BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492556
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1676 0.0
AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1188 0.0
AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239) ... 388 5e-107
> AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:6362189-6365079 FORWARD LENGTH=1203
Length=1203
Score = 1676 bits (907), Expect = 0.0
Identities = 1113/1212 (92%), Gaps = 15/1212 (1%)
Strand=Plus/Plus
Query 1 ATGAAAATGAAATTGGGGTGTGCATTTCGAGTGATGTGCATGATTTTGGCATGTTATATT 60
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||| ||||||
Sbjct 1 ATGAAAATGAAATTGGGGTGTGCACTTCCAATGACGTGCATGATTTTGGCATGCTATATT 60
Query 61 ATATGTTGTAGCCTTCTAATGAGTCATTGCCATGGCGTTGTAGAAGAAACAAAGACATTA 120
|| ||| | |||||||||||||||||||||||||| ||| || ||||| |||||||||||
Sbjct 61 ATTTGTGGGAGCCTTCTAATGAGTCATTGCCATGGTGTTATAAAAGAAGCAAAGACATTA 120
Query 121 AAAAGTAAAGAAGATCTTGAAATAGAGCAAAAAATTAAGCTTATCAACAAACCCGCCGTT 180
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||
Sbjct 121 AAAAGTAATGAAGATCTTGAAATAGAGCACAAACTTAAGCTTATCAACAAACCTGCATTT 180
Query 181 AAAATCATAAAGTCTATTAATGGTGAACGGTATGGGTGCGTGGATTTCTACAAACAACCA 240
|||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 181 AAAATCGTAAAGACTATTAATGGTGAACGATATGGGTGTGTGGATTTCTACAAACAACCA 240
Query 241 GGACTTGACCATC-CATCCATGAAGAACCACACATTTCACTATAAGATGCGTATGTCACA 299
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 241 GGACTTGACCA-CTCATCCATGAAGAACCACACATTTCACCATAAGATGCGTATGTCATA 299
Query 300 CCTC-GAACGATCAAAAATGAAAAGAGAA-ACACATAGTAACAAAACATTTGGTTACTTT 357
||| ||| ||||||||||||||||| || |||||||| |||| ||||||||| |||||
Sbjct 300 -CTCTGAAGGATCAAAAATGAAAAGA-AAGACACATAGAAACACAACATTTGGCCACTTT 357
Query 358 TGGGAGAATGGTGTAGGTTGTCCTATTGGTACCGTTCCTATACTTCGAGTCACTAAAGAT 417
||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 358 TGGGAGAATGGCGTAGGTTGTCCCATTGGTACCGTTCCTATACCTCGAGTCACTAAAGAC 417
Query 418 GCTCTTTTGAAAATAAAATCCATCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGGGC 477
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 418 GCTCTTTTGAGAATGAAATCCTTCGATAGCGATAATTCTAATCCGCAAAGTTCGTGGAGC 477
Query 478 AAAACCTACAAACCTACATCTTCTATTGATAATCATCATTTTGCTGTGGTGCGTACTACT 537
|||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 478 AAAACCTATAAACCTGCATCTTCTATTGACGATCATCATTTTGCTGTGGTGCGAACTACT 537
Query 538 AAAGGGAAACCAAAGAGTTATAATGGTGCGTCTATGAATATTAATACATTCATTCCTTCG 597
||| || || | | |||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct 538 AAA-GG-AA-CTAGGAGTTACAATGGTGCATCTATGAATATTAATACATTCACTCCTTCA 594
Query 598 GTTGGACCTATGCAATTCAGTGCTAGTCGGATGCATTTTCAAATTGGAAATGAATTCATC 657
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 595 GTTGGACCTATGCAATTCAGCGCTTCTCGGATGCATTTTCAAATTGGAAATGAATTCATC 654
Query 658 CAAGTTGGTTGGATCGTACACCCGCAATTATACCATGACTTCAACTCTCGGCTATTCGTA 717
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 655 CAAGTTGGTTGGATCGTACACCCACAATTATACCATGACTTCAACTCTCGGATATTCGTA 714
Query 718 TTTACAAA-TGCGGGAGGACATGAGTGTTATAATCTCTTCTGTCCGGACGGATCCGGAAT 776
