BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492561
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23040.1 | Symbols: | Ubiquitin-like superfamily protein | ... 2577 0.0
> AT4G23040.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:12075551-12078742 REVERSE LENGTH=1819
Length=1819
Score = 2577 bits (1395), Expect = 0.0
Identities = 1691/1824 (93%), Gaps = 59/1824 (3%)
Strand=Plus/Plus
Query 20 TATAAATTCTTGCCTCCTCCTTCACTCCAGCTCCGAACACAAATCTCCGACG-AAAACct 78
||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 39 TATTAATTCTTGCCTCCTCCTTCACTCCAGCTCCAAACACAAATCTCCGACGAAAAACTT 98
Query 79 ctctcaagcttttctctttctctcttctctttAATGGCGACACCTACTCAGGAAGCAATT 138
|||||||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 99 CTCTCAAG-------CTTTCTCT-TT-TC--TAATGGCGACACCTACTCAGGAAGCTATT 147
Query 139 GACACCTTTATGACCATCACCGG-TGCTTCCAATGCCGTCGCCGTTCGTAAGCTTGAGGA 197
|||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 148 GACACCTTCATGACCATCACCGGCT-CTTCCAATGCCGTCGCCGTTCGTAAGCTCGAGGA 206
Query 198 GTATCGTGGGAATCTCAATAGAGCTGTGAATGCATACTTTACTCATGGAGATCAAAATTT 257
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTATCGTGGGAACCTCAATAGAGCTGTGAATGCATACTTTACTCATGGAGATCAAAATT- 265
Query 258 GCTACATGAAGCCCCAACTAATATCCCTCAGGATGATGCAATGGATATAGATGATGGTGT 317
| | |||| || || | |||| || | | || |||| | |||
Sbjct 266 -C-ATATGATGC---AA-T-----------GGAT-AT--A--G-AT---GATG--G-TGT 296
Query 318 GACTCCAGTCCTCTCAGAAGCTAGAACAACGGTCCCGTTCCCGCTTCGGGATCCAAACTT 377
||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 297 GACTCCAGTCCTCTCTGAAGCTAGAACAACGGACCCGTTCCCGCTTCGTGATCCAAACTT 356
Query 378 TGGGACAAGTCTATTTGATAATGATCCTCGT-ATGCCACGTCCCCCATTTGTTAGTCAAC 436
||||| |||||||||||||||||||||| || ||| | |||||||||||||||||||| |
Sbjct 357 TGGGAGAAGTCTATTTGATAATGATCCT-GTTATGTCGCGTCCCCCATTTGTTAGTCATC 415
Query 437 CAAGGGAGGTCAGGCAGATACCTATAGAGGTTAAGGACAGCATTGGGCCATCAGGTCAAT 496
||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 416 CAAGGGAGGCCAGGGAGATACCTATAGAGGTTAAAGACAGCAATGGGCCATCAGGTCAAT 475
Query 497 CTAATGATGCTCCTACTATTGAGGATGTGACCGAGACATCTCAAGCTCATGGTCCAGCTG 556
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 476 CTAATGATGCTCCTACTATTGAGGATGTGACCGAGACAGCTCAAGCTCACGGTCCAGCTG 535
Query 557 CCCAAGAGGCGGTCATTATAGATGAAGTAAGTGATGATGATAGTCAGTCTGCTCCAACCG 616
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 CCCAAGAGGCGGTCATTATAGATGAAGTAAGTGATGATGATAATCAGTCTGCTCCAACCG 595
Query 617 GACAAAGTAGGCATGCTGTACCTGTTGGTTCTGCACACAATAATTTGCAATATTACAATG 676
||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct 596 GACAAAGTAGGCATGCTGTACCTGTTGGTTCTGCAGAAAATAATATGCAACATTACAATG 655
Query 677 ATATAGAAGAACAAATGATTCGAGCTGCTATTGAGGCCTCAAAAATGGAGACTGGTGATG 736
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 ATATAGAAGAACAAATTATTCGAGCTGCTATTGAGGCCTCCAAAATGGAGACTGGTGATG 715
Query 737 ACGTAACAAAATCTGTCACAGTGCAGTCAGCAGAG-GAAGAAGTGTTGCGCAGTGAAGGT 795
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 716 ACGTAACAAAATCTGTCACAGTGCAGTCAGCTGAGCGA-GAAGTGTTGCGCAGTGAAGGT 774
Query 796 TGGAAGGCTTCATCCTCAGAAAGAGAAGCTTCTGAAGTGGTTCCTATTCCAGTACAGCAG 855
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 775 TGGAAGGCTTCATCCTCAGAAAGAGAAGCTTCTGAAATGGTTTCTATTCCAGTACAGCAG 834
Query 856 TGTACCCGAGCCTCAAATGGAAGATTCGCAGCACCTAGCTCACTGTCTGAGGATGATGA- 914
