BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492557
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23070.1 | Symbols: ATRBL7, RBL7 | RHOMBOID-like protein 7 |... 1327 0.0
AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23... 222 4e-57
> AT4G23070.1 | Symbols: ATRBL7, RBL7 | RHOMBOID-like protein 7
| chr4:12090690-12092077 REVERSE LENGTH=942
Length=942
Score = 1327 bits (718), Expect = 0.0
Identities = 882/959 (92%), Gaps = 19/959 (2%)
Strand=Plus/Plus
Query 1 ATGCTTTCCACGGCGGCTGAGGAAGATCCTGAAGGAGGAAGAAGAAGAGACCCTAATAAC 60
||||||||||| || || ||||||||||||||||||||||| || ||| | |||||||
Sbjct 1 ATGCTTTCCACAGCAGCAGAGGAAGATCCTGAAGGAGGAAGCAG-AGA-A-ACTAATAAT 57
Query 61 GGCGGCGAGACGACGACGGCGACGACACCGGACCTGCGATGGAGATCGTGGATAATCCCA 120
|||||||||||||| || || | | | | ||| ||||||||||||||| ||||||
Sbjct 58 GGCGGCGAGACGAC-AC--CG--G--A-C--A--TGCAATGGAGATCGTGGATTATCCCA 105
Query 121 ATAGTAGTGATTGCAAACGTAGTCGTTTTCATTGTTGTAATGTACT-TCAATGATTGTCC 179
|||||||||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||
Sbjct 106 ATAGTAGTGATTGCTAACGTCGTCGTTTTCGTTGTTGTAATGTACTAT-AATGATTGTCC 164
Query 180 TCACAAAAGCCATC-ATTGTCTCGCAAAGTTCCTCGGACGTTTCTCATTTGAGTCTTTCA 238
|||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 165 TCACAAAAGCCATCGA-TGTCTTGCAAAGTTCCTCGGACGATTCTCTTTTGAGTCTTTCA 223
Query 239 AGTCCAATCCTCTTCTAGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCTTTGGATT 298
|||| ||||||||||| ||||||||||| || || |||||||||||||||||||||| |
Sbjct 224 AGTCTAATCCTCTTCTTGGTCCTTCTTCCTCTACGTTGGAGAAAATGGGAGCTTTGGCGT 283
Query 299 GGAGGAAAATAGTTCACAAGCGTCAAGTGTGGAGACTCTTTACATGTATGTGGTTGCACG 358
|| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 284 GGGGGAAAATAGTTCACAAGCGTCAAGTTTGGAGACTATTAACATGTATGTGGTTGCACG 343
Query 359 CTGGTGTTATTCATTTGCTAGCAAACATGTGTTGTGTCGCCTTCATTGGAGTTCGTCTCG 418
|||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 344 CTGGCGTTATTCATTTGTTAGCAAACATGTGTTGTGTTGCCTACATTGGAGTTCGTCTCG 403
Query 419 AGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTATCTTGTATCGGGTTTCTGCGGGA 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 404 AGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTACCTTGTATCGGGTTTCTGTGGGA 463
Query 479 GCATATTATCTTGTTTGTTTCTTCAGAATGCTATATCTGTTGGTGCCTCAAGTGCTTTGT 538
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 464 GCATATTATCTTGTTTGTTTCTTGAGGATGCTATATCTGTTGGTGCCTCTAGTGCTTTGT 523
Query 539 TTGGCCTTTTAGGAGCAATGTTATCTGAATTGTTAATCAATTGGACTACTTATGACAATA 598
|||| || |||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 524 TTGGACTCTTAGGAGCAATGTTATCTGAATTGTTAATCAACTGGACAACCTATGACAACA 583
Query 599 AGGGTGTGGCTTTAGTAATGCTTTTGGTGATTGTTGGTGTTAACTTAGGATTAGGAACAC 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGGGTGTGGCTATAGTAATGCTTTTGGTGATTGTTGGTGTTAACTTAGGATTAGGAACAC 643
Query 659 TTCCTCCTGTCGATAATTTTGCTCACATTGGAGGTTTCTTAGGCGGTTTTCTTCTCGGTT 718
|||||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 644 TTCCTCCTGTTGATAATTTTGCTCATATTGGAGGTTTCTTTGGTGGTTTTCTACTCGGTT 703
