BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492568
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22980.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2588 0.0
> AT4G22980.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING:
9 growth stages; BEST Arabidopsis thaliana protein match
is: Pyridoxal phosphate (PLP)-dependent transferases superfamily
protein (TAIR:AT5G51920.1); Has 520 Blast hits to 468
proteins in 130 species: Archae - 5; Bacteria - 23; Metazoa
- 99; Fungi - 131; Plants - 231; Viruses - 0; Other Eukaryotes
- 31 (source: NCBI BLink). | chr4:12043966-12045701 REVERSE
LENGTH=1736
Length=1736
Score = 2588 bits (1401), Expect = 0.0
Identities = 1627/1735 (94%), Gaps = 19/1735 (1%)
Strand=Plus/Plus
Query 1 aaaaaacagaggaataggagagag-g-gagagaaaaagaagaaagaTGAATTCACACTTC 58
|||| ||||||||||||||||||| | ||||| | |||| |||||||||||||||||||
Sbjct 5 AAAACACAGAGGAATAGGAGAGAGAGAGAGAGGTAGAGAA-AAAGATGAATTCACACTTC 63
Query 59 ATACAAGAAGCTTCAGAAACTTGCTTCAATGGCTGGTGTTCATCACCATTCTCATCTCAT 118
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 64 ATACAAGAAGCTTCAGAAGCTTGCTTCAATGGCTGCTGTTCATCACCATTCTCATCCCAT 123
Query 119 TCCATGTCTGAGAAACAAGAAGAGCTTGAGTTCTCAGTAATCACAACAGGAACTTCATTC 178
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 124 TCCATGTCTGAGAAACCAGAAGAGCTCGAGTTCTCAGTAACCACAACAGGAACTTCTTTC 183
Query 179 CTAACCAGAGAA-ACCAAATTCACGAGTCAAGAATCTCTCCCTCGTCTCCGTACATCTTT 237
|| |||||| || ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 184 CTGACCAGA-AACACCAAATTCACCAGCCAAGAATCTCTCCCTCGTCTCCGTACATCTTT 242
Query 238 CTACGATCTCATCACAGCTTTTCCTGATTACTTGCAGACGAATCAAGCCGATCATCTCCG 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 243 CTACGATCTCATCACAGCTTTTCCAGATTACTTGCAGACGAATCAAGCCGATCATCTCCG 302
Query 298 ATCTACCGAGTACGAAAACCTCTCATCCTCTTCCCACGTGTTTGGTCAACAACAACCATT 357
||||| |||||| ||||||||||||| || || ||||| ||||||||||||||||| ||
Sbjct 303 TTCTACAGAGTACCAAAACCTCTCATCATCCTCTCACGTCTTTGGTCAACAACAACCCTT 362
Query 358 GTTCTCTTACTCTCAGTTTCGAGAAATCTCGGAATTAGAATCCGA--T---TC--TCTCT 410
||||||||||||||||||||||||||| || |||| ||||||||| | || |||||
Sbjct 363 GTTCTCTTACTCTCAGTTTCGAGAAATATCCGAATCAGAATCCGATTTGAATCATTCTCT 422
Query 411 -TT-ACCTTGTCTTACAAGCAAGTGAGCTCAGGTAAAGAACTGTTGTCATTCGAAGGAGA 468
|| |||||||||| ||||||||| ||||| |||||||||||||| |||||||||| |||
Sbjct 423 CTTAACCTTGTCTTGCAAGCAAGTAAGCTCTGGTAAAGAACTGTTATCATTCGAAGAAGA 482
Query 469 ATCTCGGTTTCAGTCAAGGATGAGGAAGAGAATCACGAGTTTTATGAATCTTGAAGAATC 528
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 483 ATCTCGGTTTCAGTCAAGGATAAGGAAAAGAATCACGAGTTTTATGAATCTCGAAGAATC 542
Query 529 AGAATATCACATGATTCTAACTCAAGACCGTTCCGCTGCTTTCAAGATTGTAGCAGAACT 588
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 543 TGAATATCACATGATTCTAACTCAAGACCGTTCCTCTGCTTTCAAGATTGTAGCAGAACT 602
Query 589 CTACTCTTTCAAAACAAATCCCAATCTTCTCACAGTTTATAACTACGAAGACGAAGCAGT 648
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 603 TTACTCTTTCAAAACAAATCCCAATCTTCTCACAGTGTACAACTACGAAGACGAAGCAGT 662
Query 649 TGAAGAAATGATCAGAATCTCAGAGAAAAAGGGTGTAAAACCCGAATCGGCTGAGTTTTC 708
|||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 663 TGAAGAAATGATCAGAATCTCAGAGAAAAAGGGTATAAAACCCCAATCAGCCGAGTTTTC 722
Query 709 ATGGCCGAGCACTGAGATTCTCTCGGAGAAACTGAAGAGGAGAATCAGGATAAGTAAGAG 768
||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 723 ATGGCCGAGCACTGAGATTCTATCGGAGAAACTGAAGAGGAGAATCACTAGAAGTAAGAG 782