|||||||| | |||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 715 TTTACAAAAT-CGGGAGGAAATGCGTGTTATAATCTCTTCTGTCCTGACGGATCCGGAAT 773
Query 777 GATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTGCCGAACAAAAAAGTATTGACTT 836
|||||||||| || |||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 774 GATACTAGTTCGTCAAGACTTAACTCCTGGTCTACTTGCCGAGCAAAAAAGTATTGACTT 833
Query 837 TGCTATAATGAAGGATAAAATCAATGGAAATTGGTGGTTGTTGATGGGCACCTCCTGGGA 896
|| ||||||||||| |||||||| || |||||||||||||||||||| || || |||||
Sbjct 834 CGCCATAATGAAGGACAAAATCAACGGGAATTGGTGGTTGTTGATGGGTACATCTTGGGA 893
Query 897 AGAAATTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA-GAGTAGAAT 955
|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 894 AGAAGTTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAATG-GTCGAAT 952
Query 956 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGCAATAGTCATTATC 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 953 GGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGGAATAGTCATTATC 1012
Query 1016 CGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGATCACGACTGTGGACGAAAATT 1075
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1013 CGAAGGGGAGCCCCAAAGTAGACTCATATGTCCGTTTAATTACGACTGTGGACGAAAATT 1072
Query 1076 ATAATACTGACAAAACTGTGAAAAACACTGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1135
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1073 ATAATACTGACAAAACAGTGAAAAACACAGAGAGGTATTCAGACAGTTGTTATAAAGTGA 1132
Query 1136 GAGATGCAACAGAGACATTTTTTA-CACATGTAGGTCATCTTATTATTTATGGAGGCCCT 1194
|||||||||| ||||| |||| | | ||||| |||||||||||||| ||||||||||||
Sbjct 1133 GAGATGCAACGGAGACGTTTTGGAGC-CATGTCGGTCATCTTATTATATATGGAGGCCCT 1191
Query 1195 GGATGTAAATAA 1206
|| |||||||||
Sbjct 1192 GGGTGTAAATAA 1203
> AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:6357052-6360377 FORWARD LENGTH=1337
Length=1337
Score = 1188 bits (643), Expect = 0.0
Identities = 1045/1235 (85%), Gaps = 44/1235 (4%)
Strand=Plus/Plus
Query 1 ATGAAAATGAAATTGGGGTGTGCATTTCGAGTGATGTGCATGATTTTG-GCATGTTATAT 59
||||||||||||||||| | | || ||| ||||||||||||||||||| | || |||||
Sbjct 35 ATGAAAATGAAATTGGGATATTCACTTCCAGTGATGTGCATGATTTTGTTC-TGCTATAT 93
Query 60 TATATGTTGTAGCCTTCTAATGAGTCATTGCCATGGCGTTGTAGAAGAAACAAAGACATT 119
| |||||||||||||| | ||||||||||| |||||||||||||||| | ||||| ||||
Sbjct 94 TCTATGTTGTAGCCTTTTGATGAGTCATTGTCATGGCGTTGTAGAAGCAGCAAAGGCATT 153
Query 120 AAAAAGTAAAGAAGATCTTGAAATAGAGCAAAAAATTAAGCTTATCAACAAACCCGCCGT 179
|||||| || |||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 154 AAAAAGCAATGAAGATCTTGAAATAGAGCAAAAACTTGAGCTTATCAACAAACATACGGT 213
Query 180 TAAAATCATAAAGTCTATTAATGGTGAACGGTATGGGTGCGTGGATTTCTACAAACAACC 239
|||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 214 TAAAATCATAAAGTGTACTAATGGTGAACGATATGGGTGTGTGGATTTCTACAAACAACC 273
Query 240 AGGACTTGACCA-TCCATCCATGAAGAACCACACATTTCACTATAAGATGCGT---ATGT 295
|||||||||||| || || ||||||||||||||||||||| ||||||||||| ||||
Sbjct 274 AGGACTTGACCACTC-ATTGATGAAGAACCACACATTTCACCATAAGATGCGTTTGATGT 332
Query 296 CACACCTCGAACGATCAAAAATGAAAAGAGAAACACATAGTAACAAAACATTTGGTTACT 355
