAAATGGTGGATCCA-ACCATTTCAGAGAATTGTGACACCGAA-GAAGTGA-CAA 1804
|||| || | |||||| || | | | | |||||| | | | || ||||| ||
Sbjct 1643 CATTAGAGCTTGTGGATTCAGAAC-TCGAAAAGAATTATCAGAGT-AATGAAGTCTTCA- 1699
Query 1805 GATGCATCCACATTGCACTGCTATGTGTTCAACACAATCCC-A-CAGATCGTCCCAGCTT 1862
|||||||||| || || || ||||||||||| | |||| | || | ||||| | ||
Sbjct 1700 GATGCATCCATATCGCGCTATTATGTGTTCAAAATGATCCAGAACA-A-CGTCCGAATTT 1757
Query 1863 GTCGACAATC-TACATGATGCTCACTAA-TAATTCC 1896
|| || ||| | |||||||||||| || ||| |||
Sbjct 1758 ATCTACTATCAT-CATGATGCTCAC-AAGTAACTCC 1791
> AT4G23190.1 | Symbols: CRK11, AT-RLK3 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 11 | chr4:12141032-12143833 REVERSE
LENGTH=2292
Length=2292
Score = 339 bits (183), Expect = 1e-91
Identities = 624/830 (75%), Gaps = 57/830 (7%)
Strand=Plus/Plus
Query 1096 GGTGGATTTGGAGAAGTTTTCAAGGGTGTGC--T-TAACGGCACAGAAGTTGCAATTAAG 1152
|||||||| || | |||| ||||||| || | |||||| || || || || | |||
Sbjct 1198 GGTGGATTCGGTGCGGTTTACAAGGGTAAGCTTTCTAACGGAACTGATGTAGCTGTGAAG 1257
Query 1153 AGGCTGTC--AAAAGCATCGA-GACAAGGTGCACGAGAGTTCAAGAATGAGGTTGTTGTT 1209
| ||||| ||||| || | ||||||| || | ||||||| ||| |||| |||| ||
Sbjct 1258 CGACTGTCGAAAAAG--TC-AGGACAAGGCACAAGGGAGTTCAGGAACGAGGCTGTTCTT 1314
Query 1210 GTTG-CTAAACTCCAACATAGGAATCTTGTTAAG-CTTCTCGGGTTTTGTCTAGAAGGAG 1267
| || | ||||| |||||||||||||| ||| || ||||| || || ||| | ||| |||
Sbjct 1315 G-TGACAAAACTTCAACATAGGAATCTGGTT-AGACTTCTTGGATTCTGTTTGGAAAGAG 1372
Query 1268 ATGAGA-AGATACTTG-TTTACGAGTTTGTCCCCAACAAGAGCCTCGATTTCTTCCTCTT 1325
| || | |||| | || | || || ||||||| |||||| ||||| || | ||| || ||
Sbjct 1373 AGGA-ACAGATTC-TGATCTATGAATTTGTCCACAACAAAAGCCTTGACTACTTTCT-TT 1429
Query 1326 T-GACCC-TACCAAGCAAGGACAGTTAGACTGGAAAAAACGTTACAACATTATCCGG-GG 1382
| ||||| | |||||| | ||| ||||||||| || ||||| || || || ||
Sbjct 1430 TCGACCCGGA-AAAGCAAAGTCAGCTAGACTGGACCCGGCGATACAAGATCAT-TGGAGG 1487
Query 1383 AATCACTCGAGGAATTCTATATCTCCATCAAGACTCACGGCTTACAATCATACATCGTGA 1442
||| ||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||
Sbjct 1488 AATTGCTCGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATACATCGTGA 1547
Query 1443 CCTCAAAGCCAGCAATATTCTCCTAGATGCTGATATGAATCCAAAAATTGCTGATTTTGG 1502
||||||||||||||| |||||| ||||||| || ||||| ||||||||||| ||||||||
Sbjct 1548 CCTCAAAGCCAGCAACATTCTCTTAGATGCAGACATGAACCCAAAAATTGCAGATTTTGG 1607
Query 1503 AATGGCTAGAATTTTTGG-GATCGATCAAAGTGGAGCTAATACaaaaaaaaTAGTTGGGA 1561
