BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492563
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 800 0.0
AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 167 3e-40
> AT4G23020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G11780.1).
| chr4:12066173-12068538 REVERSE LENGTH=1613
Length=1613
Score = 800 bits (433), Expect = 0.0
Identities = 532/580 (92%), Gaps = 5/580 (1%)
Strand=Plus/Plus
Query 1 ATGACGTCGATAAGTTCCTCCGATCATCGCCTTCCGGTGAGCAAGAAACGATTAAAGCCA 60
|||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 97 ATGACGTCCATCAGTTCCTCCGATCACCCCCTTCCGGTGAGCAAGAAACGATTAAAGCCA 156
Query 61 TTGATGTTACGAGATTTCCTTCTTGATGATCTCAGCTCTTGCTTATCCAATGGCTTCAAA 120
||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 157 TTGATATTACGAGATTTCCTTCTCGATGATCTCAGCTCTTGCTCATCCAACGGCTTCAAA 216
Query 121 TCTTTCCCTCGTCTCCTCAACACTGAGATCAAACGGTCAGGAATGTTCCACCACAATCGC 180
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 217 TCTTTCCCTCGTCTCCTCAACGCTGAGATCCAACGGTCAGGAATGTTCCACCACAATCGC 276
Query 181 CGTATTACTTGCGGATTAGCGTTTACTCACGCCGTTCATAAAGCTTCGACGGCGTTACTC 240
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 277 CGTATTACCTGCGGATTAGCGTTTAGTCACGCCGTTCATAAAGCTTCGACGGCGTTACTC 336
Query 241 ACCGCCGTTAAACTCTTGCCCTTTCCTTCCTCCGTTAAATATCCGTCTCGTAAGAGAGAT 300
||||||||||||||||||||||| |||||||||||||||| || ||||||| | ||||||
Sbjct 337 ACCGCCGTTAAACTCTTGCCCTTCCCTTCCTCCGTTAAATCTCAGTCTCGTGATAGAGAT 396
Query 301 AATAAGAAAGGGCTTTTCTCAAGAAGCTTCTGGAAGAAACTTCCCCGACGTGAACTTAAC 360
|| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 397 AACAAGAAAGGACTTTTCTCAAGAAGCTTCTGGAAGAAACTTTCCCGACGTGAACTTAAC 456
Query 361 GTCGACG--G-AGAGAACGAACGGAAAACGGAGGATCGTGAACAAGAGATCCAACGGTGT 417
||||||| | |||||| ||||||| |||||| ||||||||| | |||||||||||||||
Sbjct 457 GTCGACGTCGGAGAGAAGGAACGGAGAACGGATGATCGTGAAGAGGAGATCCAACGGTGT 516
Query 418 AGATCATTTGCGGAGTTTCTTCGAGAGAGTCAAGATCAACCGTCTGATCTGATGTCTTGC 477
|||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| | ||
Sbjct 517 AGATCATTCGCGGAGTTTCTTCAAGAGAGTCAAGATCAACTGTCTGATCAGATTTATTAT 576
Query 478 -TTTCACACGACGGATTCATTTTCCGGTGAAGCGACATTGTCAAACGACGTCGTCGGTGA 536
|||| | ||||||||| ||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 577 ATTTCTC-CGACGGATTTATTTTCCGGTGAAGCAACATTGTCAAAGGACGCCGTCGGTGA 635
Query 537 CTCATCGAGTTTTAGTAGTGAGAACTCGGAGGCGACTCAG 576
||| |||||||||||||| ||| ||||||| | |||||||
Sbjct 636 CTCGTCGAGTTTTAGTAGCGAGGACTCGGAAGTGACTCAG 675
Score = 719 bits (389), Expect = 0.0
Identities = 468/507 (92%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 767 ATGAAAAGAAA-ATCATGAGAAAAAGCAGAAGATTTGAGAGTTTGGTACGACTTGAGCCT 825
