BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492556 Length=1206 Score E Sequences producing significant alignments: (Bits) Value AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1676 0.0 AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1188 0.0 AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239) ... 388 5e-107 > AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239) | chr4:6362189-6365079 FORWARD LENGTH=1203 Length=1203 Score = 1676 bits (907), Expect = 0.0 Identities = 1113/1212 (92%), Gaps = 15/1212 (1%) Strand=Plus/Plus Query 1 ATGAAAATGAAATTGGGGTGTGCATTTCGAGTGATGTGCATGATTTTGGCATGTTATATT 60 |||||||||||||||||||||||| ||| | ||| |||||||||||||||||| |||||| Sbjct 1 ATGAAAATGAAATTGGGGTGTGCACTTCCAATGACGTGCATGATTTTGGCATGCTATATT 60 Query 61 ATATGTTGTAGCCTTCTAATGAGTCATTGCCATGGCGTTGTAGAAGAAACAAAGACATTA 120 || ||| | |||||||||||||||||||||||||| ||| || ||||| ||||||||||| Sbjct 61 ATTTGTGGGAGCCTTCTAATGAGTCATTGCCATGGTGTTATAAAAGAAGCAAAGACATTA 120 Query 121 AAAAGTAAAGAAGATCTTGAAATAGAGCAAAAAATTAAGCTTATCAACAAACCCGCCGTT 180 |||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || || Sbjct 121 AAAAGTAATGAAGATCTTGAAATAGAGCACAAACTTAAGCTTATCAACAAACCTGCATTT 180 Query 181 AAAATCATAAAGTCTATTAATGGTGAACGGTATGGGTGCGTGGATTTCTACAAACAACCA 240 |||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 181 AAAATCGTAAAGACTATTAATGGTGAACGATATGGGTGTGTGGATTTCTACAAACAACCA 240 Query 241 GGACTTGACCATC-CATCCATGAAGAACCACACATTTCACTATAAGATGCGTATGTCACA 299 ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 241 GGACTTGACCA-CTCATCCATGAAGAACCACACATTTCACCATAAGATGCGTATGTCATA 299 Query 300 CCTC-GAACGATCAAAAATGAAAAGAGAA-ACACATAGTAACAAAACATTTGGTTACTTT 357 ||| ||| ||||||||||||||||| || |||||||| |||| ||||||||| ||||| Sbjct 300 -CTCTGAAGGATCAAAAATGAAAAGA-AAGACACATAGAAACACAACATTTGGCCACTTT 357 Query 358 TGGGAGAATGGTGTAGGTTGTCCTATTGGTACCGTTCCTATACTTCGAGTCACTAAAGAT 417 ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 358 TGGGAGAATGGCGTAGGTTGTCCCATTGGTACCGTTCCTATACCTCGAGTCACTAAAGAC 417 Query 418 GCTCTTTTGAAAATAAAATCCATCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGGGC 477 |||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| || Sbjct 418 GCTCTTTTGAGAATGAAATCCTTCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGAGC 477 Query 478 AAAACCTACAAACCTACATCTTCTATTGATAATCATCATTTTGCTGTGGTGCGTACTACT 537 |||||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||| Sbjct 478 AAAACCTATAAACCTGCATCTTCTATTGACGATCATCATTTTGCTGTGGTGCGAACTACT 537 Query 538 AAAGGGAAACCAAAGAGTTATAATGGTGCGTCTATGAATATTAATACATTCATTCCTTCG 597 ||| || || | | |||||| |||||||| |||||||||||||||||||||| |||||| Sbjct 538 AAA-GG-AA-CTAGGAGTTACAATGGTGCATCTATGAATATTAATACATTCACTCCTTCA 594 Query 598 GTTGGACCTATGCAATTCAGTGCTAGTCGGATGCATTTTCAAATTGGAAATGAATTCATC 657 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 595 GTTGGACCTATGCAATTCAGCGCTTCTCGGATGCATTTTCAAATTGGAAATGAATTCATC 654 Query 658 CAAGTTGGTTGGATCGTACACCCGCAATTATACCATGACTTCAACTCTCGGCTATTCGTA 717 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 655 CAAGTTGGTTGGATCGTACACCCACAATTATACCATGACTTCAACTCTCGGATATTCGTA 714 Query 718 TTTACAAA-TGCGGGAGGACATGAGTGTTATAATCTCTTCTGTCCGGACGGATCCGGAAT 776 |||||||| | |||||||| ||| ||||||||||||||||||||| |||||||||||||| Sbjct 715 TTTACAAAAT-CGGGAGGAAATGCGTGTTATAATCTCTTCTGTCCTGACGGATCCGGAAT 773 Query 777 GATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTGCCGAACAAAAAAGTATTGACTT 836 |||||||||| || |||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 774 GATACTAGTTCGTCAAGACTTAACTCCTGGTCTACTTGCCGAGCAAAAAAGTATTGACTT 833 Query 837 TGCTATAATGAAGGATAAAATCAATGGAAATTGGTGGTTGTTGATGGGCACCTCCTGGGA 896 || ||||||||||| |||||||| || |||||||||||||||||||| || || ||||| Sbjct 834 CGCCATAATGAAGGACAAAATCAACGGGAATTGGTGGTTGTTGATGGGTACATCTTGGGA 893 Query 897 AGAAATTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA-GAGTAGAAT 955 |||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||| Sbjct 894 AGAAGTTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAATG-GTCGAAT 952 Query 956 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGCAATAGTCATTATC 1015 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 953 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGGAATAGTCATTATC 1012 Query 1016 CGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGATCACGACTGTGGACGAAAATT 1075 ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1013 CGAAGGGGAGCCCCAAAGTAGACTCATATGTCCGTTTAATTACGACTGTGGACGAAAATT 1072 Query 1076 ATAATACTGACAAAACTGTGAAAAACACTGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1135 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1073 ATAATACTGACAAAACAGTGAAAAACACAGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1132 Query 1136 GAGATGCAACAGAGACATTTTTTA-CACATGTAGGTCATCTTATTATTTATGGAGGCCCT 1194 |||||||||| ||||| |||| | | ||||| |||||||||||||| |||||||||||| Sbjct 1133 GAGATGCAACGGAGACGTTTTGGAGC-CATGTCGGTCATCTTATTATATATGGAGGCCCT 1191 Query 1195 GGATGTAAATAA 1206 || ||||||||| Sbjct 1192 GGGTGTAAATAA 1203 > AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239) | chr4:6357052-6360377 FORWARD LENGTH=1337 Length=1337 Score = 1188 bits (643), Expect = 0.0 Identities = 1045/1235 (85%), Gaps = 44/1235 (4%) Strand=Plus/Plus Query 1 ATGAAAATGAAATTGGGGTGTGCATTTCGAGTGATGTGCATGATTTTG-GCATGTTATAT 59 ||||||||||||||||| | | || ||| ||||||||||||||||||| | || ||||| Sbjct 35 ATGAAAATGAAATTGGGATATTCACTTCCAGTGATGTGCATGATTTTGTTC-TGCTATAT 93 Query 60 TATATGTTGTAGCCTTCTAATGAGTCATTGCCATGGCGTTGTAGAAGAAACAAAGACATT 119 | |||||||||||||| | ||||||||||| |||||||||||||||| | ||||| |||| Sbjct 94 TCTATGTTGTAGCCTTTTGATGAGTCATTGTCATGGCGTTGTAGAAGCAGCAAAGGCATT 153 Query 120 AAAAAGTAAAGAAGATCTTGAAATAGAGCAAAAAATTAAGCTTATCAACAAACCCGCCGT 179 |||||| || |||||||||||||||||||||||| || ||||||||||||||| | || Sbjct 154 AAAAAGCAATGAAGATCTTGAAATAGAGCAAAAACTTGAGCTTATCAACAAACATACGGT 213 Query 180 TAAAATCATAAAGTCTATTAATGGTGAACGGTATGGGTGCGTGGATTTCTACAAACAACC 239 |||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||| Sbjct 214 TAAAATCATAAAGTGTACTAATGGTGAACGATATGGGTGTGTGGATTTCTACAAACAACC 273 Query 240 AGGACTTGACCA-TCCATCCATGAAGAACCACACATTTCACTATAAGATGCGT---ATGT 295 |||||||||||| || || ||||||||||||||||||||| ||||||||||| |||| Sbjct 274 AGGACTTGACCACTC-ATTGATGAAGAACCACACATTTCACCATAAGATGCGTTTGATGT 332 Query 296 CACACCTCGAACGATCAAAAATGAAAAGAGAAACACATAGTAACAAAACATTTGGTTACT 355 || ||| |||| |||||||||| |||| | | ||||||| |||||||||||||||| ||| Sbjct 333 CATACCCCGAAGGATCAAAAATTAAAAAACAGACACATATTAACAAAACATTTGGTCACT 392 Query 356 TTTGGGAGAATGGTGTAGGTTGTCCTATTGGTACCGTTCCTATACTTCGAGTCA-CTAAA 414 ||||| ||||||| |||||| ||||||||||||| |||||||||||| ||||| | ||| Sbjct 393 TTTGGAAGAATGGCGTAGGTCGTCCTATTGGTACAGTTCCTATACTTTTAGTCAGC-AAA 451 Query 415 GATGCTCTTTTGAAAATAAAATCCATCGATAGCGATAATTCTAATCCGCAAAGTTCGTGG 474 || |||||||||||||| ||||| | ||| | |||||||||||||| |||||||||||| Sbjct 452 GAAGCTCTTTTGAAAATGAAATCTTTTGATGGTGATAATTCTAATCCCCAAAGTTCGTGG 511 Query 475 GGCAAAACCTACAAACCTACATCTTCTATTG-ATAATCATCATTTTGCTGTGGTGCGTAC 533 | |||||||| |||||||| ||||||| || | |||||||||||||||||||||||| Sbjct 512 AGTAAAACCTATAAACCTACGTCTTCTAATGGAGG-TCATCATTTTGCTGTGGTGCGTAC 570 Query 534 TACTAAAGGGAAACCAAAGAGTTATAATGGTGCGTCTATGAATATTAATACATTCATTCC 593 ||| ||||| ||||||| ||| |||||||| | | ||||||| |||||| |||||| ||| Sbjct 571 TACGAAAGGAAAACCAAGGAGATATAATGGAGTGGCTATGAACATTAATTCATTCAATCC 630 Query 594 TTCGGTTGGACCTATGCAATTCAGTGCTAGTCGGATGCATTTTCAAATTGGAAATGAATT 653 | | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 631 TCCAGTTGGACCTATGGAATTCAGTGCTGGTCGGATGCATTTTCAAATTGGAAATGAATT 690 Query 654 CATCCAAGTTGGTTGGATCGTACACCCGCAATTATACCATGACTTCAACTCTCGGCTATT 713 | ||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||| || Sbjct 691 CGTCCAAGTTGGTTGGACCGTACACCCACAATTATATCACGACTTCAACTCACGGCTGTT 750 Query 714 CGTATTTACAAATGCGGGAGGACATGAGTGTTATAATCTCTTCTGTCCGGACGGATCCGG 773 | ||| ||| ||| | |||||||||| ||||||||||| ||| ||||||| ||||||||| Sbjct 751 CATATATACTAATTCAGGAGGACATGGGTGTTATAATCCCTTATGTCCGGTCGGATCCGG 810 Query 774 AATGATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTGCCGAA-CAAAAAAGTATT- 831 ||| |||||||| ||| | || ||||||||||| ||||| || || || || | ||| Sbjct 811 AATAATACTAGTCAGTCATGAAGTTACTCCTGGTTTACTTACC-AAGCACAAC-G-ATTT 867 Query 832 -GA-CTTTGCTATAATGAAGGATAAAATCA-ATGGAAATTGGTGG-TTGTTGATGGG--- 884 || || | | ||||| ||||| ||||| | | || |||||||| || |||||||| Sbjct 868 CGAACTCTCC-ATAATTAAGGACAAAAT-ATACGGGCATTGGTGGCTT-TTGATGGGTAA 924 Query 885 CA----C--CTC--CTGGGAA-GAAATTGGGTTTTGGCCATCA-AGCAGATTCAAAGAAA 934 || | ||| || |||| ||||||||||| |||||| || | || |||||||||| Sbjct 925 CAGTAGCAGCTCAACTTGGAAAGAAATTGGGTTCTGGCCAACACAT-AGGTTCAAAGAAA 983 Query 935 GTTCTGGTACAAGAGTAGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTC 994 ||| ||||||| | || ||||||||||||||||||||||||||| || || ||| ||||| Sbjct 984 GTTTTGGTACAGGTGTCGAATGGGGTGGTGAAGTCTATAGCCCTGCGTCTACAAGTCCTC 1043 Query 995 CAATGGGCAATAGTCATTATCCGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGA 1054 | ||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 1044 CTATGGGTAATAGTCATTTTCCGAAGGGGAGCCCCAAAATAGACTCATATGTCCGTTTGA 1103 Query 1055 TCACGACTGTGG-ACGAAAATTATAATACTG-ACAAAACTGTGAAAAACACTGAGAGGTA 1112 |||||||| ||| ||||||||||| | || ||| |||||||||||| ||||| | Sbjct 1104 TCACGACT-TGGGACGAAAATTATGGTT-TGGACATGGTTGTGAAAAACACAGAGAGATT 1161 Query 1113 TTCAGACAGTTGTTATAAAGTGAGAGATGCAACAGAGACATTTTTTACACATGTAGGTCA 1172 |||| |||||||||||||||||| ||||||| ||||| | |||| || |||||||||| Sbjct 1162 TTCAAACAGTTGTTATAAAGTGAAAGATGCA-CAGAGTCGTTTTGGCCAGATGTAGGTCA 1220 Query 1173 TCTTATTATTTATGGAGGCCCT-GGATGTAAATAA 