BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492572
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22930.1 | Symbols: PYR4, DHOASE | pyrimidin 4 | chr4:120188... 2383 0.0
> AT4G22930.1 | Symbols: PYR4, DHOASE | pyrimidin 4 | chr4:12018884-12021591
FORWARD LENGTH=1645
Length=1645
Score = 2383 bits (1290), Expect = 0.0
Identities = 1459/1541 (95%), Gaps = 10/1541 (1%)
Strand=Plus/Plus
Query 1 AGCTTTGAGATGATAAAGACTTTGGTTTCTCCTTGTACTAGTGGATTTGGATCTCAGAAG 60
|||||| ||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 112 AGCTTTCAGATGATAAAGACTTTGGTCTCTCC-T-TA-TAGTGGATTTGGATCTCAGAAG 168
Query 61 TTGAAGTTTGACAGATCTTGTAAGAAAGTGAAGACGAGAGCAGTAAGAATGGAGCTCACT 120
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 169 TTGAAGTTTGACAGATCTTCTGAGAAAGTGAAGACGAGAGCAGTAAGAATGGAGCTCACA 228
Query 121 ATCACTCAACCTGATGATTGGCATCTTCATCTCCGTGACGGTGATCTTCTTCATGCTGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ATCACTCAACCTGATGATTGGCATCTTCATCTCCGTGACGGTGATCTTCTTCATGCTGTT 288
Query 181 GTTCCCCACAGTGCGAGTATTTTTAAGAGAGCGATTGTGATGCCGAATCTCAAGCCGCCT 240
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 289 GTTCCCCACAGTGCGAGTAATTTTAAGAGAGCGATTGTGATGCCGAATCTGAAGCCTCCT 348
Query 241 GTTACAACCACTGCAGCTGCCGTTGCTTACCGGGAATCTATCATGAAAGCTTTGCCATAT 300
|| || |||||||||||||| || ||||||| ||| |||||||||||||||||||| |
Sbjct 349 GTCACCTCCACTGCAGCTGCCATTATTTACCGGAAATTTATCATGAAAGCTTTGCCATCT 408
Query 301 GGGAGCAGCTTTGATCCACTTATGACACTTTATTTGACTGACAAAACTCAACCTGATGAG 360
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 409 GAGAGTAGCTTTGATCCACTTATGACACTTTATTTGACTGACAAAACTCTACCTGAAGAG 468
Query 361 ATCAAGCTTGCAAGGGAAAGTGGTGTGGTTTATGCGGTGAAGCTGTACCCTGCCGGAGCA 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ATCAGGCTTGCAAGGGAAAGTGGTGTGGTTTATGCGGTGAAGCTGTACCCTGCCGGAGCA 528
Query 421 ACAACCAACTCTCAAGATGGTGTCACGGACCTTTTTGGAAAATGCTTACCGGTACTAGAG 480
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 529 ACAACCAACTCTCAAGATGGTGTCACGGATCTCTTTGGAAAATGCTTACCGGTACTAGAA 588
Query 481 GAGATGGTCAAACAAAACATGCCTTTGCTGGTTCATGGGGAGGTCACAGATCCGAGTATT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GAGATGGTCAAACAAAACATGCCTTTGCTGGTTCATGGGGAGGTCACAGATCCGAGTATC 648
Query 541 GATGTCTTTGACCGTGAGAAAATCTTCATTGAGACAGTTCTGCAGCCTCTAATCCAACGC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GATGTCTTTGACCGCGAGAAAATCTTCATTGAGACAGTTCTGCAGCCTCTAATCCAACGC 708
Query 601 CTTCCACAACTGAAAGTAGTGATGGAACACATCACTACCATGGATGCTGTGAATTTTGTT 660
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 709 CTTCCGCAGCTGAAAGTAGTGATGGAACACATCACAACCATGGATGCTGTGAATTTTGTT 768
Query 661 GAATCTTGCAAAGAAGGGTCTGTGGGTGCAACAGTCACACCACAACATCTCCTTCTCAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GAATCTTGCAAAGAAGGGTCTGTGGGTGCAACAGTCACACCACAACATCTCCTTCTCAAC 828
Query 721 AGAAATGCCCTCTTCCAAGGTGGATTACAACCTCACAACTACTGTCTTCCCGTTCTCAAA 780