Query 719 TTCTTCTCTTGATACATCCGCAGTTCGAATGGGAGGAAAACCGAGTTTCTCTTATGCCTG 778
||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 704 TTCTTCTCTTGATTCATCCGCAGTTCGAATGGGAAGAAAACCAAGTTTCTCTTATGCCTG 763
Query 779 GTACCATTGTTAAACCGAAGTACAACACTTGCCAACTCGTGCTTTGCATAATTGCATCCA 838
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 764 GTACCATTGTTAAACCCAAGTACAACACTTGCCAACTCGTGCTTTGCATAGTTGCATCGA 823
Query 839 TCGTTTTTGTCGCCGGGTTTACTTCTGGGTTGGTGATATTATTCAGAGGAGATAACTTGA 898
|||| |||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 824 TCGTCTTTGTCGCAGGGTTTACTTCTGGATTGGTGATACTATTCAGAGGAGATAGCTTGA 883
Query 899 ACAGATATTGTAAGTGGTGTCATAAACTAAGCTACTCCTCTAAATCCCAATGGACATGA 957
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 884 ACAGATATTGTAAGTGGTGCCATAAACTAAGCTACTCCTCTAAATCCCAATGGACATGA 942
> AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23408876-23410815
REVERSE LENGTH=1222
Length=1222
Score = 222 bits (120), Expect = 4e-57
Identities = 387/509 (76%), Gaps = 45/509 (9%)
Strand=Plus/Plus
Query 244 AATCCTCTTC-TAGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCTTTGGATTGGAG 302
||||||| || | ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 337 AATCCTC-TCTTTGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCATTGGAATGGAG 395
Query 303 GAAAATAGTTCAC-AAGCGTCAAGTG-TGGAGACT-CTTTACATGTATGTGG-TTGCACG 358
|||| |||| || || | ||||| | |||||||| || | | ||||||||| || ||||
Sbjct 396 GAAAGTAGTACATGAA-CATCAAG-GATGGAGACTTCTCT-CTTGTATGTGGCTT-CACG 451
Query 359 CTGGTGTTATTCAT-TTGCT-AGCAAACATGT-GTTGTGTCGC-CTTCATTGG-AGTTCG 413
||||| | |||||| || || | ||||||||| | || | | ||||||||| | | ||
Sbjct 452 CTGGTATCATTCATCTT-CTTA-CAAACATGTTGA-GTTT-GATCTTCATTGGTA-TCCG 506
Query 414 TCTCGAGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTATCTTG-TATCGGGTTTCT 472
|| |||||||| ||||| || | |||||||| ||| || ||| |||||||| ||
Sbjct 507 CCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGTTGATATA-CTTAATATCGGGTCTCG 565
Query 473 GCGGGAGCATA-TTATCTT-GTTTGTTTCTTCA-GAATGCTATATCTGTTGGTGCCTCAA 529
| || |||||| || || | | || || ||||| ||| | ||| ||||||||||| ||
Sbjct 566 GTGGAAGCATACTT-TCGTCGCTT-TTCCTTCAAGAAAG-TATCTCTGTTGGTGCTTCGG 622
Query 530 GTGCTTTGTTTGGCCTT-TTAGGAGCAATGTTATCTGAA-TTGTTAATCAATTGGACTA- 586
||||| | ||||| ||| || |||||||||||||||||| || ||| |||||||||||
Sbjct 623 GTGCTCTCTTTGGACTTCTT-GGAGCAATGTTATCTGAACTTCTTAC-CAATTGGACTAT 680
Query 587 CTTATGACAATAAGG-GTG-TGGCTTT-AGTAATGCTTTTGGTGATTGTTGGTGTTAACT 643
|| ||| ||| |||| | | || || | | | | ||| || | || | | | ||||
Sbjct 681 CT-ATGCCAACAAGGCG-GCTG-CTCTGA-TCACACTTCTGTTCATCATCGCAATCAACT 736
Query 644 TAGGATTAGGAACACTTCCTCCTGTCGATAATTTTGCTCACATTGGAGG-TTTCTTAGGC 702
||| |||||| | ||||||| || || || ||||| ||||||||||| ||| ||| |
Sbjct 737 TAGCATTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTT-TTAACC 795
Query 703 GGTTTTCTTC-TCGGTTTTCTTCTC-TTG 729
|| || || | |||| ||| | ||| |||
Sbjct 796 GGATT-CTGCCTCGGGTTTGTCCTCCTTG 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5