| |||| | |||||||| | | || |||| | || || || || | ||| | ||| |
Sbjct 1608 ATTGGCAACTATTTTTGGAG-TGGAGCAAACTCAAGGAAACACGAACAGAATTGCTGGAA 1666
Query 1562 C--ACGCGGTTACATGCCTCCAGAATATGTGATGCATGGCCTATTCTCAACAAAATCTGA 1619
| |||| ||||||| |||| || |||| ||||||||| | || ||| | ||||||||
Sbjct 1667 CCTACGC--TTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCTGA 1724
Query 1620 TGTCTATAGTTTTGGAGTCTTAGTTCTTGAGATTATATGTGGTC--GAAATAACAGATTC 1677
| ||||| ||||||||||||||||||||||||||| | || | |||| ||||| |
Sbjct 1725 CATTTATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGG-CAAGAAA-AACAGCGGC 1782
Query 1678 GTCCACCAG-TC-A-GACACCAC-AGTTG-AG-AAT-TTGGTGACATACGCTTGGAGGTC 1730
||| ||||| | | || || | | | | || || ||||| || || |||| |||| |
Sbjct 1783 GTCTACCAGATGGATGAAACTAGTACT-GCAGGAAACTTGGTCACTTATGCTTCGAGG-C 1840
Query 1731 GT-GGAGAAACG-GCTCACCATTGGAAATGGTGGATCCAACCATTTCAGA-G-AATTGTG 1786
| |||||||| | |||||||| || ||||||||||||| ||| || | |||| |
Sbjct 1841 TTTGGAGAAACAAG-TCACCATTAGAGCTGGTGGATCCAACT-TTTG-GAAGGAATTATC 1897
Query 1787 ACACCGAA-GAAGTGACAAGATGCATCCACATTGCACTGCTATGTGTTCAACACAATCCC 1845
| | || ||||| || || |||||||| || || ||| ||||||||||| | |||||
Sbjct 1898 AGAGT-AATGAAGTCACTAGGTGCATCCATATCGCGCTGTTATGTGTTCAAGAAAATCC- 1955
Query 1846 ACA-GATCGTCCCA-GCTTGTCGACAATC-TACATGATGCTCACTAATAA 1892
| | || ||||| | | || || |||||| | | | ||||| |||| |||
Sbjct 1956 AGAAGACCGTCCAATG-TTATCAACAATCAT-CTTAATGCTGACTAGTAA 2003
> AT4G23205.1 | Symbols: | other RNA | chr4:12144243-12144958
REVERSE LENGTH=490
Length=490
Score = 99.0 bits (53), Expect = 2e-19
Identities = 70/78 (90%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 1971 GTCTAGCCAGTCTACGAACAAGTCCAATTCCCAAACTATCAATGATGTAACCATTACAGA 2030
||| ||||||||| | |||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 227 GTCGAGCCAGTCTGCAAACAGGCCCACTTCCCAAACTATCAATGATGTAACCATTACAGA 286
Query 2031 TCTTGAACCTCGTT-AAG 2047
||| |||||||||| |||
Sbjct 287 TCTGGAACCTCGTTGAAG 304
Score = 84.2 bits (45), Expect = 5e-15
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2302 AGCCAGTCTACGAACCGGTCCAATTCCCAAACTATCAATGATGTAACCATTACAGAGCTT 2361
||||||||| | ||| || ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 231 AGCCAGTCTGCAAACAGGCCCACTTCCCAAACTATCAATGATGTAACCATTACAGATCTG 290
Query 2362 TATCCTCGTTGA 2373
| |||||||||
Sbjct 291 GAACCTCGTTGA 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119627898735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5