|| ||| |||| |||||||||| |||| | | ||||||| |||||||||||||||| |||
Sbjct 333 CATACCCCGAAGGATCAAAAATTAAAAAACAGACACATATTAACAAAACATTTGGTCACT 392
Query 356 TTTGGGAGAATGGTGTAGGTTGTCCTATTGGTACCGTTCCTATACTTCGAGTCA-CTAAA 414
||||| ||||||| |||||| ||||||||||||| |||||||||||| ||||| | |||
Sbjct 393 TTTGGAAGAATGGCGTAGGTCGTCCTATTGGTACAGTTCCTATACTTTTAGTCAGC-AAA 451
Query 415 GATGCTCTTTTGAAAATAAAATCCATCGATAGCGATAATTCTAATCCGCAAAGTTCGTGG 474
|| |||||||||||||| ||||| | ||| | |||||||||||||| ||||||||||||
Sbjct 452 GAAGCTCTTTTGAAAATGAAATCTTTTGATGGTGATAATTCTAATCCCCAAAGTTCGTGG 511
Query 475 GGCAAAACCTACAAACCTACATCTTCTATTG-ATAATCATCATTTTGCTGTGGTGCGTAC 533
| |||||||| |||||||| ||||||| || | ||||||||||||||||||||||||
Sbjct 512 AGTAAAACCTATAAACCTACGTCTTCTAATGGAGG-TCATCATTTTGCTGTGGTGCGTAC 570
Query 534 TACTAAAGGGAAACCAAAGAGTTATAATGGTGCGTCTATGAATATTAATACATTCATTCC 593
||| ||||| ||||||| ||| |||||||| | | ||||||| |||||| |||||| |||
Sbjct 571 TACGAAAGGAAAACCAAGGAGATATAATGGAGTGGCTATGAACATTAATTCATTCAATCC 630
Query 594 TTCGGTTGGACCTATGCAATTCAGTGCTAGTCGGATGCATTTTCAAATTGGAAATGAATT 653
| | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 TCCAGTTGGACCTATGGAATTCAGTGCTGGTCGGATGCATTTTCAAATTGGAAATGAATT 690
Query 654 CATCCAAGTTGGTTGGATCGTACACCCGCAATTATACCATGACTTCAACTCTCGGCTATT 713
| ||||||||||||||| ||||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 691 CGTCCAAGTTGGTTGGACCGTACACCCACAATTATATCACGACTTCAACTCACGGCTGTT 750
Query 714 CGTATTTACAAATGCGGGAGGACATGAGTGTTATAATCTCTTCTGTCCGGACGGATCCGG 773
| ||| ||| ||| | |||||||||| ||||||||||| ||| ||||||| |||||||||
Sbjct 751 CATATATACTAATTCAGGAGGACATGGGTGTTATAATCCCTTATGTCCGGTCGGATCCGG 810
Query 774 AATGATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTGCCGAA-CAAAAAAGTATT- 831
||| |||||||| ||| | || ||||||||||| ||||| || || || || | |||
Sbjct 811 AATAATACTAGTCAGTCATGAAGTTACTCCTGGTTTACTTACC-AAGCACAAC-G-ATTT 867
Query 832 -GA-CTTTGCTATAATGAAGGATAAAATCA-ATGGAAATTGGTGG-TTGTTGATGGG--- 884
|| || | | ||||| ||||| ||||| | | || |||||||| || ||||||||
Sbjct 868 CGAACTCTCC-ATAATTAAGGACAAAAT-ATACGGGCATTGGTGGCTT-TTGATGGGTAA 924
Query 885 CA----C--CTC--CTGGGAA-GAAATTGGGTTTTGGCCATCA-AGCAGATTCAAAGAAA 934
|| | ||| || |||| ||||||||||| |||||| || | || ||||||||||
Sbjct 925 CAGTAGCAGCTCAACTTGGAAAGAAATTGGGTTCTGGCCAACACAT-AGGTTCAAAGAAA 983
Query 935 GTTCTGGTACAAGAGTAGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTC 994
||| ||||||| | || ||||||||||||||||||||||||||| || || ||| |||||
Sbjct 984 GTTTTGGTACAGGTGTCGAATGGGGTGGTGAAGTCTATAGCCCTGCGTCTACAAGTCCTC 1043
Query 995 CAATGGGCAATAGTCATTATCCGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGA 1054
| ||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1044 CTATGGGTAATAGTCATTTTCCGAAGGGGAGCCCCAAAATAGACTCATATGTCCGTTTGA 1103
Query 1055 TCACGACTGTGG-ACGAAAATTATAATACTG-ACAAAACTGTGAAAAACACTGAGAGGTA 1112
|||||||| ||| ||||||||||| | || ||| |||||||||||| ||||| |
Sbjct 1104 TCACGACT-TGGGACGAAAATTATGGTT-TGGACATGGTTGTGAAAAACACAGAGAGATT 1161
Query 1113 TTCAGACAGTTGTTATAAAGTGAGAGATGCAACAGAGACATTTTTTACACATGTAGGTCA 1172
|||| |||||||||||||||||| ||||||| ||||| | |||| || ||||||||||
Sbjct 1162 TTCAAACAGTTGTTATAAAGTGAAAGATGCA-CAGAGTCGTTTTGGCCAGATGTAGGTCA 1220