|||| |||||| | ||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 950 ATGAGAAGAAACA-GATGAGAAAAAGAAGAAGATTAGAGAGTTTGGTACGGCTTGAGCCA 1008
Query 826 GTGGATTTAGAGAAACGCATAGAGAAATATGCGGAAAGACAAGATTACAACTCTCACATT 885
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1009 GTGGATTTAGAGAAACGCATAGAGAAATATGAGGAAAGACAAGATTACAAATCTCACATT 1068
Query 886 ATAGAAACCGAAGGAGATCAATCTGAAATCCGAGCAAACCGTTTGTTTGCTCTGGTGAAG 945
||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1069 ATAGAAATTGAAGAAGATCAATCCGAAATCCGAGCAAACCGTTTGTTTGCTCTAGTGAAG 1128
Query 946 TCTAGAATAATCGAGGAACGAAACCAATTGTTGGCATCTCATGTAGTAGACAATGTGTTG 1005
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1129 TCTAGAATAATCGAGGAACAAAACCAATTACTGGCATCTCATGTAGTAGACAATGTGTTG 1188
Query 1006 CTAGAtttttttAAAGAAAACGGGAACAATGAGACAAGAGACGAGGATAAGTTGGTGAAG 1065
||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1189 CTAGATTTTTTCAAAGAAAACAATAATAATGAGACAAGAGACGAGGATAAGTTGGTGGAG 1248
Query 1066 AGAGTTGAAGAATGGGTGATGAGGAAACAAGACGAAGAATATAATATGTTTAGGAGTTGG 1125
| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||
Sbjct 1249 ATAGTTGAAGAATGGGTGATGAGGAGACAAGACGATGAATATAATATGTTCATGAGTTGG 1308
Query 1126 GAAGTGAGAGAGAAAAGAGAGATTTATACGAAGGAAATGAAATGGGGTTGTATCAATGGA 1185
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1309 AAAGTGAGCGAGAAAAGAGAGATTTATGTGAAGGAAATGAAATGGGGTTGTATCAATGGG 1368
Query 1186 GATGAGAAAGAGTATGTGGTTGAAGAGTTGGGGAATGGTTTCTTCACTTCCTTGATTGAC 1245
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1369 GATGAGAAAGAGTATGTGGTCGAAGAGTTGGGGAATGGTTTCCTCACTTCCTTGGTTGAC 1428
Query 1246 GAACTTATTCATGATTTATCCTTGTGA 1272
|||||||| |||||| |||||||||||
Sbjct 1429 GAACTTATCCATGATATATCCTTGTGA 1455
Score = 126 bits (68), Expect = 5e-28
Identities = 72/74 (97%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 689 TAGTAGTTATGAGGAGTGGGGATTGTGTAGGGTCACATGTCAGTGACGGATCGTCTCTCA 748
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 692 TAGTAGTTATGATGAGTGGGGATTGTGTAGGGTCACATGTTAGTGACGGATCGTCTCTCA 751
Query 749 ACGACAACACAGAG 762
||||||||||||||
Sbjct 752 ACGACAACACAGAG 765
> AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:22907319-22909559 FORWARD LENGTH=1846
Length=1846
Score = 167 bits (90), Expect = 3e-40
Identities = 107/115 (93%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 576 GAAGAAAGACAAAATCTTTAGAC--AGACACAATTGCTAGACCAACCTATTCAGGAACAA 633
|||||||||||||||| |||||| | ||||||| ||||||||| ||||||||||||||
Sbjct 1827 GAAGAAAGACAAAATCGTTAGACGGTGTCACAATTTCTAGACCAAACTATTCAGGAACAA 1768
Query 634 ATTTTGCTTTTTCTTGCTATTGCTACATTTCTTTCAGATTCCGGTTACAGTGCCT 688
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1767 ATTTTGCTTTTTCTTGCTATTGCTACATTTCTTTCAGATTTCGGTTACAGTGCCT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5