BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492573
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12... 2054 0.0
> AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12016525-12018492
REVERSE LENGTH=1581
Length=1581
Score = 2054 bits (1112), Expect = 0.0
Identities = 1383/1503 (92%), Gaps = 62/1503 (4%)
Strand=Plus/Plus
Query 1 GCCGAATCTGTGTCAT-TTTGTCGCAACGAGATGGCT-AAGTTATCC-AAAAGACGGTTA 57
|||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1 GCCGAATCTGTGTC-TCTTTGTCGCAACGAGATGGCTAAAGTTATCCAAAAAGACGGTTA 59
Query 58 GAGCCGGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATTAAGAAG 117
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 60 GAGCCAGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATT-AG-AG 117
Query 118 AACACGTGGCACTCTCTCGTGTTCAGAAAATTTCCAAAAGAGCGTTCAGATTTGGGCACA 177
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 118 AACACGTGGCACTCTCTCGTGTTCAGAAAAATTCCAAAAGAGTGTTCAGATTTGGGCACG 177
Query 178 GAAGTGTGAAACGTGAAGCAACGAATCACTTTTAAACACAAGAACCAACCT-TATACGCA 236
|||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||
Sbjct 178 GAAGTGTGAAACGTGAAGCAAC-AATCCCTTTTAAACACAAGAACCAA-CTCAATACGCA 235
Query 237 TCACAAAAGAACCCTAAATTCCAGGAAGAT-T------G---A---AAAACCAAATCTTC 283
|||| ||||||||||||||||| ||||||| | | | ||||||||| ||||
Sbjct 236 TCAC-AAAGAACCCTAAATTCCTGGAAGATCTCAAAAGGAAAATTCAAAACCAAAGCTTC 294
Query 284 AAG----CA--AAGGaaa--aaaaaCTCAAAATTTGGGTC--TT-T-TATTT-CTT-AAA 329
||| || ||| ||| |||| |||||| |||||||| || | ||||| || |
Sbjct 295 AAGCAATCATCAAGCAAAGGAAAAGCTCAAATTTTGGGTCTTTTATATATTTATTTCTTA 354
Query 330 AAGTTACAAGC-TTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAAATCGCGTGAAAA 388
||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 355 AAGTTACAATCTTTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAACTCGCGTGAAAA 414
Query 389 AATTGTATCCAAGCTTCG-GAGAA-GA-TCTCTCTGTATTTAGTGGTGCTTTGTTTCTGT 445
|||||||||||||||||| || || || |||||||||||||||||| | |||| ||||||
Sbjct 415 AATTGTATCCAAGCTTCGTGA-AAGGAGTCTCTCTGTATTTAGTGGCGTTTTG-TTCTGT 472
Query 446 TCTAATTTCTGAAAAATTGAAGCTTTTGATTT-GGTTTCAAGAGAGCAGAGAGATGTGTA 504
| | |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 473 TGTTATTTCTGAAATATTGAAGCTTTTGATTTGGGTTTCAAGAGAGC--AGAGATGTGTA 530
Query 505 GTTTGTCGGCGAATCTGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 564
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTTTGTCGGCGATTATGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 590
Query 565 GTAACAGT---AGCAGCAGCTCACTCTTCTTCACCAACAGAAGATCCAAGAAGAAGAATC 621
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 591 GTAACAGTAGCAGCAGCAGCTCACTCTTCTTCAACAATAGAAGATCCAAGAAGAAGAACC 650
Query 622 AATCGATTGTTCCCGTTGCAAGATTGTTTGGACCCGCGATTTTCGAATCATCCAAATTGA 681
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 651 AATCGATTGTTCCCGTTGCAAGGTTGTTTGGACCGGCGATTTTCGAATCATCCAAATTGA 710
Query 682 AAGTATTGTTTTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGAACTTACA 741
||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 711 AAGTACTCTTCTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGGACTTACA 770
Query 742 CTCTCACTCACAGTGACATTACAGCTAAATTAACTTTAGCTATTTCTCACTCCATAAACA 801
| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 771 CACTCACTCACAGTGACATTACAGCTAAACTAACCTTAGCTATTTCTCAATCCATAAACA 830
Query 802 ATTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 861
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ACTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 890
Query 862 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 950
Query 922 TTTTAGATCTCTTTGCAAAGTTTCGATACTTCATCTTTTGCAAAGAACTACCAGTGGTGT 981
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 951 TTTTAGATCTCTTTGCAAAGTTTCGATATTTCATCTTTTGCAAAGAACTACCTGTGGTGT 1010
Query 982 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAATTACCCTGAGTTACAAGAAG 1041
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 1011 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAACTATCCTGAGCTACAAGAAG 1070
Query 1042 CTCTTGTTTGGGTTTACTTCCATTCTAATGTCAACGAGTTCAACAAAGTCGAATGTTGGG 1101
||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1071 CTCTTGTTTGGGTCTATTTCCATTCTAATGTCAATGAGTTCAACAAAGTCGAGTGTTGGG 1130
Query 1102 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGGGACTCTTCCCGATGCTC 1161
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1131 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGAGACTCTTCCCGAGGCTC 1190
Query 1162 GGTGCGCGGAAGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1221
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGTGTGCGGACGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1250
Query 1222 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAAGGAATTGCTACTC 1281
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1251 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAGGGAATTGCTACTC 1310
Query 1282 CTAATCCGGAGAAACTCTAGTGATTAAACATCAAACTACAAGTTTTTCTTTTGGTTTCTG 1341
| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1311 CAAATCCGGAGAAACTCTAGTGACTAAATATCAAATTACAAGTTTTTCTTTTGGT----- 1365
Query 1342 GTAGTTTGTATAAAAGTGAAAAGGAAATGGCAGGTCTTTCCTTTTGGTGGATCTAAATAT 1401
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1366 --AGTTTGTACAAA-GTGAAAAGGAAATGGCAGGACTTTCCTTTTGGTGGATCTAAATAT 1422
Query 1402 TGGTTTGGT--G-T--ACATAATGTGGTATAGGAAAATAATGATTATCTGTAGGTTAAAT 1456
||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1423 TGGTTTGGTTTGGTGTACATAATGTGGTATAGGAAAATAATGATTATTTGTAGGTTAAAT 1482
Query 1457 ACA 1459
|||
Sbjct 1483 ACA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5