BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492558
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23060.1 | Symbols: IQD22 | IQ-domain 22 | chr4:12087203-120... 2399 0.0
> AT4G23060.1 | Symbols: IQD22 | IQ-domain 22 | chr4:12087203-12090575
FORWARD LENGTH=1702
Length=1702
Score = 2399 bits (1299), Expect = 0.0
Identities = 1519/1626 (93%), Gaps = 11/1626 (1%)
Strand=Plus/Plus
Query 48 AATGGGAAAAGCTTCACGGTGGTTTAGGAGTCTCTTCGGAGTCAAAAAACCCGACTCGGG 107
|||||||||||| |||||||||||||||||||| |||||||| || ||||||||| ||||
Sbjct 80 AATGGGAAAAGCGTCACGGTGGTTTAGGAGTCTATTCGGAGTTAAGAAACCCGACCCGGG 139
Query 108 TTATCCGGATCCATCCGTCGAGACGCCTTCTCGGTCAACTTCCTCTAATC-CAAAACGCC 166
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 140 TTATCCGGATCTATCCGTCGAGACGCCTTCTCGGTCAACTTCCTCTAATCTC-AAACGCC 198
Query 167 GATGGAGTTTCGTCAAATCCAAACGCGAAAAGGAAACCGCAACAACGAATCAAGTTCCTC 226
||||||||||||||||||||||||| ||||| |||| || | | |||||||||||||
Sbjct 199 GATGGAGTTTCGTCAAATCCAAACGAGAAAAAGAAAGTACACCGATTAATCAAGTTCCTC 258
Query 227 CTACTCCGTCGCTACCTAATACTACGCCTCCTCCTCCGTCGCACCTCCAGTCGTCTCCGA 286
|||||| |||||||| ||| | |||||||| || ||||| |||| ||| ||||| ||||
Sbjct 259 ATACTCCATCGCTACCGAATTCGACGCCTCCACCGCCGTCTCACCACCAATCGTCGCCGA 318
Query 287 GACGACGGAGGAAACAGAAGCCGATGTGGGACGACGAGGGAGGTGAAGATTCGGACAAGC 346
|||||||||| ||||| |||||||||||||| || |||||| ||||||||||||||||||
Sbjct 319 GACGACGGAGAAAACAAAAGCCGATGTGGGAGGATGAGGGAAGTGAAGATTCGGACAAGC 378
Query 347 ATGCGATTGCGGTGGCTGCCGCGACTGCTGCGGTTGCTGAAGCTGCCGTCGCCGCCGCTA 406
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 ATGCTATTGCGGTGGCTGCCGCGACTGCTGCGGTTGCTGAAGCTGCAGTCGCCGCCGCTA 438
Query 407 ATGCTGCTGCTGCGGTCGTCAGGCTCACGAGCACGAGCGGGAGGTCGACGCGAAGTCCTG 466
||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||
Sbjct 439 ATGCTGCTGCTGCGGTCGTCAGGCTGACGAGCACAAGTGGGAGGTCGACTCGAAGTCCTG 498
Query 467 TTAAGGCGCGGTTTAGCGATGGATTCGGCGACGTGGCGGCGCATGTTAGCAAGTTTTATG 526
||||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||||||||
Sbjct 499 TTAAGGCACGGTTTAGCGACGGATTCGACGACGTGGTGGCGCATGGTAGCAAGTTTTATG 558
Query 527 GACACGGCCGTGA-A-----GAACTTGCGGTGATTAAGATACAATCTACATTTCGCGGAT 580
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 559 GACACGGCCGTGACAGTTGTGAACTTGCGGTGATTAAGATACAATCTATATTTCGCGGAT 618
Query 581 ACTTGGCAAAGAGAGCGCTAAGGGCACTCAAGGGTTTGGTTAGGCTTCAAGCGATAGTTA 640
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ACTTGGCAAAGAGAGCGTTAAGGGCACTCAAGGGTTTGGTTAGGCTTCAAGCGATAGTTA 678
Query 641 GAGGCCATATCGAAAGAAAGAGAATGTCGGTCCATCTGCGCAGGATGCACGCTTTGGTTC 700
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 679 GAGGCCATATCGAAAGAAAGAGAATGTCAGTCCATCTGCGCAGGATGCACGCTTTGGTTC 738
Query 701 GAGCTCAGGCTCGTGTCCGTGCCACTCGGGTTATTGTCACGCCTGAATCTTCTTCTTCTC 760
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GAGCTCAGGCTCGTGTGCGTGCCACTCGGGTTATTGTCACGCCTGAATCTTCTTCTTCTC 798
Query 761 AATCCAACAATACCAAGTCTTCTCAATTCCAAAACCCTGGTCCACCGACGCCGGAAAAAC 820
|||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 799 AATCCAACAATACCAAATCTTCTCACTTCCAAAACCCTGGTCCACCAACTCCGGAAAAAC 858