1206 |||||| ||||||||||||| || |||| |||| Sbjct 1221 TCTTATCGTTTATGGAGGCCCCAGG-TGTACATAA 1254 > AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239) | chr4:12096786-12098888 FORWARD LENGTH=819 Length=819 Score = 388 bits (210), Expect = 5e-107 Identities = 402/490 (82%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 726 TGCGGGAGGACATGAGTGTTATAAT-CTCTTCTGTCCGGACGGATCCGGAATGATACTAG 784 ||| ||||||| || |||||||||| | ||| |||||||| |||| |||||||||||||| Sbjct 243 TGCAGGAGGACGTGCGTGTTATAATAC-CTTATGTCCGGATGGATTCGGAATGATACTAG 301 Query 785 TTA-GTGAAGATTTTACTCCTGGTCTACTTGCCGAACAAAAAAGTA-TT-GACTTTGCTA 841 || || ||||| ||| |||||| | |||| |||| | | | || | || ||||||| | Sbjct 302 -TAGGTCAAGATCTTATTCCTGGACGACTTACCGAGC-ACAGAG-ATTTAAACTTTGCCA 358 Query 842 TAATGAAGGATAAA-ATCAATGGAAATTGGTGGTTGTTGATGGGCAC---C---TCCTGG 894 |||| ||||| ||| | ||| ||||||||||||||||||||||| || | | ||| Sbjct 359 TAATCAAGGACAAAGA-CAACGGAAATTGGTGGTTGTTGATGGGTACTGGCATATTATGG 417 Query 895 GAAGAAATTGGGT-TTTGGCCATC-AAGCAGATTCAAAGAAAGTTCTGGTACAAGAG-TA 951 ||| ||||| ||| | |||||| | ||| || ||||||||||||| |||||| |||| | Sbjct 418 GAAAAAATT-GGTGTCTGGCCAGCAAAG-AGGTTCAAAGAAAGTTTTGGTAC-AGAGATC 474 Query 952 GAATGGGGTGGTGAAGTCTATAGCCCTTCG-CCTCCAAATCCTCCAATGGGCAATAGTCA 1010 |||||||||||||||||| ||||||||||| || |||| |||||| ||||| ||||| || Sbjct 475 GAATGGGGTGGTGAAGTCCATAGCCCTTCGTCC-CCAAGTCCTCCGATGGGTAATAGCCA 533 Query 1011 TTATCCGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGATCACGACTGTGG-ACG 1069 |||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||| ||| Sbjct 534 TTATCCGAAGGGGACCCCCAGACTAGACTCATATGTCCGTTTGATCACGACT-TGGGACG 592 Query 1070 AAAATTATAATACTGACAAAACTGTGAAAAACACTGAGAGGTATTCAGACAGTTGTTATA 1129 ||||||||||| | ||||| |||||||||||| ||||| ||||||||| ||||||||| Sbjct 593 AAAATTATAATGCCGACAATTTTGTGAAAAACACAGAGAGATATTCAGACGGTTGTTATA 652 Query 1130 AAGTGAGAGATGCAACAGAGA--CATT-TT-TT--ACACATGTAGGTCATCTTATTATTT 1183 ||||| ||||| ||| | | | || || || | | ||||||| ||||||||| ||| Sbjct 653 AAGTGGGAGATACAATATATATGCAAGATTCTTGGAGAAATGTAGGACATCTTATTGTTT 712 Query 1184 ATGGAGGCCC 1193 |||||||||| Sbjct 713 ATGGAGGCCC 722 Score = 239 bits (129), Expect = 5e-62 Identities = 196/228 (86%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 446 GCGATAATTCTAATCCGCAAAGTTCGTGGGGCAAAACCTACAAACCTACATCTTCT-ATT 504 ||||||||| ||||||||||||||||||| ||||||| || ||| |||| |||||| || Sbjct 17 GCGATAATTATAATCCGCAAAGTTCGTGGAGCAAAACATATAAATCTACGTCTTCTAATG 76 Query 505 GATAATCATCATTTTGCTGTGGTGCGTACTAC-TAAAGGGAAACCAAAGAGTTATAATGG 563 || |||||||||||||||| |||| ||| | ||||| ||| ||| | |||| ||||| Sbjct 77 GA-CGTCATCATTTTGCTGTGTTGCGGACT-CTTAAAGAAAAAACAAGGCGTTACAATGG 134 Query 564 TGCGTCTATGAATATTAATACATTCATTCCTTCGGTTGGACCTATGCAATTCAG-TGCTA 622 |||| |||||||| |||| |||||| ||||| ||||||||||| ||| ||||| | ||| Sbjct 135 AGCGTATATGAATACTAATGCATTCAATCCTTTGGTTGGACCTACGCAGTTCAGCT-CTA 193 Query 623 GTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTGGA 670 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 194 CTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTGGA 241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59236643100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5