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGTTCCCGAGCCTCAAATGGAAGATTCGCAGCACCTAGCTCACTGTCTGAGGATGATGAT 894
Query 915 G--GATGA---CGATGACCCTGATTATGTTGAGGA--A-GAGGAACCCCTTGTTAGGCAC 966
| ||||| |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 895 GATGATGATGACGATGACCCTGATTATGTTGAGGAGGAAGAGGAACCCCTTGTTAGCCAC 954
Query 967 AGACCAAGACGTGCGGTTTCTGGATCTCGGAGCTCACTTAATGATGATCTTCCCCGTAGC 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 AGACCAAGACGTGCGGTTTCTGGATCTCGGAGCTCACTTAATGATGATCTTCCCCGGAGC 1014
Query 1027 CCTGAAGCAGAAGGTGCAACTATTCATTCACCGGATGCGGGCAATGGTTTTCCTTCTGAG 1086
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1015 CCTGAAGCAGAAGATGCAACTATTCATTCACCGGGTGCTGGCAATGGTTTTCCTTCTGAG 1074
Query 1087 TGGGGAGGCATTTCTTCTGAGGAACATGATGAAGCTATCATGCTAGAGGCTGCCATGTTT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGGGGAGGCATTTCTTCTGAGGAACATGATGAAGCTATCATGCTAGAGGCTGCCATGTTT 1134
Query 1147 GGTGGCATTTCTGAGAGTGAATATGGTGTTCCTTATGCACATTATCCGCAAAGGACACAT 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTGGCATTTCTGAGAGTGAATATGGTGTTCCTTATGCACATTATCCGCAAAGGACACAG 1194
Query 1207 CGTCCACCCTCACCGTCATTGACAGCTCAGAGGTTGATTCGAGAACAGCAGGACGATGAG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1195 CGTCCACCCTCACCGTCATTGACAGCTCAGAGGTTGATTCGAGAACAGCAGGATGATGAG 1254
Query 1267 TATCTTGCATCGCTGGAAGCTGACAGGGTAAAAGCTGAGGCTCGTCGATTGGAGGAGGAA 1326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1255 TATCTTGCATCGCTGGAAGCTGACAGGGTAAAAGCTGAGGCTCGTCGATTGGAGGAAGAA 1314
Query 1327 GCTGCTAGAGTGGAAGCTCTTGAAGAAGCAAAGAGAAAGGAGGAAGAAGCTCGCAGGAAG 1386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GCTGCTAGAGTGGAAGCTATTGAAGAAGCAAAGAGAAAGGAGGAAGAAGCTCGCAGGAAG 1374
Query 1387 GTCGAAGAGGAACAGGAACTGGAGAGGCAATTAGTTTCCAAGGAAGCATCTCTGCCTCAG 1446
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 GTCGAAGAGGAACAGGAGCTGGAGAGGCAATTAGTTTCAAAGGAAGCATCTCTGCCTCAA 1434
Query 1447 GAGCCACCAGCAGGTGAAGAGAACGCCATCACACTTCTAGTTAGACTGCCAGATGGCACC 1506
||||||||||| || |||||||||||||| ||||||| ||| || |||||||||||||||
Sbjct 1435 GAGCCACCAGCCGGGGAAGAGAACGCCATTACACTTCAAGTCAGGCTGCCAGATGGCACC 1494
Query 1507 CGCCATGGCCGCCGGTTCCTTAAATCCGACAAACTTCAATCACTTTTCGACTTTATAGAC 1566
|| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1495 CGTCATGGCCGCCGGTTCTTTAAATCCGACAAACTCCAATCACTTTTCGACTTTATAGAC 1554
Query 1567 ATCTGTAGAGTTGTGAAGCCCAACACTTACAGGCTGGTAAGGCCATATCCTCGGCATGCT 1626
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1555 ATCTGTAGAGTTGTGAAGCCCAACACTTATAGGCTGGTAAGGCCATATCCTCGGCGTGCT 1614
Query 1627 TTTGGAGATGGGGAATGCTCGTCGACTCTACACGATGTCGGCTTAACGAGCAAACAAGAA 1686
||||||||||| |||||||| ||||||||| ||||| |||| ||||||||||||||||||
Sbjct 1615 TTTGGAGATGGAGAATGCTCATCGACTCTAAACGATATCGGTTTAACGAGCAAACAAGAA 1674
Query 1687 GCATTGTTCTTGGAGCTGATCTAAAATTGGT-T-ATTCTATTGGGGCTACATAACTTATT 1744
||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |||||
Sbjct 1675 GCATTGTTCTTGGAGCTGATCTAGAATTGGTATTATTCTATTGGGGTTACATAATTTATT 1734
Query 1745 CTTTTAAATGTCTTCTTCTTTTTCTTCGTAGAAGTTGTTACTCTTTAAATATTTTTTGTT 1804
|||||| |||||||||||||||||||||||||| ||||||||| |||| |||| ||| |
Sbjct 1735 CTTTTATATGTCTTCTTCTTTTTCTTCGTAGAATTTGTTACTCCCTAAACATTTATTGGT 1794
Query 1805 TTATTTAATCCAAAGCTGGCTTTT 1828
|||||||||||| ||||||||||
Sbjct 1795 CTATTTAATCCAAGGCTGGCTTTT 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90461382090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5