BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492552
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA | g... 2979 0.0
> AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA |
glutamate-cysteine ligase | chr4:12103161-12107299 REVERSE
LENGTH=2055
Length=2055
Score = 2979 bits (1613), Expect = 0.0
Identities = 1800/1886 (95%), Gaps = 29/1886 (2%)
Strand=Plus/Plus
Query 1 AGCTCAACTGATCGGCTCATGCT---C---TC-AC--TCTTTC--TTTTTTATCAATTTT 49
||||| ||||||||||||||||| | || || |||||| ||||||||| | |||
Sbjct 1 AGCTCCACTGATCGGCTCATGCTCCACTGATCAACTTTCTTTCATTTTTTTATC-AGTTT 59
Query 50 CTCA-TT-TCTCTCAGTCGCATATAAA-TTGAAACCGCCGATTCGTTTTTGCTC-TTAAG 105
|||| || ||||||||||||||||||| |||||| ||||||||||||||||||| |||||
Sbjct 60 CTCATTTCTCTCTCAGTCGCATATAAATTTGAAA-CGCCGATTCGTTTTTGCTCTTTAAG 118
Query 106 CTTTCTTCTTCTTTATTTCGACGGTGTCTCTCAATCTCCGTCAAGGTTGACGACTTTCAG 165
| | |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 119 C--T-TTCTTCTTGATTTCGACGGTGTCTCTCAATCTCCGTCAAGCTTGACGAATTTCAG 175
Query 166 GAGCTATATAGACCATGGCGCTCTTGTCACAAGCAGGAGGATCATACACTGTTGTCCCTT 225
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 176 GAGCTATATATACCATGGCGCTCTTGTCTCAAGCAGGAGGATCATACACTGTTGTTCCTT 235
Query 226 -TGG-G-ATGTTCAAAGACTGGAACTAAAGC---AGTTTCTGGTGGTGTGAGGAATTTGG 279
||| | ||||||||| ||||||||||||| ||||| ||||| |||||||||||||
Sbjct 236 CTGGAGTTTGTTCAAAGGCTGGAACTAAAGCTGTTGTTTCGGGTGGCGTGAGGAATTTGG 295
Query 280 ATGTGTTGAGGATGAAAGAAGCTTTTGTTAGCTCCTACTCTAGGAGTCTATCTACAAAAT 339
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 296 ATGTTTTGAGGATGAAAGAAGCTTTTGGTAGCTCCTACTCTAGGAGTCTATCTACCAAAT 355
Query 340 CAATGCTTCTCCATTCTGTTAAGAGGAGCAAGAGAGGGCATCAATTGATTGTTGCGGCTA 399
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 356 CAATGCTTCTCCATTCTGTTAAGAGGAGTAAGAGAGGGCATCAATTGATTGTTGCGGCAA 415
Query 400 GCCCGCCAACGGAAGAGGCTGTAGTTGCTACTGAGCCGTTGACGAGAGAGGATCTCATTG 459
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 GTCCTCCAACGGAAGAGGCTGTAGTTGCAACTGAGCCGTTGACGAGAGAGGATCTCATTG 475
Query 460 CGTATCTTGCCTCTGGATGCAAAACTAAGGACAAATATAGAATAGGTACAGAACATGAGA 519
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 CCTATCTTGCCTCTGGATGCAAAACAAAGGACAAATATAGAATAGGTACAGAACATGAGA 535
Query 520 AATTTGGTTTTGAGGTCAATACTTTGCGTCCTATGAAGTATGAGCAAATAGCTGAGCTGC 579
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 536 AATTTGGTTTTGAGGTCAATACTTTGCGCCCTATGAAGTATGATCAAATAGCCGAGCTTC 595
Query 580 TTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAGTAATGGAAGGTGACAAGATCATTG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAGTAATGGAAGGTGACAAGATCATTG 655
Query 640 GTCTGAAGCAGGGAAAGCAAAGCATTTCACTGGAACCTGGGGGTCAATTCGAGCTTAGTG 699
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 656 GTCTGAAGCAGGGAAAGCAAAGCATTTCACTTGAACCTGGGGGTCAGTTCGAGCTTAGTG 715
Query 700 GTGCACCTCTTGAGACTTTGCACCAAACTTGTGCTGAAGTCAATTCACATCTTTATCAGG 759
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 716 GTGCACCTCTTGAGACTTTGCATCAAACTTGTGCTGAAGTCAATTCACATCTTTATCAGG 775
Query 760 TAAAAGCTGTTGCTGAGGAAATGGGAATTGGTTTCTTAGGAATCGGCTTCCAGCCCAAAT 819
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 TAAAAGCAGTTGCTGAGGAAATGGGAATTGGTTTCTTAGGAATTGGCTTCCAGCCCAAAT 835
Query 820 GGCGTCGGGAGGATATACCCATCATGCCAAAGGGGAGATACGACATTATGAGAAACTACA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGCGTCGGGAGGATATACCCATCATGCCAAAGGGGAGATACGACATTATGAGAAACTACA 895
