BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492570
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22950.1 | Symbols: AGL19, GL19 | AGAMOUS-like 19 | chr4:120... 1122 0.0
> AT4G22950.1 | Symbols: AGL19, GL19 | AGAMOUS-like 19 | chr4:12023915-12027421
REVERSE LENGTH=691
Length=691
Score = 1122 bits (607), Expect = 0.0
Identities = 663/690 (96%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGGGGCAAAACGGAGATGAAGAGGATAGAGAACGCAACAAGCAGGCAAGTGACA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGGGGCAAAACGGAGATGAAGAGGATAGAGAACGCAACAAGCAGGCAAGTGACG 60
Query 61 TTTTCGAAGAGAAGAAATGGACTCTTGAAGAAAGCTTTCGAATTATCGGTCCTTTGTGAT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTTCGAAGAGAAGAAATGGACTCTTGAAGAAAGCCTTCGAATTATCGGTCCTTTGTGAT 120
Query 121 GCTGAAGTTGCTTTGGTCATCTTCTCTCCAAGATCCAAACTCTATGAGTTCTCTAGCTCT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGAAGTTGCTTTGGTTATCTTCTCTCCAAGATCCAAACTCTATGAGTTCTCTAGCTCT 180
Query 181 AGTATAGCAAAAACAATTGAACGCTATCAGAGACGAATAAAAGAAATTGGGATTAACCAT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 181 AGTATAGCAGCAACAATTGAACGCTATCAGAGACGAATAAAAGAAATTGGGAATAATCAT 240
Query 241 AAGAGAAATGATAATTCTCAGCAAGCGAGAGACGAAACATCTGGTTTGACAAAAAAGATT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AAGAGAAATGATAATTCTCAGCAAGCGAGAGACGAAACATCTGGATTGACAAAAAAGATT 300
Query 301 GAACAGCTAGAGACATCTAAACGAAAATTGCTTGGAGAAGGCATTGATGCATGTTCTATC 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GAACAGCTAGAGATATCTAAACGAAAATTGCTTGGAGAAGGCATTGATGCATGTTCCATC 360
Query 361 GAGGAGCTGCAACAGTTAGAGAATCAGTTGGAGCGAAGCTTGAGCAGGATAAGAGCCAAG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GAGGAGCTGCAACAGTTAGAGAATCAGTTGGACCGAAGCTTGAGCAGGATAAGAGCCAAG 420
Query 421 AAGTACCAATTACTCCGTGAAGAAATTGAGAAGTTAAAGGAAGAGGAGAGGAATCTCGTT 480
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 421 AAGTACCAATTACTCCGTGAAGAAATTGAGAAGTTGAAGGCAGAGGAGAGGAATCTCGTT 480
Query 481 AAGGAAAATAAAGAACTGAAGGAGAAGTGGCTTGGAATGGGAGCA-CTAACAATAGCATC 539
|||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 481 AAGGAAAATAAAGATCTGAAGGAGAAGTGGCTTGGAATGGGAACAGC-AACAATAGCATC 539
Query 540 ATCACAATCTACGTTATCATCATCAGAAGTGAACTTAGATGACAATATGGAAGTGGAGAC 599
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATCACAATCAACGTTATCATCATCAGAAGTGAACATAGATGACAATATGGAAGTGGAGAC 599
Query 600 TGGTTTGTTCATTGGACCTCCTGAGACAAGACAGTTGATGAAAATTTC-TCCTCAAAATT 658
||||||||||||||||||||||||||||||||| | | |||||| | |||||||||||
Sbjct 600 TGGTTTGTTCATTGGACCTCCTGAGACAAGACAATCCAA-AAAATTCCCTCCTCAAAATT 658
Query 659 AATCTCACAACTTCTTCAAAAAGAATGTTT 688
||||| ||||||||||||||||||||||||
Sbjct 659 AATCTTACAACTTCTTCAAAAAGAATGTTT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5