Query 1173 TCTTATTATTTATGGAGGCCCT-GGATGTAAATAA 1206
|||||| ||||||||||||| || |||| ||||
Sbjct 1221 TCTTATCGTTTATGGAGGCCCCAGG-TGTACATAA 1254
> AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:12096786-12098888 FORWARD LENGTH=819
Length=819
Score = 388 bits (210), Expect = 5e-107
Identities = 402/490 (82%), Gaps = 32/490 (7%)
Strand=Plus/Plus
Query 726 TGCGGGAGGACATGAGTGTTATAAT-CTCTTCTGTCCGGACGGATCCGGAATGATACTAG 784
||| ||||||| || |||||||||| | ||| |||||||| |||| ||||||||||||||
Sbjct 243 TGCAGGAGGACGTGCGTGTTATAATAC-CTTATGTCCGGATGGATTCGGAATGATACTAG 301
Query 785 TTA-GTGAAGATTTTACTCCTGGTCTACTTGCCGAACAAAAAAGTA-TT-GACTTTGCTA 841
|| || ||||| ||| |||||| | |||| |||| | | | || | || ||||||| |
Sbjct 302 -TAGGTCAAGATCTTATTCCTGGACGACTTACCGAGC-ACAGAG-ATTTAAACTTTGCCA 358
Query 842 TAATGAAGGATAAA-ATCAATGGAAATTGGTGGTTGTTGATGGGCAC---C---TCCTGG 894
|||| ||||| ||| | ||| ||||||||||||||||||||||| || | | |||
Sbjct 359 TAATCAAGGACAAAGA-CAACGGAAATTGGTGGTTGTTGATGGGTACTGGCATATTATGG 417
Query 895 GAAGAAATTGGGT-TTTGGCCATC-AAGCAGATTCAAAGAAAGTTCTGGTACAAGAG-TA 951
||| ||||| ||| | |||||| | ||| || ||||||||||||| |||||| |||| |
Sbjct 418 GAAAAAATT-GGTGTCTGGCCAGCAAAG-AGGTTCAAAGAAAGTTTTGGTAC-AGAGATC 474
Query 952 GAATGGGGTGGTGAAGTCTATAGCCCTTCG-CCTCCAAATCCTCCAATGGGCAATAGTCA 1010
|||||||||||||||||| ||||||||||| || |||| |||||| ||||| ||||| ||
Sbjct 475 GAATGGGGTGGTGAAGTCCATAGCCCTTCGTCC-CCAAGTCCTCCGATGGGTAATAGCCA 533
Query 1011 TTATCCGAAGGGGAGCCCCATAGTAGACTCATATGTCCGTTTGATCACGACTGTGG-ACG 1069
|||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||| |||
Sbjct 534 TTATCCGAAGGGGACCCCCAGACTAGACTCATATGTCCGTTTGATCACGACT-TGGGACG 592
Query 1070 AAAATTATAATACTGACAAAACTGTGAAAAACACTGAGAGGTATTCAGACAGTTGTTATA 1129
||||||||||| | ||||| |||||||||||| ||||| ||||||||| |||||||||
Sbjct 593 AAAATTATAATGCCGACAATTTTGTGAAAAACACAGAGAGATATTCAGACGGTTGTTATA 652
Query 1130 AAGTGAGAGATGCAACAGAGA--CATT-TT-TT--ACACATGTAGGTCATCTTATTATTT 1183
||||| ||||| ||| | | | || || || | | ||||||| ||||||||| |||
Sbjct 653 AAGTGGGAGATACAATATATATGCAAGATTCTTGGAGAAATGTAGGACATCTTATTGTTT 712
Query 1184 ATGGAGGCCC 1193
||||||||||
Sbjct 713 ATGGAGGCCC 722
Score = 239 bits (129), Expect = 5e-62
Identities = 196/228 (86%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 446 GCGATAATTCTAATCCGCAAAGTTCGTGGGGCAAAACCTACAAACCTACATCTTCT-ATT 504
||||||||| ||||||||||||||||||| ||||||| || ||| |||| |||||| ||
Sbjct 17 GCGATAATTATAATCCGCAAAGTTCGTGGAGCAAAACATATAAATCTACGTCTTCTAATG 76
Query 505 GATAATCATCATTTTGCTGTGGTGCGTACTAC-TAAAGGGAAACCAAAGAGTTATAATGG 563
|| |||||||||||||||| |||| ||| | ||||| ||| ||| | |||| |||||
Sbjct 77 GA-CGTCATCATTTTGCTGTGTTGCGGACT-CTTAAAGAAAAAACAAGGCGTTACAATGG 134
Query 564 TGCGTCTATGAATATTAATACATTCATTCCTTCGGTTGGACCTATGCAATTCAG-TGCTA 622
|||| |||||||| |||| |||||| ||||| ||||||||||| ||| ||||| | |||
Sbjct 135 AGCGTATATGAATACTAATGCATTCAATCCTTTGGTTGGACCTACGCAGTTCAGCT-CTA 193
Query 623 GTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTGGA 670
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTGGA 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5