Query 880 TGCCGAAAGTTGGCACCCTTGGACTTGATATGATGCTCCGAACGTGTACTGTTCAGGTTA 939
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 TGCCGAAAGTTGGTACCCTTGGTCTTGATATGATGCTCCGAACGTGTACTGTTCAGGTTA 955
Query 940 ATCTGGATTTTAGCACAGAAGCTGATATGATCAGGAAGTTCCGTGCTGGTCTTGCTTTGC 999
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 956 ATCTGGATTTTAGCTCAGAAGCTGATATGATCAGGAAGTTTCGTGCTGGTCTTGCTTTAC 1015
Query 1000 AACCTATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGAT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AACCTATAGCAACGGCTCTATTTGCGAATTCCCCTTTTACAGAAGGAAAGCCAAACGGAT 1075
Query 1060 TTCTCAGCATGAGAAGCCACATATGGACAGACACTGACAAGGACCGCACAGGAATGCTAC 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTCTCAGCATGAGAAGCCACATATGGACAGACACTGACAAGGACCGCACAGGAATGCTAC 1135
Query 1120 CGTTTGTTTTCGATGACTCTTTTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCC 1179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CATTTGTTTTCGATGACTCTTTTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCC 1195
Query 1180 CTATGTACTTTGCCTACCGAAAGAACAAATACATCGACTGTACTGGAATGACATTTAGGC 1239
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1196 CTATGTACTTTGCCTACAGAAAGAACAAATACATCGACTGTACTGGAATGACATTTCGGC 1255
Query 1240 AATTCTTGGCTGGAAAACTTCCCTGTCTCCCTGGTGAACTGCCTTCATATAACGATTGGG 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1256 AATTCTTGGCTGGAAAACTTCCCTGTCTCCCTGGTGAACTGCCTTCATATAATGATTGGG 1315
Query 1300 AAAACCATCTGACAACAATATTCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAAACCATCTGACAACAATATTCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAG 1375
Query 1360 GTGCTGATGGAGGTCCCTGGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTAT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GTGCTGATGGAGGTCCCTGGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTAT 1435
Query 1420 TATATGATGATGATAGTCTCCAAGCTATCCTGGATCTGACAGCTGACTGGACTCCAGCAG 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TATATGATGATGATAGTCTCCAAGCTATCCTGGATCTGACAGCTGACTGGACTCCAGCAG 1495
Query 1480 AGAGAGAGATGCTAAGGAACAAAGTTCCAGTTACTGGCTTAAAGACGCCGTTTAGAGATG 1539
||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||
Sbjct 1496 AGAGAGAGATGCTAAGGAACAAAGTCCCAGTTACTGGCTTAAAGACTCCTTTTAGGGATG 1555
Query 1540 GTTTGTTAAAGCATGTCGCTGAAGATGTCCTGAAACTCGCAAAGGATGGTTTAGAGCGCA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTTTGTTAAAGCATGTCGCTGAAGATGTCCTGAAACTCGCAAAGGATGGTTTAGAGCGCA 1615
Query 1600 GAGGCTACAAGGAAGCCGGTTTCTTGAACGCAGTTGATGAAGTGGTCAGGACAGGAGTTA 1659
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1616 GAGGCTACAAGGAAGCCGGTTTCTTGAACGCAGTCGATGAAGTGGTCAGAACAGGAGTTA 1675
Query 1660 CGCCTGCGGAGAAGCTCTTGGAGATGTACAATGGAGAATGGGGACAAAGCGTAGATCCCG 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CGCCTGCGGAGAAGCTCTTGGAGATGTACAATGGAGAATGGGGACAAAGCGTAGATCCCG 1735
Query 1720 TGTTCGAAGAACTGCTATACTAAGAGAATGGGAAGTGAACAAAAGGTGTCTATAAACCTT 1779
|||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1736 TGTTCGAAGAGCTGCTGTACTAAGAAAATGGGACGTGAACAAAAGGTGTCTATAAACCTT 1795
Query 1780 TGGGTGTGAGTTGATGCTATCTGAAGAACTCAAGTCTCAGGAATAAGtttttttttttCT 1839
|||||||||||| ||||||||||||||| || |||||| |||||||| ||||||||| |
Sbjct 1796 TGGGTGTGAGTTTATGCTATCTGAAGAATTCGAGTCTCCGGAATAAGGATTTTTTTTT-T 1854
Query 1840 T-TCTGTAATCGGATTTTAAAAACTG 1864
| | ||||||||||||||||||||||
Sbjct 1855 TGT-TGTAATCGGATTTTAAAAACTG 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5