Query 821 TCGAGCATTCAATCTCTTCTCGCCGCTCCAAGCTTGGTCATTCTCATCTTTTTAAGAGGA 880
|||||||||| |||||||||||| ||||||| || | ||||||||||||||| |||||||
Sbjct 859 TCGAGCATTCGATCTCTTCTCGCAGCTCCAAACTCGCTCATTCTCATCTTTTCAAGAGGA 918
Query 881 ATGGTTCTAAGGCAAGCGACAACAACAGACTTTACACTGCTCACAGAGAAACATTTTCAG 940
||||||| ||||||||||||||||||||||| ||| |||||||||| || ||||| ||||
Sbjct 919 ATGGTTCGAAGGCAAGCGACAACAACAGACTGTACCCTGCTCACAGGGAGACATTCTCAG 978
Query 941 CCACGGACGAAGAAGAAAAGATTCTTCAAATCGACAGGAAACACATCAGTTCTTACACAA 1000
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CCACAGACGAAGAAGAAAAGATTCTTCAAATCGACAGGAAACACATCAGTTCTTACACAA 1038
Query 1001 GACGCAGCAGACCAGACATGTTCTACTCATCCCACCTCATCCTAGACAATGGTGGCCTGT 1060
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1039 GACGCAACAGACCAGACATGTTCTACTCATCCCACCTCATCCTAGACAATGCTGGCCTGT 1098
Query 1061 CTGAACCAGTTTTTGCCACGCCCTTTAGCCCGTCCTCGTCGCATGAAGAGATCACAAGCC 1120
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1099 CTGAACCAGTTTTCGCCACGCCTTTTAGCCCGTCCTCGTCGCATGAAGAGATTACAAGCC 1158
Query 1121 AGTTTTGCACTGCAGAGAACAGTCCTCAGTTATACTCTGGTACTTCTAGAAGCAAACGCA 1180
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1159 AGTTTTGCACTGCAGAGAACAGTCCTCAGTTATACTCAGCTACTTCTAGAAGCAAACGCA 1218
Query 1181 GTGCTTTCACTGCTAGTTCTATAGCACCAAGCGATTGCACAAAAAGCTGCTGTGATGGTG 1240
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1219 GTGCTTTCACCGCTAGTTCTATAGCACCGAGCGATTGCACAAAAAGCTGCTGTGATGGTG 1278
Query 1241 ACCATCCAAGCTATATGGCTTGTACAGAGTCCTCTAGGGCTAAGGCCCGGTCTGCAAGTG 1300
||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1279 ACCATCCAAGCTACATGGCTTGTACAGAGTCCTCTAGGGCTAAGGCTAGGTCCGCTAGTG 1338
Query 1301 CCCCAAAGTCTCGACCACAGTTATATTACGAGCGGGCTTCATCGAAACGGTTTGTATTTG 1360
|||| ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||
Sbjct 1339 CCCCGAAGTCTCGACCACAGTTATTTTACGAGCGGCCTTCATCAAAACGGTTTGGATTTG 1398
Query 1361 TCGATGTGCCATACTGTGGTGATACAAAGTCAGGTCCCCAAAAAGGCTCTGCTCTGCATA 1420
| ||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1399 TTGATTTGCCGTACTGTGGTGATACAAAGTCCGGTCCCCAGAAAGGCTCTGCTCTGCATA 1458
Query 1421 CTAGTTTTATGAACAAGGCTTATCCCGGTTCAGGTCGGTTGGACCGTCTTGGGATGCCTA 1480
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1459 CTAGTTTTATGAACAAGGCTTATCCCGGTTCAGGTCGGTTGGACCGTCTCGGGATGCCAA 1518
Query 1481 TTGGGTATAGGTACTGAGAAACGTTGTTGGACTAGTTAACCTGGTTTTGTTGTAGATCAG 1540
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1519 TTGGGTATAGGTACTGAGAA-CGTTGTTGGACCCTTTAACCTGGTTTTGTTGTAGATCAG 1577
Query 1541 TGGATTGAGCTTTGCTGCTAATTTTCTTGGTTTGTAGTTTGGAGCTAAGTGGATTTAATC 1600
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1578 TGGATTGAGCTTTGCTTCTAATTTTCTTTGTTTGTAGTTTGGAGCTAAGTGGATTTAATC 1637
Query 1601 TAAAATGCAAATAGAACTTGCATAATCAAAATGTTTGCATCTCTATAAAGC-TCTGCCAT 1659
||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||
Sbjct 1638 TAAAATGCAAATAGAACTTGCTTAATCAAAATGTTTGCATCTCTATAAAGCAT-TGTCAT 1696
Query 1660 TTGCCT 1665
||||||
Sbjct 1697 TTGCCT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5