Query 769 AAGAGGTAGTAAAAGAGGACTCTTTGTGTTTCCACTTCAATCTCTTGTCACAGGAGCTTC 828
|||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 783 AAGA-G--GTAAAAGAGGACTCTTTGTGTTTCCACTTCAATCTCTGGTCACAGGAGCTTC 839
Query 829 GTATTCTTACTCATGGATGAGTTTAGCTCACGAAAACGATTGGCACGTGTTGCTTGACAC 888
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||
Sbjct 840 GTATTCTTACTCATGGATGAGTTTAGCTCGCGAAAGCGAATGGCACGTGTTGCTTGATAC 899
Query 889 CTCTGCTTTAGGTTCTAAAGACATGGAGACTTTAGGGCTTTCTCTGTTCCAACCAGATTT 948
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 CTCTGCTTTAGGTTCTAAAGACATGGAAACTTTAGGGCTTTCTCTGTTCCAACCAGATTT 959
Query 949 CCTCATCTGTTCTTTTACAGAGGTTTTAGGTCAAGATGATCCTTCTGGTTTTGGTTGCTT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 CCTCATCTGTTCTTTTACAGAGGTTTTAGGTCAAGATGATCCTTCTGGTTTCGGTTGCTT 1019
Query 1009 GTTCGTTAAGAAATCTAGCTATTCTGCTTTGTCGGAAGAACCAACGAATCCGGCGAATCT 1068
|||||||||||||||||||| | | |||||||| || |||||||||||||||| ||||||
Sbjct 1020 GTTCGTTAAGAAATCTAGCTCTACAGCTTTGTCAGAGGAACCAACGAATCCGGAGAATCT 1079
Query 1069 CACGGTAGTAAAAGCAGAGCCATCTTGGAAATGGAAAACAGAGTATCAAGCAGGATATGA 1128
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1080 CACGGCAGTAAAAGCAGAGCCATCTTGGAAATGGAAAACAGAGTATCAAGCAGGATATAA 1139
Query 1129 CGAGATTACCCCTGTGGACCACGAGGACCACAAGGCTGCTTCTACTTCTGGCTCTGAGAT 1188
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1140 CGAGATTACCCCTGTGGACCACGAGGACCACAAGGCAGCTTCTACTTCTAGCTCTGAGAT 1199
Query 1189 AGTTGAAATCGAATCATCGAGTGAA-CAAGATAAAGCAATGATTGAGTTTCGAGGACTAG 1247
||||||||||||||||||| || || ||||||||||||||||||||||||| |||| |||
Sbjct 1200 AGTTGAAATCGAATCATCG-GTTAAACAAGATAAAGCAATGATTGAGTTTCAAGGATTAG 1258
Query 1248 ATCACGCAGATTCTCTAGGACTAATACTAATCAGTAGAAGGTCAAAGTCGTTGACTTTAT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATCACGCAGATTCTCTAGGACTAATACTAATCAGTAGAAGGTCAAAGTCGTTGACTTTAT 1318
Query 1308 GGTTACTACGAGCCTTGAGGACTCTCCAACATCCAGGTTATCATCAAACAGAGATGCCTC 1367
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1319 GGTTACTACGAGCCTTGAGGACTCTGCAACATCCAGGCTATCATCAAACAGAGATGCCTC 1378
Query 1368 TGGTCAAAATCTACGGACCAAAGACGAAACCGAGCCGAGGACCGTCGATTTCGTTCAATA 1427
|||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 1379 TGGTCAAACTCTACGGACCAAAGACAAAACCAAGCCGAGGACCGTCGATTTCTTTCAACA 1438
Query 1428 TTTTCGATTGGCAAGGCGAAAAAGTCGATCCATTGATGGTGGAGAGGCTCGCGGAGAGGG 1487
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1439 TTTTCGATTGGCAAGGCGAAAAAGTCGATCCTTTGATGGTGGAGAGGCTTGCAGAGAGGG 1498
Query 1488 AAAAGATTGGTTTGCGATGTGCGTATTTGCATAAGATTAGGATTGGAAACAAGAGAAGAA 1547
||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1499 AAAAGATTGGTTTACGATGCGCTTATTTGCATAAGTTTAGGATTGGAAACAAGAGAAGAA 1558
Query 1548 GTGAGGAAGCTATGAGTTTGAGATTGTCAGTGGTGAGTGTTAGGTTAGGAGGCTTTATGA 1607
|||| |||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1559 GTGATGAAGCTGTGAGCTTGAGATTGTCAGTGGTGACTGTTAGGTTAGGAGGGTTTATGA 1618
Query 1608 CGAATTTTGAAGATGTTTTTAAGGTTTGGGAGTTTGTGTCGAGGTTTTTGGATGCTGATT 1667
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CGAATTTTGAGGATGTTTTTAAGGTTTGGGAGTTTGTGTCGAGGTTTTTGGATGCTGATT 1678
Query 1668 TTGTTGAGAAAGAGAAGTGGAGAAAGAAAGCTCTTGAGAAAAACAAATGATTGGT 1722
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1679 TTGTTGAGAAAGAGAAGTGGAGAATGAAAGCTCTTGACAAAAACAAATGATTGGT 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5