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AGGAACGCCCTTTTCCAAGGTGGATTACAACCTCACAACTACTGTCTTCCCGTTCTCAAA 888
Query 781 AGAGAAATACATCGAGAAGCCATTGTTAAAGCTGTAACTAGTGGAAGCAAGAAGTTCTTC 840
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 889 AGAGAAATACATAGAGAAGCCATTGTCAAAGCTGTAACTAGTGGAAGCAAGAAGTTCTTC 948
Query 841 CTCGGCACAGATAGTGCTCCACATGAACGGACTAGAAAAGAATCATCCTGCGGATGTGCT 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 949 CTCGGCACAGATAGTGCTCCACATGAACGGAGTAGAAAAGAATCATCCTGCGGATGTGCT 1008
Query 901 GGTATTTACAGTGCTCCCGTTGCCTTGTCCTTATACGCCAAGGTCTTTGATGAGGCGGGT 960
||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1009 GGTATTTACAGCGCTCCCATTGCCTTGTCCCTATACGCCAAGGTCTTTGATGAGGCGGGT 1068
Query 961 GCGCTTGACAAGTTGGAAGCTTTCACAAGCTTCAATGGACCTGATTTCTATGGCCTACCG 1020
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1069 GCGCTGGACAAGTTGGAAGCTTTCACCAGTTTCAATGGACCTGATTTCTATGGCCTTCCG 1128
Query 1021 AGAAACTCCTCAAAGGTCACACTGAAGAAATCTCCTTGGAAAGTTCCAGACGTTTTCAAC 1080
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1129 AGAAACTCGTCAAAGATCACACTGAAGAAATCTCCTTGGAAGGTTCCAGACGTTTTCAAC 1188
Query 1081 TTCTCC-TTCGGAGAGATCGTCCCTATGTTTGCTGGAGAAACCCTTCAATGGCAACCGTT 1139
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTC-CCATTCGGAGAGATCGTCCCTATGTTTGCTGGAGAAACCCTTCAATGGCAACCGTT 1247
Query 1140 GAAATAATGTGGTGGTTTGAAGTTGTCAAATTTT--CTCCCAAATCAGTGAACTCTTGTA 1197
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 1248 GAAATAATGTGGTGATTTGAAGTTGTCAAATTTTTTCTCCCAAATAAGTGAACTCGTGTA 1307
Query 1198 CCTTTTGGATTGGATTTTCTTACGGCTGAGTTATGCCCTGGATTTTTTGAGAAATAAAAG 1257
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1308 CCTTTTGGATTGAATTTTCTTACGGCTGAGTTATGCCCTGCATTTTTTGAGGAATAAAAG 1367
Query 1258 CAAGATACTGACCAATAATGTCTATTTTGTGTTTGAATCTGTCTATTTTTTCTATATTGA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1368 CAAGATACTGACCAATAATGTTTATTTTGTGTTTGAATCTGTCTATTTTCTCTATATTGA 1427
Query 1318 ATCTAAATGACAGTATAATTCTCATTCGGAGTGGGTCTGATTCCTAGTCCTCCACCCGAC 1377
|||||||||||||||||||||||| || | ||||||||||||||||||||||| | |||
Sbjct 1428 ATCTAAATGACAGTATAATTCTCAATCAGTGTGGGTCTGATTCCTAGTCCTCC-C--GAC 1484
Query 1378 GAAGATGATCCATTCTCGTAAAGGCTAGGCAGAATTGATGTTGGGTTAACTCTAGATGGA 1437
||||||| |||||||||||||||||||||||||| || |||||||| || | ||||||||
Sbjct 1485 GAAGATGTTCCATTCTCGTAAAGGCTAGGCAGAAATGCTGTTGGGTGAAGTGTAGATGGA 1544
Query 1438 CTCAGTGGCCAAGGTATGGGTTCCTCCATTTTCATTGATCCGCCTAGATTCTGTTCTTTT 1497
|||| ||||||||||||| |||||||||| |||| |||||||||||||||| |||||| |
Sbjct 1545 CTCATTGGCCAAGGTATGCGTTCCTCCATATTCACTGATCCGCCTAGATTCGGTTCTTCT 1604
Query 1498 CTAGATGGGTCTGTGTAAGAGACTTTCGCGTTAGTTTCATC 1538
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1605 GTAGATGGGTCCATGTAAGAGACTTTCGCGTTAGTTTCATC 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75903224040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5